BAC Information

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BAC

Clone NameB6Ng01-033L04
Chromosome6 (Build37)15 (Build37)
Map Location 18,835,441 - 18,835,96820,306,196 - 20,307,097
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L04.bB6Ng01-033L04.g
ACCDH862674DH862675
length1,020892
definitionDH862674|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L04, 5' end.DH862675|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,441 - 18,835,968)(20,306,196 - 20,307,097)
sequence
gaattcttcagttctgagccccatttttaatggggttatttgattttctg
aagtccaccttcttgaattctttatatatgttggatattagtcccctatc
tgatttaggataggtaaagatcctttcccaatctgttggtggtctttttg
tcttattgacggtgtcttttgccttgcagaaactttggagtttcattagg
tcccatttgtcaattctcgatcttacagcacaagccattgctgttctgtt
caggaatttttcccctgtgcccatatcttcaaggcttttccccactttct
cctctataagtttcagtgtctctggttttatgtgaagttccttgatccac
ttagatttgaccttagtacaaggagataagtatggatcgattcacattct
tctacacgataacaaccagttgtgccagcaccaattgttgaaaatgctgt
ctttcttccactggatggttttagctcccttgtcgaagatcaagtgacca
taggtgtgtgggttcatttctgggtcttcaattctattccattgttctac
ttgtctgtctctataccagtaccatgcagtttttatcacaattgctctgt
agtaaagctttaggtctggcatggtgattccgccagaagttcttttatcc
ttgagaagactttttgctatcctaggttttttgttattccagacaaattt
gcaaattgctccttccaattcgttgaagaattgagttggaattttgatgg
ggattgcattgaatctgtagattgcttttggcaagatagccatttttaca
atgttgttcctgccaatccatgagcatgggagatctttccatcttctgag
atcttccttaatttctttcttcagagatttgaagtttttatcatacagat
ctttcacttccttagttagagtcacgccaagatattttatattatttgtg
actattgagaggtgttgtttccctatttctttctcagcctgttattcttt
gttagagaaaggccattgac
gaattctcagctccccttgcaccatgcctgactgtggttctcaccttgat
gatactggattgaacctctgaacctgtaagccagccccaactaaatgttg
ttttataagagttcccttggtcatggtttctgtttacagcagtaaatccc
taactaaaacaccttctaatctatttccaaggacatacagattccatatc
agaaggaaaactaaatctgggcttcttatattaactggtctgtgttatta
tgtttatagtagtctagtcaatgtaaagcacccactaatcaaaatgaatg
tagcaattttatttgcttaatgtcatatatataataaatataggccaata
aaatagcttgtatgtacctgggaatatcagaaattcatttagtcttagag
tttaagtagatagctatataaaaataaaaggaaaggggatgcaaaactta
atattttaatatataaagagttcatgtagaaatactgcttcaagccacat
ttcctaaatgacaatgatttgttttttccaatattgaaaataagaatgta
atcataatatagagattttattagatattttcttcatttacatttcaaat
gttatccccttttctctttatagctatctgctgagaggcgctgccagtac
ctgaccaatacagaagtggatgctcacagtcatccattagcctgagccaa
tgaaggaactagagaaaggatccaaggagctgaagatgttgcagcccata
ggaagaatatagagattttaacgtttatttttttttatttcaaatcgtga
ataacaataacaatacttaaaatccacttgagtattttctttgcctaaca
atacattacttacctcctgctagtagttatccaaattcaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835441_18835968
seq2: B6Ng01-033L04.b_48_571 (reverse)

seq1  CCCAGAGATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAG  50

seq1  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGG  100

seq1  CACAACTGGTTGTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATC  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACAACTGGTTGTTATCGTGTAGAAGAATGTGAATCGATCCATACTTATC  150

seq1  TCCATGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAAC  200

seq1  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGAT  250

seq1  ATGGGCAGAGGGGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGT  299
      ||||||| ||||||||| ||||||||||||||||||||||| ||||||||
seq2  ATGGGCACAGGGGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGT  300

seq1  GAGGTAGAGAATCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  349
       || | |||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCA  350

seq1  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAA  400

seq1  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATA  450

seq1  TAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATA  499
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TAAAGAATTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAA-A  499

