BAC Information

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BAC

Clone NameB6Ng01-032M09
Chromosome6 (Build37)6 (Build37)
Map Location 65,091,790 - 65,092,56218,835,746 - 18,835,968
singlet/doubletsingletsinglet
Overlap genePtgds2
Upstream geneGrid2, Atoh1, LOC100041833, LOC667115, Smarcad1
Downstream geneLOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-032M09.bB6Ng01-032M09.g
ACCDH862010DH862011
length776217
definitionDH862010|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M09, 5' end.DH862011|Mus musculus domesticus DNA, BAC clone: B6Ng01-032M09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,091,790 - 65,092,562)(18,835,746 - 18,835,968)
sequence
gaattcttaaggaaacaaaacaaaacagaacagttacaaaacaaaactcc
ttagctaaccaggtattgggaaaaagtttccagacctcacacagagtctc
aactaaaagattcgtccaaatttcacatgaatacgaatctatagattcag
tttctttctttttcttttcctgctttatgttttattctagaatttctttt
ccaatttttattgatgatttgggagttttatacaatgcacctcatcacac
acacttcgctgccattctaggcccaccccacccttgtgagcacctatttc
cccctcccccaaagggatgaagaacaaaaaacaacaataaaaaaataatc
aaactctgtttctttaatgtggcacaatcatatatattacacctctaatt
ccaagcagaccagtcagtttagtaaaagaggatggcagcagataatgtga
ggagtatcaagggagagatgactattatctacgttcaaaagccaagacag
atctgtcggtaaacctgactgtaaatttcaaatgacaggtcaggaccaaa
ccagctggaagtagatgagctgggggagaagttcaccaagcaggcagtgg
ggcttgtgggaaatgccttgtgaataagctaatgtggtgtttgtttaagt
ctagagatacaaagcctcaaaaacaaaactgatcatatgaaacattttgc
agggacataaaggggcaagattaaaagaatgcatataattagactcaatt
ttgcctcacacaagagatgtggccaa
cttgtttagttctgagccccattttttaatggggttatttgattttctga
agtccaccttcttgagttctttatatatgttggatattagtcccctatct
gatttaggataggtaaagatcctttcccaatctgttggtggtctctttgt
cttattgacggtatcttttgccttgcagaaactttggagtttctttaggt
cccatttgtcaattctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_65091790_65092562
seq2: B6Ng01-032M09.b_36_811

seq1  GAATTCTTAAGGAAACAAAACAAAACAGAACAG-AACAAAACAAAACTCC  49
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  GAATTCTTAAGGAAACAAAACAAAACAGAACAGTTACAAAACAAAACTCC  50

seq1  TTAGCTAACCAGGTATTGGGAAAAAGTTTCCAGACCTCACACAGAGTCTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTAACCAGGTATTGGGAAAAAGTTTCCAGACCTCACACAGAGTCTC  100

seq1  AACTAAAAGATTCGTCCAAATTTCACATGAATACGAATCTATAGATTCAG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAGATTCGTCCAAATTTCACATGAATACGAATCTATAGATTCAG  150

seq1  TTTCTTTCTTTTTCTTTTCCTGCTTTATGTTTTATTCTAGAATTTCTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTTTCTTTTCCTGCTTTATGTTTTATTCTAGAATTTCTTTT  200

seq1  CCAATTTTTATTGATGATTTGGGAGTTTTATACAATGCACCTCATCACAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTTTATTGATGATTTGGGAGTTTTATACAATGCACCTCATCACAC  250

seq1  ACACTTCGCTGCCATTCTAGGCCCACCCCACCCTTGTGAGCACCTATTTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCGCTGCCATTCTAGGCCCACCCCACCCTTGTGAGCACCTATTTC  300

seq1  CCCCTCCCCCAAAGGGATGAAGAACAAAAAACAACAATAAAAAAATAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCAAAGGGATGAAGAACAAAAAACAACAATAAAAAAATAATC  350

seq1  AAACTCTGTTTCTTTAATGTGGCACAATCATATATATTACACCTCTAATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTGTTTCTTTAATGTGGCACAATCATATATATTACACCTCTAATT  400

seq1  CCAAGCAGACCAGTCAGTTTAGTAAAAGAGGATGGCAGCAGATAATGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGACCAGTCAGTTTAGTAAAAGAGGATGGCAGCAGATAATGTGA  450

seq1  GGAGTATCAAGGGAGAGATGACTATTATCTACGTTCAAAAGCCAAGACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATCAAGGGAGAGATGACTATTATCTACGTTCAAAAGCCAAGACAG  500

seq1  ATCTGTCGGTAAACCTGACTGTAAATTTCAAATGACAGGTCAGGACCAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCGGTAAACCTGACTGTAAATTTCAAATGACAGGTCAGGACCAAA  550

seq1  CCAGCTGGAAGTAGATGAGCTGGGGGAGAAGTTCACCAAGCAGGCAGTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGGAAGTAGATGAGCTGGGGGAGAAGTTCACCAAGCAGGCAGTGG  600

seq1  GGCTTGTGGGAAATGCCTTGTGAATAAGCTAATGTGGTGTTTGTTTAAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGGAAATGCCTTGTGAATAAGCTAATGTGGTGTTTGTTTAAGT  650

seq1  CTAGAGATACAAAGCCTC-AAAACAAAACTGATCATATG-AACATTTTGC  697
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  CTAGAGATACAAAGCCTCAAAAACAAAACTGATCATATGAAACATTTTGC  700

seq1  AGGGACATAAAGGGGCAAGATTAAAAGAATGCATATAATTAGACTCAAAT  747
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGGACATAAAGGGGCAAGATTAAAAGAATGCATATAATTAGACTCAATT  750

seq1  TTGCCTCACACAAGAGATGTGGCCAA  773
      ||||||||||||||||||||||||||
seq2  TTGCCTCACACAAGAGATGTGGCCAA  776

seq1: chr6_18835746_18835968
seq2: B6Ng01-032M09.g_69_291 (reverse)

seq1  GAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAA  50
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGAATTGACAAATGGGACCTAAAGAAACTCCAAAGTTTCTGCAAGGCAA  50

seq1  AAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATC  100
      |||| ||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAGATACCGTCAATAAGACAAAGAGACCACCAACAGATTGGGAAAGGATC  100

seq1  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGA  150

seq1  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGG  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGG  200

seq1  GCTCAGAACTGAACAAAGAATTC  223
      |||||||||| ||||| ||||||
seq2  GCTCAGAACTAAACAAGGAATTC  223