BAC Information

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BAC

Clone NameB6Ng01-039G06
Chromosome6 (Build37)1 (Build37)
Map Location 18,835,452 - 18,835,96871,303,974 - 71,305,149
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039G06.bB6Ng01-039G06.g
ACCDH866673DH866674
length9501,161
definitionDH866673|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G06, 5' end.DH866674|Mus musculus domesticus DNA, BAC clone: B6Ng01-039G06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(71,303,974 - 71,305,149)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgtcaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagttttatcatac
agatctttcacctccttagttagagtcacgccaagatattttatattatt

gaattctgctttagttcttgtcagcttttaagctttgtaggagaatccct
tggtaatagcataaggtacgatctgtaattgtaagcatatacaaacattt
tagggggagtctcatttgaaaacgtacccacaaaaaatggctttcctctc
tttaaataaagtgttcatttttctaagtggtcttttaaaggtgaaaataa
aatctatgtggaatttaaatattttcatctcttctaggcctatgctctcc
atgaggaacatttccattcactggcatgttttgttccatttggtgcttta
agggtttgaacgagggtcggatgcctaattcctcttcctcttatccacag
actgttcataaactccttaggagacttcacttgatggcctacaaggacag
atctacctccatgtgcagttacggcacaaaaaggaagctgtccactgccc
tggccttgatagggaaaccgtccatcctcctgctggtaagagaggcatta
tcaacaaagctgctagtgtgtaattagagcagcacatcagccatgtatat
tgttctcatcagcagcaccgtcaacatctagtgaggtcccactgtgtgcc
agttactgtcagagcacgtatactgccaccacattcggagaatttgtatt
agcaaataatttatgatcatgacagtgtcctcgggaagcactttgtgtct
gaagcaatggctcgggaggcttcagagaaaacactcagcatgtgaattcg
aaatagcagcaaccagctcaggggtttcaaataagtcagagagcaggctc
aaatttaattcccacttattgatgaaatcatatttctgttaggtactgat
caagtgaactagcagtttccaatttttgctgaggaagaaaggcacatttt
agaacaaagtgttgtactaaaattatatttctttgtagcttaaaatatga
gttatgcagcttgtgctgtgatgaaaaatacactgtgtcgttttttatga
acttgggagagatcaagaaatgcactccatgtttatatttttgtttagag
ctgcagatttaattgctcacctgccaaaacaaatgaccactactatgatg
gagtgtctactcccgggcccacaagacagcttattcaagaagacacatgt
cttattttgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-039G06.b_44_561 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCGTGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr1_71303974_71305149
seq2: B6Ng01-039G06.g_66_1226 (reverse)

seq1  TCCAAAATAAGACATGTGTATTTCTCTGAAATAAAGGCCCTGGTGCTTTG  50
      ||||||||||||||||||| |   |||  |||||       | ||  |||
seq2  TCCAAAATAAGACATGTGTCT---TCTTGAATAA-------GCTGTCTTG  40

seq1  TTGGGCCCGGGGAGTAGAACACTCCATCACTAGTATGTGTCATTTGTATT  100
       ||||||| |||||||| ||||||||||| |||||   ||||||||| ||
seq2  -TGGGCCC-GGGAGTAG-ACACTCCATCA-TAGTAGTGGTCATTTGTTTT  86

seq1  TGCAGGTGAGCAATTAAATCTGCAGCTCTAAAC-AAAATATAAACATGGA  149
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGCAGGTGAGCAATTAAATCTGCAGCTCTAAACAAAAATATAAACATGGA  136

seq1  GTGCATTTCTTGATCCTCTCCCAAGTTCATATAAAACGACACAGTGTATT  199
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  GTGCATTTCTTGAT-CTCTCCCAAGTTCATAAAAAACGACACAGTGTATT  185

seq1  TTTCATCACAGCACAAGCTGCATAACTCATATTTTTAAGCTACAAAGAAA  249
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTCATCACAGCACAAGCTGCATAACTCATA-TTTTAAGCTACAAAGAAA  234

