BAC Information

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BAC

Clone NameB6Ng01-039I08
Chromosome6 (Build37)
Map Location 144,429,228 - 144,598,650
singlet/doubletdoublet
Overlap genenone
Upstream geneSox5
Downstream gene4933425H06Rik, EG665149, Bcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039I08.bB6Ng01-039I08.g
ACCDH866772DH866773
length1,122326
definitionDH866772|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I08, 5' end.DH866773|Mus musculus domesticus DNA, BAC clone: B6Ng01-039I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,597,520 - 144,598,650)(144,429,228 - 144,429,553)
sequence
gaattcagtcagtgatttttcaactggtggtaaaggggagtccctgcatt
ggtgtggcttcttcgggggtcccgcaaagggaagtgattttgtggtggtc
acattttagtattgtagtttctatgttccctttccccactattaatgttg
tacactcattttgagcctaaaaatgttttaaaacatgttccataatctta
aaaagtaaaaaaaaaaaattataattattcttggaaacaaatgccgacca
catgttacatcatgaataattctcccaggcttccctcctctttccaaaca
aagggtctagcctcctcttagtcctttttttttttttctttctgtttctt
agtttttaggacagggtcttatactgtagcccaggctaatccagaattca
ctatttagccaacgttgacctcaaaatccaccatcctcctgcctcagctt
cctaatgactgaaatcacaggtccctttgactcattataaacttccatcc
tctggcttgctccccgccagccacactggctggcttgatttccgtccaaa
tgataggatggctcctatgttagagccctcgaatttactcctccacgcct
gctaataagttacctgtttcctgatcccccacagtctgatgtgcttagga
ctcccatcctaaagtttaaaaatcaggttttctccctaataggaaccacc
ctgaacacgtcacatattaattcttatcgattctgctcccagatgtttat
agatgccaggaagggttttgatttgtttgttgttggctatgaaatagagt
ctcactgtggagtcccagctgatccggaactagggcggatctggctggcc
tagatctgcctacctccattgctgcctgagcgcagagcgcttagagaaag
gcatatgccatcatgacaagttaacagagctcttcataccccatccactc
caaagcatctagctagtatctattggaatgcccaagctcaaatggatgcg
tgctctccggaaactgaccaccggtggccagagcatgcctgtttgaagtc
agaactgcattatgtatggagctggggataagcatctcttgtgtgcatcc
agacagctcaagatttgctggg
ttctttttttttctttctttcctttcatgacttgaccataaagataaaac
tggggtgctttaattaccatccagagccagagccttgccctttgatatgg
aaatcccacttgtgcccccacctcttctctgccccttcctccactttccc
agcaggaattttaagtagctttgtccaaccagcttatagtgacaacaaga
gagccaagcatagctcctggtaaggtctgagtcctcctggcagaactgag
ggcaggacagaatggagaggagataaacaggaaggacaggacaggataga
atagggtagggtagggtagggtaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144597520_144598650
seq2: B6Ng01-039I08.b_46_1167 (reverse)

seq1  CCCAGCAAAATCTCTGAGCTG-CTGAGATGCACACAAGAGATGGCTTAAT  49
      |||||| |||||| ||||||| ||| |||||||||||||||| |||| ||
seq2  CCCAGC-AAATCT-TGAGCTGTCTG-GATGCACACAAGAGAT-GCTT-AT  45

seq1  CCCCAGCTCCATACATAATGCAGTTCTGACTCTCAAACAGGCATGGCTCT  99
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  CCCCAGCTCCATACATAATGCAGTTCTGACT-TCAAACAGGCAT-GCTCT  93

seq1  GGCCACCCGCTGGGTCAGTTTCCGGGAGAGCACGCATCCATTTGAGCTTG  149
      ||||||| |   ||||||||||| ||||||||||||||||||||||||||
seq2  GGCCACCGG--TGGTCAGTTTCC-GGAGAGCACGCATCCATTTGAGCTTG  140

seq1  GGCATTCCAATAGATACTAGCTAGATGCTTTGGAGTGGATGGGGTATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCAATAGATACTAGCTAGATGCTTTGGAGTGGATGGGGTATGAA  190

seq1  GAGCTCTGTTAACTTGTCATGATGGCATATGCCTTTCTCTAAGCGCTCTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTGTTAACTTGTCATGATGGCATATGCCTTTCTCTAAGCGCTCTG  240

seq1  CGCTCAGGCAGCAATGGAGGTAGGCAGATCTAGGCCAGCCAGATCCGCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCAGGCAGCAATGGAGGTAGGCAGATCTAGGCCAGCCAGATCCGCCC  290

seq1  TAGTTCCGGATCAGCTGGGACTCCACAGTGAGACTCTATTTCATAGCCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCGGATCAGCTGGGACTCCACAGTGAGACTCTATTTCATAGCCAA  340

seq1  CAACAAACAAATCAAAACCCTTCCTGGCATCTATAAACATCTGGGAGCAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACAAATCAAAACCCTTCCTGGCATCTATAAACATCTGGGAGCAG  390

