BAC Information

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BAC

Clone NameB6Ng01-034D04
Chromosome6 (Build37)
Map Location 107,446,930 - 107,612,235
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-034D04.bB6Ng01-034D04.g
ACCDH863022DH863023
length743217
definitionDH863022|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D04, 5' end.DH863023|Mus musculus domesticus DNA, BAC clone: B6Ng01-034D04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,611,483 - 107,612,235)(107,446,930 - 107,447,146)
sequence
gaattctattataaggttatgtgaagtcatttagtattattggaagaaaa
ataatggttttgctgccaacgtgtccctagctccagctgtgagtcttcct
tgtttccctctgaaccttccttgtgatctttgaacttgccctttctcttg
cctttcccattcttcctcccgagtcctagccttttcccttctctcctgat
ttttaattcaaatctgaactccaagttaaaatggcaagctggctctccat
gtccccatctgctgtctcacattctcttttcctggcttgttgtctctgaa
acagtccctcttttatatggtatttattataatttgttgttagtccatat
tcttaacatccctcattatttaacatgagcagtatttttgcttgtttgtt
ttatttttctgtgtttctcactgacacacccacaggacattcaataaaga
ccaagatggaagtatttgtgctcaacaaatactgcagtcaattgcaggat
tcctgttaataaagtttgagaacttcaagaatagccccaagattagatgc
ccctctattctgggccctgtgtactaactgatgaatttacggtccttccc
ctccccctcccccacatcttactctgctaggaatttcccatcatcatctc
tctggccctcattgcctcaggtgcaggagttgaatgatgtcttgagcaaa
aggaaaaagtctgctcttagcttttattcatctaacaatatat
acaagttaagcccagcaatgcctgaattttgttgtctgttgtattgtttc
catatttaattaatggcacttcagtgataaataaattttaaatgataaaa
ctaccaattagagccaagggatgtgataatttttttaaggtccacaaaga
ttacttaaaattctaagactttaaaaaatacagtcagaggacagattggt
ggggagggagggggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107611483_107612235
seq2: B6Ng01-034D04.b_43_785 (reverse)

seq1  ATAT-TTGTTAGGATGAATAAAAAGCCTAGAGCAGGACTGTCTCCTTTTG  49
      |||| |||||| ||||||| ||||||  |||||| |||| | ||||||||
seq2  ATATATTGTTA-GATGAAT-AAAAGCTAAGAGCA-GACTTTTTCCTTTTG  47

seq1  CTCAAGAACATCATTCCAACTCCTTGCACCTTGGAGGCAAATGAGGG-CA  98
      |||||| |||||||| ||||||| |||||||  ||||| |||||||| ||
seq2  CTCAAG-ACATCATT-CAACTCC-TGCACCT--GAGGC-AATGAGGGCCA  91

seq1  GAGAGATGAATGATGGGAAATTCCTAGCAAGAGTAAGGATGTGGGGGAGG  148
      |||||||| ||||||||||||||||||| ||||||| |||||||||||||
seq2  GAGAGATG-ATGATGGGAAATTCCTAGC-AGAGTAA-GATGTGGGGGAGG  138

seq1  GGGAGGGGAAGGACCGTAAATTCATCAGTTAGTACACAGGGCCCAGAATA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGAAGGACCGTAAATTCATCAGTTAGTACACAGGGCCCAGAATA  188

seq1  GAGGGGCATCTATTCTTGGGGCTATTCTTGAAGTTTCTCAAACTTTATTA  248
      |||||||||||| |||||||||||||||||||| ||||||||||||||||
seq2  GAGGGGCATCTAATCTTGGGGCTATTCTTGAAG-TTCTCAAACTTTATTA  237

seq1  ACAGGAATCCTGCAATTGACTGCAGTATTTGTTGAGCACAAATACTTCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATCCTGCAATTGACTGCAGTATTTGTTGAGCACAAATACTTCCA  287

seq1  TCTTGGTCTTTATTGAATGTCCTGTGGGTGTGTCAGTGAGAAACACAG-A  347
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTTGGTCTTTATTGAATGTCCTGTGGGTGTGTCAGTGAGAAACACAGAA  337

seq1  AAATAAAACAAACAAGCAAAAATACTGCTCATGTTAAATAATGAGGGATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACAAACAAGCAAAAATACTGCTCATGTTAAATAATGAGGGATG  387

seq1  TTAAGAATATGGACTAACAACAAATTATAATAAATACCATATAAAAGAGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAATATGGACTAACAACAAATTATAATAAATACCATATAAAAGAGG  437

seq1  GACTGTTTCAGAGACAACAAGCCAGGAAAAGAGAATGTGAGACAGCAGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTTCAGAGACAACAAGCCAGGAAAAGAGAATGTGAGACAGCAGAT  487

seq1  GGGGACATGGAGAGCCAGCTTGCCATTTTAACTTGGAGTTCAGATTTGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACATGGAGAGCCAGCTTGCCATTTTAACTTGGAGTTCAGATTTGAA  537

seq1  TTAAAAATCAGGAGAGAAGGGAAAAGGCTAGGACTCGGGAGGAAGAATGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCAGGAGAGAAGGGAAAAGGCTAGGACTCGGGAGGAAGAATGG  587

seq1  GAAAGGCAAGAGAAAGGGCAAGTTCAAAGATCACAAGGAAGGTTCAGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAAGAGAAAGGGCAAGTTCAAAGATCACAAGGAAGGTTCAGAGG  637

seq1  GAAACAAGGAAGACTCACAGCTGGAGCTAGGGACACGTTGGCAGCAAAAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAGGAAGACTCACAGCTGGAGCTAGGGACACGTTGGCAGCAAAAC  687

seq1  CATTATTTTTCTTCCAATAATACTAAATGACTTCACATAACCTTATAATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTTCTTCCAATAATACTAAATGACTTCACATAACCTTATAATA  737

seq1  GAATTC  753
      ||||||
seq2  GAATTC  743

seq1: chr6_107446930_107447146
seq2: B6Ng01-034D04.g_71_287

seq1  ACAAGTTAAGCCCAGCAATGCCTGAATTTTGTTGTCTGTTGTATTGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTAAGCCCAGCAATGCCTGAATTTTGTTGTCTGTTGTATTGTTTC  50

seq1  CATATTTAATTAATGGCACTTCAGTGATAAATAAATTTTAAATGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTAATTAATGGCACTTCAGTGATAAATAAATTTTAAATGATAAAA  100

seq1  CTACCAATTAGAGCCAAGGGATGTGATAATTTTTTTAAGGTCCACAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAATTAGAGCCAAGGGATGTGATAATTTTTTTAAGGTCCACAAAGA  150

seq1  TTACTTAAAATTCTAAGACTTTAAAAAATACAGTCAGAGGACAGATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAAAATTCTAAGACTTTAAAAAATACAGTCAGAGGACAGATTGGT  200

seq1  GGGGAGGGAGGGGGTGA  217
      |||||||||||||||||
seq2  GGGGAGGGAGGGGGTGA  217