seq1  TATAATTTTAGTACAACACTTTGTTCTAAAATGTGCCTTTCTTCCTCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTTAGTACAACACTTTGTTCTAAAATGTGCCTTTCTTCCTCAGC  284

seq1  AAAAATTGGAAACTGCTAGTTCACTTGATCAGTACCTAACAGAAATATGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGAAACTGCTAGTTCACTTGATCAGTACCTAACAGAAATATGA  334

seq1  TTTCATCAATAAGTGGGAATTAAATTTGAGCCTGCTCTCTGACTTATTTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATCAATAAGTGGGAATTAAATTTGAGCCTGCTCTCTGACTTATTTG  384

seq1  AAACCCCTGAGCTGGTTGCTGCTATTTCGAATTCACATGCTGAGTGTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCTGAGCTGGTTGCTGCTATTTCGAATTCACATGCTGAGTGTTTT  434

seq1  CTCTGAAGCCTCCCGAGCCATTGCTTCAGACACAAAGTGCTTCCCGAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAGCCTCCCGAGCCATTGCTTCAGACACAAAGTGCTTCCCGAGGA  484

seq1  CACTGTCATGATCATAAATTATTTGCTAATACAAATTCTCCGAATGTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCATGATCATAAATTATTTGCTAATACAAATTCTCCGAATGTGGT  534

seq1  GGCAGTATACGTGCTCTGACAGTAACTGGCACACAGTGGGACCTCACTAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATACGTGCTCTGACAGTAACTGGCACACAGTGGGACCTCACTAG  584

seq1  ATGTTGACGGTGCTGCTGATGAGAACAATATACATGGCTGATGTGCTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACGGTGCTGCTGATGAGAACAATATACATGGCTGATGTGCTGCT  634

seq1  CTAATTACACACTAGCAGCTTTGTTGATAATGCCTCTCTTACCAGCAGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTACACACTAGCAGCTTTGTTGATAATGCCTCTCTTACCAGCAGGA  684

seq1  GGATGGACGGTTTCCCTATCAAGGCCAGGGCAGTGGACAGCTTCCTTTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGACGGTTTCCCTATCAAGGCCAGGGCAGTGGACAGCTTCCTTTTT  734

seq1  GTGCCGTAACTGCACATGGAGGTAGATCTGTCCTTGTAGGCCATCAAGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCGTAACTGCACATGGAGGTAGATCTGTCCTTGTAGGCCATCAAGTG  784

seq1  AAGTCTCCTAAGGAGTTTATGAACAGTCTGTGGATAAGAGGAAGAGGAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCCTAAGGAGTTTATGAACAGTCTGTGGATAAGAGGAAGAGGAAT  834

seq1  TAGGCATCCGACCCTCGTTCAAACCCTTAAAGCACCAAATGGAACAAAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATCCGACCCTCGTTCAAACCCTTAAAGCACCAAATGGAACAAAAC  884

seq1  ATGCCAGTGAATGGAAATGTTCCTCATGGAGAGCATAGGCCTAGAAGAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTGAATGGAAATGTTCCTCATGGAGAGCATAGGCCTAGAAGAGA  934

seq1  TGAAAATATTTAAATTCCACATAGATTTTATTTTCACCTTTAAAAGACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATATTTAAATTCCACATAGATTTTATTTTCACCTTTAAAAGACCA  984

seq1  CTTAGAAAAATGAACACTTTATTTAAAGAGAGGAAAGCCATTTTTTGTGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAAAAATGAACACTTTATTTAAAGAGAGGAAAGCCATTTTTTGTGG  1034

seq1  GTACGTTTTCAAATGAGACTCCCCCTAAAATGTTTGTATATGCTTACAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGTTTTCAAATGAGACTCCCCCTAAAATGTTTGTATATGCTTACAAT  1084

seq1  TACAGATCGTACCTTATGCTATTACCAAGGGATTCTCCTACAAAGCTTAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATCGTACCTTATGCTATTACCAAGGGATTCTCCTACAAAGCTTAA  1134

seq1  AAGCTGACAAGAACTAAAGCAGAATTC  1176
      |||||||||||||||||||||||||||
seq2  AAGCTGACAAGAACTAAAGCAGAATTC  1161