BAC Information

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BAC

Clone NameB6Ng01-036M20
Chromosome6 (Build37)
Map Location 119,977,669 - 120,122,399
singlet/doubletdoublet
Overlap geneWnk1, Ninj2
Upstream geneCacna1c, Dcp1b, Cacna2d4, Lrtm2, Adipor2, Wnt5b, Fbxl14, Erc1, LOC666887, Rad52, EG406236
Downstream geneB4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-036M20.bB6Ng01-036M20.g
ACCDH864862DH864863
length941809
definitionDH864862|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M20, 5' end.DH864863|Mus musculus domesticus DNA, BAC clone: B6Ng01-036M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,977,669 - 119,978,609)(120,121,587 - 120,122,399)
sequence
gaattcagagatctacctgtctctgcctccctagtgctgggattataggc
agtgccagcaaaccctgagcatgtcagtggtcttaaacaagcggttaaac
ctgaatttgtttcctcaaatataaaagtcaaaaaactatactatctgccc
tgtagtgcagctgtgaagttacaaataatttatacagtggtgttaggcaa
gcaagtaactgtcagtaatttttaattacctttcctcagtaattataaag
aattcaccttgcaagcactcttaaatataaagcctaaagtactacatgtg
tgtagagtatttaaacttttgtttaaaaataaaaaacaaaatactaaaac
aataattcaaaactttctgtataacagaatttacttaaaatcttgctatt
ttaaatgagctggtcagatggctcagtggtaaaagtacctgacaacccaa
agttccacctctggaacccttaatgaaagaaaagaactatcctaaaagct
gccctctgaaggacacagatgcactgaagcacatatgctcctatacattt
gtgaaagtcaagggacaactttcaggattccattttctccttccactatc
tgagtccctggaatcaaactcaggtcaacagacttggtggcaagcagcgt
tacttgctgagccatcttacaaactgtcaattatttattttttattattt
taagtatatatatatgtatatatatatacttatatatatatatatatata
tgtctttgtgtggaatgttcataaataactcaaaggacaaaataaaaatg
acactgtattgtgctggagagatggcttagaggtttagaagcaccgaact
gctcttccagaggtcctgagttcaatcctagcaaccacaatggtggctcc
caccatctgtaatgggatctgatgccctcttctgatgtgtc
gaattcctcgccctgggaaccagctgccacgtcatcagcctagcatccta
tggaaatggcaagagactgaaccttgaacaggaagcagcactccttggcc
aacctgccagctttgtgcacgggtcttccttttctctttttggaaacaga
gtttagctttgttggccaagctgcctcaaactcctgggaagcaatcctcc
tgcctcaggagtgagggggactgcaggtatggagcactggttcagacttg
agtgagcaagcagaaaagtggcccctttcgagggtctgggtctggctgac
gtcctgaatgcaatcccgtgggcttcaaaggcagagccactcctgaatcc
caacccacagaagctcactgctcctctgctggctgtgttgcctgtgccca
ccggctagatctagaccggcgttagacttaggatgcatttgggggaggag
ttgttttaccagcacactgaacacacaattctccattacaggtatgttcc
tctcagcctagtgaaatgtcatggtgtactatcagtctatatctttgctc
catcatgcccgatctccttttgacatccctgtttgatatccccagcttta
ccacatcgggcttaggtatgggtttcagcgcctcctttccctttctttgt
gtgcatggtatttggatgtgtgcgtgtgggctgcttgggtgcggcggtgc
acatgcctctctgaggatgcacacagagagcacagggttgcatgtcttcc
ttaactgctccatggaagacaggccgcacttccttcaaaggattcacatt
ggtgaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_119977669_119978609
seq2: B6Ng01-036M20.b_46_986

seq1  GAATTCAGAGATCTACCTGTCTCTGCCTCCCTAGTGCTGGGATTATAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATCTACCTGTCTCTGCCTCCCTAGTGCTGGGATTATAGGC  50

seq1  AGTGCCAGCAAACCCTGAGCATGTCAGTGGTCTTAAACAAGCGGTTAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCAGCAAACCCTGAGCATGTCAGTGGTCTTAAACAAGCGGTTAAAC  100

