BAC Information

Click to search

BAC

Clone NameB6Ng01-035M06
Chromosome6 (Build37)
Map Location 135,691,947 - 135,826,408
singlet/doubletdoublet
Overlap geneGrin2b
Upstream geneDusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890, Emp1
Downstream geneEG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-035M06.bB6Ng01-035M06.g
ACCDH864145DH864146
length926843
definitionDH864145|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M06, 5' end.DH864146|Mus musculus domesticus DNA, BAC clone: B6Ng01-035M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,691,947 - 135,692,895)(135,825,555 - 135,826,408)
sequence
gaattctcccttctatcaagttggcccaaaatgatccctcagtacttgtt
attctggtttagagtcctagattgattctataaattcagcgactccctat
gtctactgactaagtaccgagaactagaccttcatgcggtcattaatagt
ttaagcttgagattaaaacagatatgatgaccaactctgccacttactac
ttaatgactgtgttccttgacagaaaagatgtacctcttcttcctccata
ataaggagttgatgatgcccagttttcaagaatgtaaaataagtacttgg
cacagcacctgatagatacaccatagggttgcctgacacaaaccaggtca
ctgggttagagggttttcaactgagaaaatgcctggagcagactgaactg
taggcgaatctctaaggcattttcttgattaatgattgatatgggagggc
ccagtctactatactaggtggtcctggatttatcaaaaaatcaggcttga
acaagaaatggagagcaagacaggaagcagcactttcgtcgtcatgattt
ttgcttcagtccctgcctgcttgagttcttacctttgcttccctcattga
tgggactgtgattggtacatggaatgcaatagccccctccccccatattc
cctttgggtctggcctttatcacagccaccaaaagcccactagacagatg
ctagtgattggtcccttttgtttaatcctgttcaattagttttgttttgc
tgataaaacgcaggtaccttatgttcttgcctgtagtatatctaaaaatg
acacaaaattgggctaaaagtgtccctggcttaaggggacacttgcaggt
gttaaagggtccggtttcaatcgctttgttttttgttccttggaccgttt
tgaaacctagcccctaccagggccca
gaattcccccttggccctctagagagcgctctagagagcgctatgtgcct
tacccactggtgtccagtagcctgccccactatgacatagaggttctgaa
tacactgtttcttaggtaaagggtacgctttcattctttgctttcaggca
cagaatagaaatatgctaacaacagtcctgaacatctaaacgagtcttta
tttccctctcaaagccaccacacacagagccctctggctcacactcttga
ccaatctcaggccctaccctgcctgggcattgtatggaaatgctacctta
tgaccatgcactgatacaaaatatctgatgttttttaaaaagtaagcctt
gattgagttgttcattgacacagcatatttaacttttctatagattcata
aaatcctaatgaccgtgagaggtagcattactggagtgggaggggctatt
atataaatgaagaacaactggaccactctgctatgatttttagctcgttg
ttgctgagctactggattcaggcagaatgaatgtgaggatgcatactgat
ttgggtgctgtccctatgagatctgcggcgccacctgatgctaggataga
tgagccctccttccttgactgtaccttcacggaagaaaagggcacaatgg
ggagtggttgaggtttgacatttattggcttttgctttaagaatgaaagc
caaacagattccgtttgcacagcagagcggattagatcaaggagccgacc
aaagccctagaatattttcatcttattatatttcgtgcttctaaaatccc
tttccacctacctccatggccacaagagaagacttcgacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_135691947_135692895
seq2: B6Ng01-035M06.b_45_970

seq1  GAATTCTCCCTTCTATCAAGTTGGCCCAAAATGATCCCTCAGTACTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTCTATCAAGTTGGCCCAAAATGATCCCTCAGTACTTGTT  50

seq1  ATTCTGGTTTAGAGTCCTAGATTGATTCTATAAATTCAGCGACTCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGTTTAGAGTCCTAGATTGATTCTATAAATTCAGCGACTCCCTAT  100

seq1  GTCTACTGACTAAGTACCGAGAACTAGACCTTCATGCGGTCATTAATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTGACTAAGTACCGAGAACTAGACCTTCATGCGGTCATTAATAGT  150

seq1  TTAAGCTTGAGATTAAAACAGATATGATGACCAACTCTGCCACTTACTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTTGAGATTAAAACAGATATGATGACCAACTCTGCCACTTACTAC  200

