BAC Information

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BAC

Clone NameB6Ng01-036M05
Chromosome6 (Build37)
Map Location 113,695,692 - 113,865,495
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M05.bB6Ng01-036M05.g
ACCDH864834DH864835
length927216
definitionDH864834|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M05, 5' end.DH864835|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,864,584 - 113,865,495)(113,695,692 - 113,695,907)
sequence
gaattccactccgaggggaccagaagcacgagatgaaggcatccatggct
tactcctccaaaggccacggggctggttcattctgagcctccctcttagc
tcctcgtagcttgctggctgtctctgaccttccttggcatgtagacgtgt
ccctccacgcccttccatagcctcttcttcccactgcacatctgtctctg
tgtccaaagatcccaccttatgagaaagctaagtcccatcaggtcagggc
caccttatggcctcatgcccacttccattatggaagaccatatttccaaa
tgaagccacgtccatagagcctgaggattagggctcccacatgcatgtta
gacaagacattgttcactccctgattgctttgtgactgtgttgatctcca
gtgcccatgaatttacttatgactttgggaatcccaatgattcaaagaca
attacatcattttctaagatgaaaatgttcctcaaattttctgctccttt
agctcccaggggctgtcctgccagcttctggcttcatggggtctatctgg
gtccaccagtccaagctctcccatgaaaagtaggaagatttgagactttt
ctttttcagcaccactggccactcgacaccaggacagcatgacaagtcag
gggctccatctgtggggtagtctcaggtaggaatgtgggtaggaatacca
cggcaccagggtcctccccagaaatggtcttcatggagtgagggagtcta
gaagccctgagggctccacctgccccaagcatccacatacactgagaatg
ccctcaggacatgggagttacaaagagatcccaagacattgcccagttga
tctggaatagggggaggggtagacgctgggttctttttattcttactgtt
caccctctctgagttaggggtcggaga
tttatttacaattattgtctagataaaaaaattcataaaaacagatgaat
ggtcataaattattgaccccctaatggggtgaactgccaaacgtatccca
tgctgctagatataggacgcagaagtgcaagcttgtgtattacagtgagt
tctgacaaaccaaccatctcctgtgtaggtgtgtgtgtgtatggaagagt
gtgagagtgaggggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113864584_113865495
seq2: B6Ng01-036M05.b_44_952 (reverse)

seq1  GAGAGGGTGAACAGTAAGGAATTAAAAAGAACACAGGCGTCTACCCCTCC  50
      ||||||||||||||||||  | |||||||||| || ||||||||||||||
seq2  GAGAGGGTGAACAGTAAG--AATAAAAAGAACCCA-GCGTCTACCCCTCC  47

seq1  CCCTATTCCAGATCAACTGGGCAATGTCTTGGGATCTCTTTGTAACTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATTCCAGATCAACTGGGCAATGTCTTGGGATCTCTTTGTAACTCCC  97

seq1  ATGTCCTGAGGGCATTCTCAGTGTATGTGGATGCCTGGGGCAGGTGGAGC  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTCCTGAGGGCATTCTCAGTGTATGTGGATGCTTGGGGCAGGTGGAGC  147

seq1  CCTCAGGGCTTCTAGACTCCCTCACTCCATGAAGACCATTTCTGGGGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGGCTTCTAGACTCCCTCACTCCATGAAGACCATTTCTGGGGAGG  197

seq1  ACCCTGGTGCCGTGGTATTCCTACCCACATTCCTACCTGAGACTACCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGTGCCGTGGTATTCCTACCCACATTCCTACCTGAGACTACCCCA  247

seq1  CAGATGGAGCCCCTGACTTGTCATGCTGTCCTGGTGTCGAGTGGCCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGAGCCCCTGACTTGTCATGCTGTCCTGGTGTCGAGTGGCCAGTG  297

seq1  GTGCTGAAAAAGAAAAGTCTCAAATCTTCCTACTTTTCATGGGAGAGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAAAAGAAAAGTCTCAAATCTTCCTACTTTTCATGGGAGAGCTT  347

seq1  GGACTGGTGGACCCAGATAGACCCCATGAAGCCAGAAGCTGGCAGGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGTGGACCCAGATAGACCCCATGAAGCCAGAAGCTGGCAGGACAG  397

seq1  CCCCTGGGAGCTAAAGGAGCAGAAAATTTGAGGAACATTTTCATCTTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGAGCTAAAGGAGCAGAAAATTTGAGGAACATTTTCATCTTAGA  447

seq1  AAATGATGTAATTGTCTTTGAATCATTGGGATTCCCAAAGTCATAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATGTAATTGTCTTTGAATCATTGGGATTCCCAAAGTCATAAGTAA  497

seq1  ATTCATGGGCACTGGAGATCAACACAGTCACAAAGCAATCAGGGAGTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGGCACTGGAGATCAACACAGTCACAAAGCAATCAGGGAGTGAA  547

seq1  CAATGTCTTGTCTAACATGCATGTGGGAGCCCTAATCCTCAGGCTCTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTCTTGTCTAACATGCATGTGGGAGCCCTAATCCTCAGGCTCTATG  597

seq1  GACGTGGCTTCATTTGGAAATATGGTCTTCCATAATGGAAGTGGGCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGGCTTCATTTGGAAATATGGTCTTCCATAATGGAAGTGGGCATGA  647

seq1  GGCCATAAGGTGGCCCTGACCTGATGGGACTTAGCTTTCTCATAAGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAAGGTGGCCCTGACCTGATGGGACTTAGCTTTCTCATAAGGTGG  697

seq1  GATCTTTGGACACAGAGACAGATGTGCAGTGGGAAGAAGAGGCTATGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGGACACAGAGACAGATGTGCAGTGGGAAGAAGAGGCTATGGAA  747

seq1  GGGCGTGGAGGGACACGTCTACATGCCAAGGAAGGTCAGAGACAGCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTGGAGGGACACGTCTACATGCCAAGGAAGGTCAGAGACAGCCAGC  797

seq1  AAGCTACGAGGAGCTAAGAGGGAGGCTCAGAATGAACCAGCCCCGTGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTACGAGGAGCTAAGAGGGAGGCTCAGAATGAACCAGCCCCGTGGCC  847

seq1  TTTGGAGGAGTAAGCCATGGATGCCTTCATCTCGTGCTTCTGGTCCCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGGAGTAAGCCATGGATGCCTTCATCTCGTGCTTCTGGTCCCCTC  897

seq1  GGAGTGGAATTC  912
      ||||||||||||
seq2  GGAGTGGAATTC  909

seq1: chr6_113695692_113695907
seq2: B6Ng01-036M05.g_74_289

seq1  TTTATTTACAATTATTGTCTAGATAAAAAAATTCATAAAAACAGATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTACAATTATTGTCTAGATAAAAAAATTCATAAAAACAGATGAAT  50

seq1  GGTCATAAATTATTGACCCCCTAATGGGGTGAACTGCCAAACGTATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATAAATTATTGACCCCCTAATGGGGTGAACTGCCAAACGTATCCCA  100

seq1  TGCTGCTAGATATAGGACGCAGAAGTGCAAGCTTGTGTATTACAGTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTAGATATAGGACGCAGAAGTGCAAGCTTGTGTATTACAGTGAGT  150

seq1  TCTGACAAACCAACCATCTCCTGTGTAGGTGTGTGTGTGTATGGAAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAAACCAACCATCTCCTGTGTAGGTGTGTGTGTGTATGGAAGAGT  200

seq1  GTGAGAGTGAGGGGCT  216
      ||||||||||||||||
seq2  GTGAGAGTGAGGGGCT  216