BAC Information

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BAC

Clone NameB6Ng01-033B21
Chromosome6 (Build37)4 (Build37)
Map Location 126,666,542 - 126,666,99193,736,667 - 93,737,489
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem16b, Ntf3, LOC100043565, LOC667427, LOC100043567, Kcna5, Kcna1
Downstream geneKcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11, Efcab4b, Prmt8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033B21.bB6Ng01-033B21.g
ACCDH862260DH862261
length968822
definitionDH862260|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B21, 5' end.DH862261|Mus musculus domesticus DNA, BAC clone: B6Ng01-033B21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(126,666,542 - 126,666,991)(93,736,667 - 93,737,489)
sequence
gaattcactctgtagaccaggctagcctcgaacttagaaatcagcctgct
tctgcctcccaagtgctgggactaaaggtgtgctccactaccacctgact
tggtttttgtttttttttaaagaagattattttgttttatgggtacatga
tttttgcctacctgcaagtgtgtatttcacaagcacacctagtacctgca
gagccagaagagagtacggaatatcctggaattggaattaaagacacttg
tgggtcgccatcttggtccaggacccgccgaacttaggaaattagtctga
acaggtgagagggtgcgccagagagcctgacagcttctggaacaggcgga
agcacagaggcgctgaggcagcaccctgtgtgggccggggacagccggcc
accttccggaccagaggacaggtgcccgcccggctggggaggcgacctaa
gccacagcagcagcggtcgccatcttggtccgggacccgccgaacttagg
aaattagtctgaacaggtgagagggtgcgccagagaacctgacagcttct
ggaacaggcggaagcacagaggcgctgaggcagcaccctttgtgggccgg
ggacagccagccaccttccggaccggaggacaggtgcccgcccggctggg
gaggcggcctaagccacagcagcagcggtcgccatcttggtccgagaccc
gccgaacttaggaaattagtctgaacaggtgagagggtgcgccagagaac
ctgacagcttctggaacaggcagaagcacagaggcgctgaggcagcaccc
tgtgtgggccggggacagccagccaccgtccggaccggaggacaggtgcc
cacccagctggggaggcggcctaagccacagcagcagcggtcgccatctt
ggtcccgggactccaggaacttaggaatttagtctgctagtgagagtctg
taccacctggggactgcc
gaattctccttttagctataaaatcagcagcaagccatgaaaacagctga
gtttggagcagtaacttaatacacaggaatctttgaccatggtaaaattt
aagtggcaaaagaagtgtgaaaggagttaaaatattagctcaatattatt
ttttaaaatgaggaaaagaaaacagaagagataacagggatacatttact
gtaaacattgtgctatattattctcaatgatgctgtgaagtaattatttc
ctttattcatgtgcataaatggtacctggccttatgctaagtacttagta
ggaattctggtggcaaaaatgttaattaaagatatgatggattctaaaaa
taaaaaagaaaggaaataatatttatccaaagataaagtaagacaaaaag
ttgccttcactatcagtcagattatctgaattcaaaaagaaacaaatgaa
acaaagggagaatatttgcgacactgacatagatgaagggttggaaaata
ttgatggagtggggatcagtgtatgcctagggcaaataatcaagccagtt
agcaagagcactgaaggtatgaagaagcacaaggaactgagctcaaagct
ccagaacctatgtacagccatgtgtgttcagactcacctatcaggtcagt
aatgttggcagaagagacagaaggatcatagctccagcctaactatgagt
ttaatgagagaccttgtattaaatgaataaggtggagagtgataaagcag
acaattgacatcatcttctgactcttttccaaatacccacccacacaatt
tgttttttatacttaaatagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_126666542_126666991
seq2: B6Ng01-033B21.b_48_163

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTG  50
      ||||| ||||||||||||| |||||||||| ||||||| |||||| ||||
seq2  TCACTCTGTAGACCAGGCTAGCCTCGAACTTAGAAATCAGCCTGCTTCTG  50

seq1  CCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCA-CGCCCGGCT---T  96
      ||||||||||||||||| |||||| |||  |||| | | || | ||   |
seq2  CCTCCCAAGTGCTGGGACTAAAGGTGTGCTCCACTACCACCTGACTTGGT  100

seq1  TCATGAACAATTCTAAAACCAACCCTAAGTCAGATTGCTATTTTCACCAG  146
      |  ||     || |||                                  
seq2  TTTTGTTTTTTTTTAA----------------------------------  116