seq1  TTAATGACTGTGTTCCTTGACAGAAAAGATGTACCTCTTCTTCCTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACTGTGTTCCTTGACAGAAAAGATGTACCTCTTCTTCCTCCATA  250

seq1  ATAAGGAGTTGATGATGCCCAGTTTTCAAGAATGTAAAATAAGTACTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGTTGATGATGCCCAGTTTTCAAGAATGTAAAATAAGTACTTGG  300

seq1  CACAGCACCTGATAGATACACCATAGGGTTGCCTGACACAAACCAGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCACCTGATAGATACACCATAGGGTTGCCTGACACAAACCAGGTCA  350

seq1  CTGGGTTAGAGGGTTTTCAACTGAGAAAATGCCTGGAGCAGACTGAACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTAGAGGGTTTTCAACTGAGAAAATGCCTGGAGCAGACTGAACTG  400

seq1  TAGGCGAATCTCTAAGGCATTTTCTTGATTAATGATTGATATGGGAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGAATCTCTAAGGCATTTTCTTGATTAATGATTGATATGGGAGGGC  450

seq1  CCAGTCTACTATACTAGGTGGTCCTGGATTTATCAAAAAATCAGGCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTACTATACTAGGTGGTCCTGGATTTATCAAAAAATCAGGCTTGA  500

seq1  ACAAGAAATGGAGAGCAAGACAGGAAGCAGCAC-TTCGTCGTCATGATTT  549
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACAAGAAATGGAGAGCAAGACAGGAAGCAGCACTTTCGTCGTCATGATTT  550

seq1  TTGCTTCAGTCCCTGCCTGCTTGAGTTCTTACCTTTGCTTCCCTCATTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCAGTCCCTGCCTGCTTGAGTTCTTACCTTTGCTTCCCTCATTGA  600

seq1  T-GGACTGTGATTGGTACATGGAATGCAATAGCCCCTTCCCCCCATATTC  648
      | |||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TGGGACTGTGATTGGTACATGGAATGCAATAGCCCCCTCCCCCCATATTC  650

seq1  CCTTTGGGTCTGGCCTTTATCACAGCAACAGAAAGCACACTAAGACAGAT  698
      |||||||||||||||||||||||||| ||  ||||| |||| ||||||||
seq2  CCTTTGGGTCTGGCCTTTATCACAGCCACCAAAAGCCCACT-AGACAGAT  699

seq1  GCTCAGTGATTGGTCCCATATTGTTCTAAATCCATGTTCATATTAGTTTT  748
      ||| ||||||||||||| | ||||  | ||||| |||||| |||||||||
seq2  GCT-AGTGATTGGTCCC-TTTTGT--TTAATCC-TGTTCA-ATTAGTTTT  743

seq1  GTTTTGCTGATAAAACAGCAGGCTACCTAATGTTCTTGTCCTGTAAGTAT  798
      |||||||||||||||| ||||| ||||| ||||||||| ||||| |||||
seq2  GTTTTGCTGATAAAAC-GCAGG-TACCTTATGTTCTTG-CCTGT-AGTAT  789

seq1  ATCT-AAGATGACACAGAATATGGGCATAAAGCTGTCCCTTGGCATAGAG  847
      |||| || |||||||| ||| ||||| ||||  |||||| |||| || ||
seq2  ATCTAAAAATGACACAAAAT-TGGGC-TAAAAGTGTCCC-TGGCTTA-AG  835

seq1  GGGACAC-TGCAGGTGTTTAAAGTGCTCTGGATTTCAAT-GCTATTGCTA  895
      ||||||| |||||||| |||||| | || || ||||||| ||| |||   
seq2  GGGACACTTGCAGGTG-TTAAAG-GGTCCGG-TTTCAATCGCT-TTG---  878

seq1  TTATTTGTTACCTTGGAGCTGTATTTGAAAACCTAGCCCACTAACCAGGG  945
      || |||||| ||||||| | || |||| ||||||||||| || |||||||
seq2  TTTTTTGTT-CCTTGGA-CCGT-TTTG-AAACCTAGCCC-CT-ACCAGGG  922

seq1  CCCA  949
      ||||
seq2  CCCA  926

seq1: chr6_135825555_135826408
seq2: B6Ng01-035M06.g_67_909 (reverse)

