BAC Information

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BAC

Clone NameB6Ng01-040D20
Chromosome6 (Build37)
Map Location 32,074,816 - 32,208,229
singlet/doubletdoublet
Overlap genePlxna4
Upstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104, 1700012A03Rik
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040D20.bB6Ng01-040D20.g
ACCDH867270DH867271
length634907
definitionDH867270|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D20, 5' end.DH867271|Mus musculus domesticus DNA, BAC clone: B6Ng01-040D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,074,816 - 32,075,450)(32,207,325 - 32,208,229)
sequence
gaattctatgccatgatcaggactaaagagataggaatagatagatagga
atagatagatagatagatagatagatagatagatagatagatagatagat
agataagtggaggtagagatagagatagaagatgtagatgaggtagagat
agagatgacatagatatggatagatgttaatacctactcattttactgtc
tcaaatgtatgtcttgattttataaagcgtgtcagagagaaagtaaatga
tgaccatctactggttcatgtagacagactagaaggcctgtaggctgaag
tggggaaattggagggaagcataaactctatgacatccctctgagtgaca
cctagtccgttcccttatgttctgtgtagatctctgcatgctcgagagca
cctccaggtattacaagacccagtagatgattacgctcatatttgcttga
ggtcaagcaccgaccttttactgggttgtcagttgcctaacacccaagtt
aaggtcaaccggcttggctagtaatggacctaggtttggatggagactgg
ctggtagcctaggctaactcccaggagttccggccagggttatttagaga
gaatccatggtctggagcttatctacaaacctgt
gaattcaaccgtaggtgacagagggacttccagggactctgtgaattcct
ttcatgaccccaagtcagaagaaacaaacctagaaatgtagccagaggcc
acaaaggaacgaaatgcctaagaagagactgtgaaagttctccaagaccc
cggcactgagatgcatgtgcactgctgagctaactcgctcctagaaggaa
agactttcctcagccccacttccctcacatgggaacaggagacaggagga
cagcatgaaggatggctccaagtgccacatctgtgcagtctgacagctcc
ccaggagcttcttcgagtttcttaatgggtcttcttgcctctcttttcct
ttctttcttttcctttttttgtgtgtgtgtgacaattttgaaggaaattg
ggtacttaggaagccttttggacatttaaattaactccagccatcaggct
cagtgtagccactgtggcattagcatccaattataagagtagagatggag
taataactcacacttcgaccaggatgtcaaatgcttaaacaaatgagaga
tgcacacagagactgtgcacagtagagaaggagggcttctgcatcggagt
ctgcagagtagcaggcgccctttggaacgagagctgcagcagacaaagta
gagcccgactgccagtgaaaagcatcatacaaagggggaaactggcaggg
attgaccatcaccacgagccaaaaccttgtgaaaaccataccaattcctc
cagtgggacaacttctaagaatggagtaagcttggccaactcagaaactt
aggaaaaccaagggcaggtgttgagagctgggatgggtcctctgctttgt
tctgtcactcaatcagcttctagcctaggctactgtgtattaaatcggtg
ggctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32074816_32075450
seq2: B6Ng01-040D20.b_45_678

seq1  GAATTCTATGCCATGATCAGGACTAAAGAGATAGGAATAGATAGATAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGCCATGATCAGGACTAAAGAGATAGGAATAGATAGATAGGA  50

seq1  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGAT  100

seq1  AGATAAGTGGAGGTAGAGATAGAGATAGAAGATGTAGATGAGGTAGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTGGAGGTAGAGATAGAGATAGAAGATGTAGATGAGGTAGAGAT  150

seq1  AGAGATGACATAGATATGGATAGATGTTAATACCTACTCATTTTATTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGAGATGACATAGATATGGATAGATGTTAATACCTACTCATTTTACTGTC  200

seq1  TCAAATGTATGTCTTGATTTTATAAAGCGTGTCAGAGAGAAAGTAAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTATGTCTTGATTTTATAAAGCGTGTCAGAGAGAAAGTAAATGA  250

seq1  TGACAATCTACTGGTTCATGTAGACAGACTAGAAGGCCTGTAGGCTGAAG  300
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATCTACTGGTTCATGTAGACAGACTAGAAGGCCTGTAGGCTGAAG  300

seq1  TGGGGAAATTGGAGGGAAGCATAAACTCTATGAAATCCCTCTGAGTGACA  350
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGGAAATTGGAGGGAAGCATAAACTCTATGACATCCCTCTGAGTGACA  350

seq1  CCTAGTCTGCTCCATTATGTTCTGTGTAGATCCCTGGATGTTGGAGAGCA  400
      ||||||| | ||| |||||||||||||||||| ||| ||| | |||||||
seq2  CCTAGTCCGTTCCCTTATGTTCTGTGTAGATCTCTGCATGCTCGAGAGCA  400

seq1  CTTCCAGGTATGACAAGACCCAGTAGATGATTATGCACATATTTGCTTGA  450
      | ||||||||| ||||||||||||||||||||| || |||||||||||||
seq2  CCTCCAGGTATTACAAGACCCAGTAGATGATTACGCTCATATTTGCTTGA  450

seq1  GGTCAAGCACAGACCTTTTAGTGGGTTGTCAGTTGCCTAAGACCCAAGTT  500
      |||||||||| ||||||||| ||||||||||||||||||| |||||||||
seq2  GGTCAAGCACCGACCTTTTACTGGGTTGTCAGTTGCCTAACACCCAAGTT  500