seq1  CATTGGTGGTAAAATGCATCCCCTGACCCATGGACCATGAAACCACCTCT  196
                                                        
seq2  --------------------------------------------------  116

seq1  CTGCAAAGCTGGCCATACACAACTACCACCTCCACAGGCAGCTAGCCTTT  246
                                                        
seq2  --------------------------------------------------  116

seq1  CTCATTGCTGTCTTACTTCAGCCGGAGGCTTCACTCCCAGAGAGAAGCTC  296
                                                        
seq2  --------------------------------------------------  116

seq1  GCCTGAACCAGAAGCTAAAAGTCCACAGCTGCTGTTTTAATGCCCTTAGC  346
                                                        
seq2  --------------------------------------------------  116

seq1  TTGGATGTGTGAGTTACTCAGCATAAGCTAACAGATGCACTGTCAGTGTG  396
                                                        
seq2  --------------------------------------------------  116

seq1  GGAGCTGCCTTTCCTGGAGAGTTATCATTGCATATGAGTTTGTTTTTTTT  446
                                                        
seq2  --------------------------------------------------  116

seq1  TTAA  450
          
seq2  ----  116

seq1: chr4_93736667_93737489
seq2: B6Ng01-033B21.g_65_886

seq1  GAATTCTCCTTTTAGCTATAAAATCAGCAGCAAGCCATGAAAACAGCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTTTAGCTATAAAATCAGCAGCAAGCCATGAAAACAGCTGA  50

seq1  GTTTGGAGCAGTAACTTAATACACAGGAATCTTTGACCATGGTAAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGCAGTAACTTAATACACAGGAATCTTTGACCATGGTAAAATTT  100

seq1  AAGTGGCAAAAGAAGTGTGAAAGGAGTTAAAATATTAGCTCAATATTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGCAAAAGAAGTGTGAAAGGAGTTAAAATATTAGCTCAATATTATT  150

seq1  TTTTAAAATGAGGAAAAGAAAACAGAAGAGATAACAGGGATACATTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATGAGGAAAAGAAAACAGAAGAGATAACAGGGATACATTTACT  200

seq1  GTAAACATTGTGCTATATTATTCTCAATGATGCTGTGAAGTAATTATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACATTGTGCTATATTATTCTCAATGATGCTGTGAAGTAATTATTTC  250

seq1  CTTTATTCATGTGCATAAATGGTACCTGGCCTTATGCTAAGTACTTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCATGTGCATAAATGGTACCTGGCCTTATGCTAAGTACTTAGTA  300

seq1  GGAATTCTGGTGGCAAAAATGTTAATTAAAGATATGATGGATTCTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGGTGGCAAAAATGTTAATTAAAGATATGATGGATTCTAAAAA  350

seq1  TAAAAAAGAAAGGAAATAATATTTATCCAAAGATAAAGTAAGACAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGAAAGGAAATAATATTTATCCAAAGATAAAGTAAGACAAAAAG  400

seq1  TTGCCTTCACTATCAGTCAGATTATCTGAATTCAAAAAGAAACAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTCACTATCAGTCAGATTATCTGAATTCAAAAAGAAACAAATGAA  450

seq1  ACAAAGGGAGAATATTTGCGACACTGACATAGATGAAGGGTTGGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGAGAATATTTGCGACACTGACATAGATGAAGGGTTGGAAAATA  500

seq1  TTGATGGAGTGGGGATCAGTGTATGCCTAGGGCAAATAATCAAGCCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGAGTGGGGATCAGTGTATGCCTAGGGCAAATAATCAAGCCAGTT  550

seq1  AGCAAGAGCACTGAAGGTATGAAGAAGCACAAGGAACTGAGCTCAAAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGCACTGAAGGTATGAAGAAGCACAAGGAACTGAGCTCAAAGCT  600

seq1  CCAGAACCTATGTACAGCCATGTGTGTTCAGACTCACCTATCAGGTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCTATGTACAGCCATGTGTGTTCAGACTCACCTATCAGGTCAGT  650

seq1  AATGTTGGCAGAAGAGACAGAAGGATCATAGCTCCAGCCTAACTATGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGCAGAAGAGACAGAAGGATCATAGCTCCAGCCTAACTATGAGT  700

seq1  TTAATGAGAGACCTTGTATTAAATGAATAAGGTGGAGAGTGATAAAGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGAGACCTTGTATTAAATGAATAAGGTGGAGAGTGATAAAGCAG  750

seq1  ACAATTGACATCATCTTCTGACTCATTATCCAAATACACACACACACAAT  800
      |||||||||||||||||||||||| || ||||||||| ||| ||||||||
seq2  ACAATTGACATCATCTTCTGACTC-TTTTCCAAATACCCACCCACACAAT  799

seq1  TAGTTTTTAAAACTTAAATAGTG  823
      | |||||| | ||||||||||||
seq2  TTGTTTTTTATACTTAAATAGTG  822