seq1  TTATGTCTGAAGGTCTTTCTC-TGTGGCCATGGAGGTAGGTGGAAAGGGA  49
      ||||||| ||| ||| ||||| ||||||||||||||||||||||||||||
seq2  TTATGTC-GAA-GTC-TTCTCTTGTGGCCATGGAGGTAGGTGGAAAGGGA  47

seq1  TTTTTAGAAGCACGAAATTATAATAAGATGAAAATATTCTTAGGGCTTTG  99
       |||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  -TTTTAGAAGCACGAAA-TATAATAAGATGAAAATATTC-TAGGGCTTTG  94

seq1  GTCTGGCTCCTTGATCTTAATCCGCTTCTGCTGTGGCAAACGGAATCTTG  149
      ||| |||||||||||| |||||||| |||||||| |||||||||||| ||
seq2  GTC-GGCTCCTTGATC-TAATCCGC-TCTGCTGT-GCAAACGGAATC-TG  139

seq1  TTTGGCTTTCATTCTTAAAGCAAAAAGCCAATAAATGTCAAACCTCAACC  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTGGCTTTCATTCTTAAAGC-AAAAGCCAATAAATGTCAAACCTCAACC  188

seq1  ACTCCCCATTGTGCCCTTTTCTTCCGTGAAGGTACAGTCAAGGAAGGAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCATTGTGCCCTTTTCTTCCGTGAAGGTACAGTCAAGGAAGGAGG  238

seq1  GCTCATCTATCCTAGCATCAGGTGGCGCCGCAGATCTCATAGGGACAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATCTATCCTAGCATCAGGTGGCGCCGCAGATCTCATAGGGACAGCA  288

seq1  CCCAAATCAGTATGCATCCTCACATTCATTCTGCCTGAATCCAGTAGCTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCAGTATGCATCCTCACATTCATTCTGCCTGAATCCAGTAGCTC  338

seq1  AGCAACAACGAGCTAAAAATCATAGCAGAGTGGTCCAGTTGTTCTTCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAACGAGCTAAAAATCATAGCAGAGTGGTCCAGTTGTTCTTCATT  388

seq1  TATATAATAGCCCCTCCCACTCCAGTAATGCTACCTCTCACGGTCATTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAATAGCCCCTCCCACTCCAGTAATGCTACCTCTCACGGTCATTAG  438

seq1  GATTTTATGAATCTATAGAAAAGTTAAATATGCTGTGTCAATGAACAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATGAATCTATAGAAAAGTTAAATATGCTGTGTCAATGAACAACT  488

seq1  CAATCAAGGCTTACTTTTTAAAAAACATCAGATATTTTGTATCAGTGCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGGCTTACTTTTTAAAAAACATCAGATATTTTGTATCAGTGCAT  538

seq1  GGTCATAAGGTAGCATTTCCATACAATGCCCAGGCAGGGTAGGGCCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAAGGTAGCATTTCCATACAATGCCCAGGCAGGGTAGGGCCTGAG  588

seq1  ATTGGTCAAGAGTGTGAGCCAGAGGGCTCTGTGTGTGGTGGCTTTGAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCAAGAGTGTGAGCCAGAGGGCTCTGTGTGTGGTGGCTTTGAGAG  638

seq1  GGAAATAAAGACTCGTTTAGATGTTCAGGACTGTTGTTAGCATATTTCTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAGACTCGTTTAGATGTTCAGGACTGTTGTTAGCATATTTCTA  688

seq1  TTCTGTGCCTGAAAGCAAAGAATGAAAGCGTACCCTTTACCTAAGAAACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGCCTGAAAGCAAAGAATGAAAGCGTACCCTTTACCTAAGAAACA  738

seq1  GTGTATTCAGAACCTCTATGTCATAGTGGGGCAGGCTACTGGACACCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTCAGAACCTCTATGTCATAGTGGGGCAGGCTACTGGACACCAGT  788

seq1  GGGTAAGGCACATAGCGCTCTCTAGAGCGCTCTCTAGAGGGCCAAGGGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGCACATAGCGCTCTCTAGAGCGCTCTCTAGAGGGCCAAGGGGG  838

seq1  AATTC  854
      |||||
seq2  AATTC  843