seq1  CTGAATTTGTTTCCTCAAATATAAAAGTCAAAAAACTATACTATCTGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTGTTTCCTCAAATATAAAAGTCAAAAAACTATACTATCTGCCC  150

seq1  TGTAGTGCAGCTGTGAAGTTACAAATAATTTATACAGTGGTGTTAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGCAGCTGTGAAGTTACAAATAATTTATACAGTGGTGTTAGGCAA  200

seq1  GCAAGTAACTGTCAGTAATTTTTAATTACCTTTCCTCAGTAATTATAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTAACTGTCAGTAATTTTTAATTACCTTTCCTCAGTAATTATAAAG  250

seq1  AATTCACCTTGCAAGCACTCTTAAATATAAAGCCTAAAGTACTACATGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACCTTGCAAGCACTCTTAAATATAAAGCCTAAAGTACTACATGTG  300

seq1  TGTAGAGTATTTAAACTTTTGTTTAAAAATAAAAAACAAAATACTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAGTATTTAAACTTTTGTTTAAAAATAAAAAACAAAATACTAAAAC  350

seq1  AATAATTCAAAACTTTCTGTATAACAGAATTTACTTAAAATCTTGCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCAAAACTTTCTGTATAACAGAATTTACTTAAAATCTTGCTATT  400

seq1  TTAAATGAGCTGGTCAGATGGCTCAGTGGTAAAAGTACCTGACAACCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGCTGGTCAGATGGCTCAGTGGTAAAAGTACCTGACAACCCAA  450

seq1  AGTTCCACCTCTGGAACCCTTAATGAAAGAAAAGAACTATCCTAAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCACCTCTGGAACCCTTAATGAAAGAAAAGAACTATCCTAAAAGCT  500

seq1  GCCCTCTGAAGGACACAGATGCACTGAAGCACATATGCTCCTATACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGAAGGACACAGATGCACTGAAGCACATATGCTCCTATACATTT  550

seq1  GTGAAAGTCAAGGGACAACTTTCAGGATTCCATTTTCTCCTTCCACTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTCAAGGGACAACTTTCAGGATTCCATTTTCTCCTTCCACTATC  600

seq1  TGAGTCCCTGGAATCAAACTCAGGTCAACAGACTTGGTGGCAAGCAGCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCCCTGGAATCAAACTCAGGTCAACAGACTTGGTGGCAAGCAGCGT  650

seq1  TACTTGCTGAGCCATCTTACAAACTGTCAATTATTTA-TTTTTATTATTT  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TACTTGCTGAGCCATCTTACAAACTGTCAATTATTTATTTTTTATTATTT  700

seq1  TAAGTATATATATATGTATATATATATACTTATATATATATATATATATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATATATATATGTATATATATATACTTATATATATATATATATATA  750

seq1  TGTCTTTGTGTGGAATGTTCATAAATAACCTCAAAAGGACAAAATAAAAA  799
      |||||||||||||||||||||||||||| ||| |||||||||||||||||
seq2  TGTCTTTGTGTGGAATGTTCATAAATAA-CTC-AAAGGACAAAATAAAAA  798

seq1  TGACACTGTATGGGGCTGGAGAGATGGCTCAGAGGTTAAG-AGCACCG-A  847
      ||||||||||| | ||||||||||||||| ||||||| || ||||||| |
seq2  TGACACTGTATTGTGCTGGAGAGATGGCTTAGAGGTTTAGAAGCACCGAA  848

seq1  CTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCAC-ATGGTGGC  896
      ||||||||||||||||||||||||||| ||| ||||||||| ||||||||
seq2  CTGCTCTTCCAGAGGTCCTGAGTTCAA-TCCTAGCAACCACAATGGTGGC  897

seq1  TCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGATGTGTC  941
      || | ||||||||||||||||||||||||||||||||||||||||
seq2  TC-CCACCATCTGTAATGGGATCTGATGCCCTCTTCTGATGTGTC  941

