BAC Information

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BAC

Clone NameB6Ng01-033L23
Chromosome6 (Build37)12 (Build37)
Map Location 147,586,392 - 147,586,50651,648,942 - 51,649,469
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSurb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh, EG622129, Ccdc91
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-033L23.bB6Ng01-033L23.g
ACCDH862711DH862712
length115642
definitionDH862711|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L23, 5' end.DH862712|Mus musculus domesticus DNA, BAC clone: B6Ng01-033L23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(147,586,392 - 147,586,506)(51,648,942 - 51,649,469)
sequence
cttatcacccataacgcagtgttgtggtggactctaaccccaagtttaag
ggctggtaacctcatctatttctttggtactttttaaatggggtgtgtgt
gtgtgtgtgtgtgtg
gaattcctgattggaatcaaataattgtacaaagtaagtttaaggagatg
gttttagttttgccagaaagatgtaataaagttagaatcgtgaatagaat
gtgtctcctcctcatagaataagtaaaggcttcataataagtaatgcaaa
tgagttttcataaattgcactaagaagagaaataggcttgggacagattt
gtgatcaaggaaaaacattctttctaggtcagatacaagagtgaagtcat
aggtgtgcaccatgataaaacaaggccatgtgaaactgttgctttgaatt
tataataagcttatagaatgaaacactactttggccttactatcagcatc
cttatgcaactccccttttgtgtaacattttatctctgtggtaattttat
aaaaaacttttgtctaagaagtataaaaagactgagagaaaaaaatgctc
tgatccatcaaccacatgtatttatatgtacatatatatatatatgtaca
tatatacatatatatatgtgtacgatatgtctacatatacttacatacat
acatatatacatatatatctatacatacatacagatagatatagattaga
tagatatagatatagatatagatatagatatagatatagata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_147586392_147586506
seq2: B6Ng01-033L23.b_52_166

seq1  CTTATCACCCATAACGCAGTGTTGTGGTGGACTCTAACCCCAAGTTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCACCCATAACGCAGTGTTGTGGTGGACTCTAACCCCAAGTTTAAG  50

seq1  GGCTGGTAACCTCATCTATTTCTTTGGTACTTTTTAAATGGGGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAACCTCATCTATTTCTTTGGTACTTTTTAAATGGGGTGTGTGT  100

seq1  GTGTGTGTGTGTGTG  115
      |||||||||||||||
seq2  GTGTGTGTGTGTGTG  115

seq1: chr12_51648942_51649469
seq2: B6Ng01-033L23.g_559_713 (reverse)

seq1  TATCTATACCTATATCTCCATCTCCATATCCATATCTATATCTATATCTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTATACAGTCACAAAACAACACGTCCAAGGGACTGCAAAGAGGAATGTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TTGACGTATATTTCTCTTTAAAACTTCTCCTTTTTAAATTTATTTTAACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGTCTATAACTGAAATAAAATGATACCACTTTCTCCCTCGCCTCCAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCCCGTTCCCCTTCTGCTGACAATATCTTTTTCATTTATTGTTTTGAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  TACATACAATTATTGTACACTTAGGACACAAGAAATGATCTGAAATGGAC  300
                                                        
seq2  --------------------------------------------------  0

seq1  TGACTTGCATTTATGGTTTGATATATATATCCTACTTCTCCACAGAGGTC  350
                           ||| ||||| |||  |||  |   |  ||
seq2  ---------------------TATCTATAT-CTATATCTATATCTATATC  28

seq1  TTACACATCTTTTAATCTTATTCCCAAATGGCCTAAAATAT-TATTTCT-  398
      |   | |||| |  ||||         ||   ||||  ||| | | ||| 
seq2  T---ATATCTAT--ATCT---------AT---CTAATCTATATCTATCTG  61

seq1  TTTGTAGGTAGCATTAT-TTTCTATTTTTTTTGTGCAAATGTACTGCTTT  447
      | |||| |||    ||| | | ||| | | |       ||||| ||  | 
seq2  TATGTATGTATAGATATATATGTATATATGT-------ATGTA-TG--TA  101

seq1  AG-ATATATAGGATTTTTTCAACATA-CATACACACACACACATATATAT  495
      || |||| |||          ||||| | |||||| | | | || |||||
seq2  AGTATATGTAG----------ACATATCGTACACATATATATATGTATAT  141

seq1  ACATACATATATATATGTATATATAATATATAT  528
      |  |||||||||||                   
seq2  ATGTACATATATAT-------------------  155