seq1  AATCGATAAGAATTAATATGTGACGTGTTCAGGGTGGTTCCTATTAGGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGATAAGAATTAATATGTGACGTGTTCAGGGTGGTTCCTATTAGGGA  440

seq1  GAAAACCTGATTTTTAAACTTTAGGATGGGAGTCCTAAGCACATCAGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTGATTTTTAAACTTTAGGATGGGAGTCCTAAGCACATCAGACT  490

seq1  GTGGGGGATCAGGAAACAGGTAACTTATTAGCAGGCGTGGAGGAGTAAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGATCAGGAAACAGGTAACTTATTAGCAGGCGTGGAGGAGTAAAT  540

seq1  TCGAGGGCTCTAACATAGGAGCCATCCTATCATTTGGACGGAAATCAAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGGGCTCTAACATAGGAGCCATCCTATCATTTGGACGGAAATCAAGC  590

seq1  CAGCCAGTGTGGCTGGCGGGGAGCAAGCCAGAGGATGGAAGTTTATAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGTGGCTGGCGGGGAGCAAGCCAGAGGATGGAAGTTTATAATG  640

seq1  AGTCAAAGGGACCTGTGATTTCAGTCATTAGGAAGCTGAGGCAGGAGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAAGGGACCTGTGATTTCAGTCATTAGGAAGCTGAGGCAGGAGGAT  690

seq1  GGTGGATTTTGAGGTCAACGTTGGCTAAATAGTGAATTCTGGATTAGCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATTTTGAGGTCAACGTTGGCTAAATAGTGAATTCTGGATTAGCCT  740

seq1  GGGCTACAGTATAAGACCCTGTCCTAAAAACTAAGAAACAGAAAGAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTACAGTATAAGACCCTGTCCTAAAAACTAAGAAACAGAAAGAAAAA  790

seq1  AAAAAAAAGGACTAAGAGGAGGCTAGACCCTTTGTTTGGAAAGAGGAGGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGACTAAGAGGAGGCTAGACCCTTTGTTTGGAAAGAGGAGGG  840

seq1  AAGCCTGGGAGAATTATTCATGATGTAACATGTGGTCGGCATTTGTTTCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGGGAGAATTATTCATGATGTAACATGTGGTCGGCATTTGTTTCC  890

seq1  AAGAATAATTATAATTTTTTTTTTTTACTTTTTAAGATTATGGAACATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAATTATAATTTTTTTTTTTTACTTTTTAAGATTATGGAACATGT  940

seq1  TTTAAAACATTTTTAGGCTCAAAATGAGTGTACAACATTAATAGTGGGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATTTTTAGGCTCAAAATGAGTGTACAACATTAATAGTGGGGA  990

seq1  AAGGGAACATAGAAACTACAATACTAAAATGTGACCACCACAAAATCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACATAGAAACTACAATACTAAAATGTGACCACCACAAAATCACT  1040

seq1  TCCCTTTGCGGGACCCCCGAAGAAGCCACACCAATGCAGGGACTCCCCTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTGCGGGACCCCCGAAGAAGCCACACCAATGCAGGGACTCCCCTT  1090

seq1  TACCACCAGTTGAAAAATCACTGACTGAATTC  1131
      ||||||||||||||||||||||||||||||||
seq2  TACCACCAGTTGAAAAATCACTGACTGAATTC  1122

seq1: chr6_144429228_144429553
seq2: B6Ng01-039I08.g_72_397

seq1  TTCTTTTTTTTTCTTTCTTTCCTTTCATGACTTGACCATAAAGATAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTCTTTCTTTCCTTTCATGACTTGACCATAAAGATAAAAC  50

seq1  TGGGGTGCTTTAATTACCATCCAGAGCCAGAGCCTTGCCCTTTGATATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGCTTTAATTACCATCCAGAGCCAGAGCCTTGCCCTTTGATATGG  100

seq1  AAATCCCACTTGTGCCCCCACCTCTTCTCTGCCCCTTCCTCCACTTTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCACTTGTGCCCCCACCTCTTCTCTGCCCCTTCCTCCACTTTCCC  150

seq1  AGCAGGAATTTTAAGTAGCTTTGTCCAACCAGCTTATAGTGACAACAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAATTTTAAGTAGCTTTGTCCAACCAGCTTATAGTGACAACAAGA  200

seq1  GAGCCAAGCATAGCTCCTGGTAAGGTCTGAGTCCTCCTGGCAGAACTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAAGCATAGCTCCTGGTAAGGTCTGAGTCCTCCTGGCAGAACTGAG  250

seq1  GGCAGGACAGAATGGAGAGGAGATAAACAGGAAGGACAGGACAGGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGACAGAATGGAGAGGAGATAAACAGGAAGGACAGGACAGGATAGA  300

seq1  ATAGGGTAGGGTAGGGTAGGGTAGGG  326
      ||||||||||||||||||||||||||
seq2  ATAGGGTAGGGTAGGGTAGGGTAGGG  326