seq1: chr6_120121587_120122399
seq2: B6Ng01-036M20.g_68_876 (reverse)

seq1  ATGGTCACCCATGTGAATCCCTTTGAGGAAGTGCGGCCTGTCTTCCATGG  50
      ||||||||| |||||||||| ||  |||||||||||||||||||||||||
seq2  ATGGTCACCAATGTGAATCCTTTGAAGGAAGTGCGGCCTGTCTTCCATGG  50

seq1  AGCAGTTAAGGAAGACATGCAACCCTGTGCTCTCTGTGTGCATCCTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTAAGGAAGACATGCAACCCTGTGCTCTCTGTGTGCATCCTCAGA  100

seq1  GAGGCATGTGCACCCGCCCGCACCCACGCAGCCCCACACGCACACATCCA  150
      ||||||||||||||   ||||||||| |||| ||||||||||||||||||
seq2  GAGGCATGTGCACC--GCCGCACCCAAGCAG-CCCACACGCACACATCCA  147

seq1  TATACCATGCACACAAAGAAAGGGAAAGGAGGCGCTGAAAACCCATACCT  200
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATACCATGCACACAAAGAAAGGGAAAGGAGGCGCTG-AAACCCATACCT  196

seq1  AAGCCCGATGTGGTAAAGCTGGGGATATCAAACAGGGATGTCAAAAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCGATGTGGTAAAGCTGGGGATATCAAACAGGGATGTCAAAAGGAG  246

seq1  ATCGGGCATGATGGAGCAAAGATATAGACTGATAGTACACCATGACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGGCATGATGGAGCAAAGATATAGACTGATAGTACACCATGACATTT  296

seq1  CACTAGGCTGAGAGGAACATACCTGTAATGGAGAATTGTGTGTTCAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGCTGAGAGGAACATACCTGTAATGGAGAATTGTGTGTTCAGTGT  346

seq1  GCTGGTAAAACAACTCCTCCCCCAAATGCATCCTAAGTCTAACGCCGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTAAAACAACTCCTCCCCCAAATGCATCCTAAGTCTAACGCCGGTC  396

seq1  TAGATCTAGCCGGTGGGCACAGGCAACACAGCCAGCAGAGGAGCAGTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCTAGCCGGTGGGCACAGGCAACACAGCCAGCAGAGGAGCAGTGAG  446

seq1  CTTCTGTGGGTTGGGATTCAGGAGTGGCTCTGCCTTTGAAGCCCACGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGGGTTGGGATTCAGGAGTGGCTCTGCCTTTGAAGCCCACGGGA  496

seq1  TTGCATTCAGGACGTCAGCCAGACCCAGACCCTCGAAAGGGGCCACTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTCAGGACGTCAGCCAGACCCAGACCCTCGAAAGGGGCCACTTTT  546

seq1  CTGCTTGCTCACTCAAGTCTGAACCAGTGCTCCATACCTGCAGTCCCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCTCACTCAAGTCTGAACCAGTGCTCCATACCTGCAGTCCCCCT  596

seq1  CACTCCTGAGGCAGGAGGATTGCTTCCCAGGAGTTTGAGGCAGCTTGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTGAGGCAGGAGGATTGCTTCCCAGGAGTTTGAGGCAGCTTGGCC  646

seq1  AACAAAGCTAAACTCTGTTTCCAAAAAGAGAAAAGGAAGACCCGTGCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCTAAACTCTGTTTCCAAAAAGAGAAAAGGAAGACCCGTGCACA  696

seq1  AAGCTGGCAGGTTGGCCAAGGAGTGCTGCTTCCTGTTCAAGGTTCAGTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGGCAGGTTGGCCAAGGAGTGCTGCTTCCTGTTCAAGGTTCAGTCT  746

seq1  CTTGCCATTTCCATAGGATGCTAGGCTGATGACGTGGCAGCTGGTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCATTTCCATAGGATGCTAGGCTGATGACGTGGCAGCTGGTTCCCA  796

seq1  GGGCGAGGAATTC  813
      |||||||||||||
seq2  GGGCGAGGAATTC  809