seq1  AATGGGGCTCAGAACTGAACAAAGAATTC  528
      |||||||||||||||||    ||||||||
seq2  AATGGGGCTCAGAACTG----AAGAATTC  524

seq1: chr15_20306196_20307097
seq2: B6Ng01-033L04.g_66_956

seq1  GAATTCTCAGCTCCCCTTGCACCATGCCTGACTGTGGTTCTCACCTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCCCTTGCACCATGCCTGACTGTGGTTCTCACCTTGAT  50

seq1  GATACTGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAACTAAATGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGGATTGAACCTCTGAACCTGTAAGCCAGCCCCAACTAAATGTTG  100

seq1  TTTTATAAGAGTTCCCTTGGTCATGGTTTCTGTTTACAGCAGTAAATCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAGAGTTCCCTTGGTCATGGTTTCTGTTTACAGCAGTAAATCCC  150

seq1  TAACTAAAACACCTTCTAATCTATTTCCAAGGACATACAGATTCCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAAACACCTTCTAATCTATTTCCAAGGACATACAGATTCCATATC  200

seq1  AGAAGGAAAACTAAATCTGGGCTTCTTATATTAACTGGTCTGTGTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAACTAAATCTGGGCTTCTTATATTAACTGGTCTGTGTTATTA  250

seq1  TGTTTATAGTAGTCTAGTCAATGTAAAGCACCCACTAATCAAAATGAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATAGTAGTCTAGTCAATGTAAAGCACCCACTAATCAAAATGAATG  300

seq1  TAGCAATTTTATTTGCTTAATGTCATATATATAATAAATATAGGCCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATTTTATTTGCTTAATGTCATATATATAATAAATATAGGCCAATA  350

seq1  AAATAGCTTGTATGTACCTGGGAATATCAGAAATTCATTTAGTCTTAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCTTGTATGTACCTGGGAATATCAGAAATTCATTTAGTCTTAGAG  400

seq1  TTTAAGTAGATAGCTATATAAAAATAAAAGGAAAGGGGATGCAAAACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTAGATAGCTATATAAAAATAAAAGGAAAGGGGATGCAAAACTTA  450

seq1  ATATTTTAATATATAAAGAGTTCATGTAGAAATACTGCTTCAAGCCACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAATATATAAAGAGTTCATGTAGAAATACTGCTTCAAGCCACAT  500

seq1  TTCCTAAATGACAATGATTTGTTTTTTCCAATATTGAAAATAAGAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAAATGACAATGATTTGTTTTTTCCAATATTGAAAATAAGAATGTA  550

seq1  ATCATAATATAGAGATTTTATTAGATATTTTCTTCATTTACATTTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAATATAGAGATTTTATTAGATATTTTCTTCATTTACATTTCAAAT  600

seq1  GTTATCCCCTTTTCTCTTTATAGCTATCTGCTGAGAGGCGCTGCCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCTTTTCTCTTTATAGCTATCTGCTGAGAGGCGCTGCCAGTAC  650

seq1  CTGACCAATACAGAAGTGGATGCTCACAGTCATCCATTAGCCTGAGCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAATACAGAAGTGGATGCTCACAGTCATCCATTAGCCTGAGCCAA  700

seq1  TGAAGGAACTAGAGAAAGGATCCAAGGAGCTGAAGATGTTTGCAGCCCCA  750
      |||||||||||||||||||||||||||||||||||||| |||||| ||||
seq2  TGAAGGAACTAGAGAAAGGATCCAAGGAGCTGAAGATG-TTGCAG-CCCA  748

seq1  TAGGAAGAATATAGAGATTTTTAACGTTTATTTTTTTTTATTTCAAAATC  800
      ||||||||||||||||| |||||||||||||||||||||||||| |||||
seq2  TAGGAAGAATATAGAGA-TTTTAACGTTTATTTTTTTTTATTTC-AAATC  796

seq1  GTGAAATAACAATAACAATACTTAAAAATCACTTGAGTATTTTCTTTTGC  850
      ||| |||||||||||||||||||||||  ||||||||||||||||||   
seq2  GTG-AATAACAATAACAATACTTAAAATCCACTTGAGTATTTTCTTT--G  843

seq1  CCTAACAATACATTACTTACCTCCTGCTAAGTAAGTTATCCCAAAATTCA  900
      |||||||||||||||||||||||||||| ||| ||||||||  |||||||
seq2  CCTAACAATACATTACTTACCTCCTGCT-AGT-AGTTATCC--AAATTCA  889

seq1  AA  902
      ||
seq2  AA  891