seq1  AAGGTCAAAAGGCTTGGCTAGTAATGGACCTAGGTTTGGATGGAGACTGG  550
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAACCGGCTTGGCTAGTAATGGACCTAGGTTTGGATGGAGACTGG  550

seq1  CTGGTAGCCTAGGCTAACTCCCAGGAGTTCCAGGCCAGGGTTATTTAGAG  600
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGGTAGCCTAGGCTAACTCCCAGGAGTTCC-GGCCAGGGTTATTTAGAG  599

seq1  AGAATCCATGGTCTGGAGCTTATCTACAAACCTGT  635
      |||||||||||||||||||||||||||||||||||
seq2  AGAATCCATGGTCTGGAGCTTATCTACAAACCTGT  634

seq1: chr6_32207325_32208229
seq2: B6Ng01-040D20.g_70_975 (reverse)

seq1  AGAGCCCACCGATTTAATACAACAGTAGCCTAGGCTAGAAGCTGA-TGAG  49
      |||||||||||||||||||| |||||||||||||||||||||||| ||||
seq2  AGAGCCCACCGATTTAATAC-ACAGTAGCCTAGGCTAGAAGCTGATTGAG  49

seq1  TGACAGAACAAAGCAGAGGACCCATCCCAGCTCTCAACACCTGGCCCTTG  99
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGACAGAACAAAGCAGAGGACCCATCCCAGCTCTCAACACCT-GCCCTTG  98

seq1  GTTTTCCTAAGTTTCTGAGTTGGCCAAGCTTACTCCATTCTTAGAAGTTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCTAAGTTTCTGAGTTGGCCAAGCTTACTCCATTCTTAGAAGTTG  148

seq1  TCCCACTGGAGGAATTGGTATGG-TTTCACAAGG-TTTGGCTCGTGGTGA  197
      ||||||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TCCCACTGGAGGAATTGGTATGGTTTTCACAAGGTTTTGGCTCGTGGTGA  198

seq1  TGGTCAATCCCTGCCAGTTTCCCCCTTTGTATGATGCTTTTCACTGGCAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATCCCTGCCAGTTTCCCCCTTTGTATGATGCTTTTCACTGGCAG  248

seq1  TCGGGCTCTACTTTGTCTGCTGCAGCTCTCGTTCCAAAGGGCGCCTGCTA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGCTCTACTTTGTCTGCTGCAGCTCTCGTTCCAAAGGGCGCCTGCTA  298

seq1  CTCTGCAGACTCCGATGCAGAAGCCCTCCTTCTCTACTGTGCACAGTCTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGACTCCGATGCAGAAGCCCTCCTTCTCTACTGTGCACAGTCTC  348

seq1  TGTGTGCATCTCTCATTTGTTTAAGCATTTGACATCCTGGTCGAAGTGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATCTCTCATTTGTTTAAGCATTTGACATCCTGGTCGAAGTGTG  398

seq1  AGTTATTACTCCATCTCTACTCTTATAATTGGATGCTAATGCCACAGTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTACTCCATCTCTACTCTTATAATTGGATGCTAATGCCACAGTGG  448

seq1  CTACACTGAGCCTGATGGCTGGAGTTAATTTAAATGTCCAAAAGGCTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACTGAGCCTGATGGCTGGAGTTAATTTAAATGTCCAAAAGGCTTCC  498

seq1  TAAGTACCCAATTTCCTTCAAAATTGTCACACACACACAAAAAAAGGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCCAATTTCCTTCAAAATTGTCACACACACACAAAAAAAGGAAA  548

seq1  AGAAAGAAAGGAAAAGAGAGGCAAGAAGACCCATTAAGAAACTCGAAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGGAAAAGAGAGGCAAGAAGACCCATTAAGAAACTCGAAGAA  598

seq1  GCTCCTGGGGAGCTGTCAGACTGCACAGATGTGGCACTTGGAGCCATCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGGGAGCTGTCAGACTGCACAGATGTGGCACTTGGAGCCATCCT  648

seq1  TCATGCTGTCCTCCTGTCTCCTGTTCCCATGTGAGGGAAGTGGGGCTGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTGTCCTCCTGTCTCCTGTTCCCATGTGAGGGAAGTGGGGCTGAG  698

seq1  GAAAGTCTTTCCTTCTAGGAGCGAGTTAGCTCAGCAGTGCACATGCATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTTTCCTTCTAGGAGCGAGTTAGCTCAGCAGTGCACATGCATCT  748

seq1  CAGTGCCGGGGTCTTGGAGAACTTTCACAGTCTCTTCTTAGGCATTTCGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCGGGGTCTTGGAGAACTTTCACAGTCTCTTCTTAGGCATTTCGT  798

seq1  TCCTTTGTGGCCTCTGGCTACATTTCTAGGTTTGTTTCTTCTGACTTGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTGGCCTCTGGCTACATTTCTAGGTTTGTTTCTTCTGACTTGGG  848

seq1  GTCATGAAAGGAATTCACAGAGTCCCTGGAAGTCCCTCTGTCACCTACGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGAAAGGAATTCACAGAGTCCCTGGAAGTCCCTCTGTCACCTACGG  898

seq1  TTGAATTC  905
      ||||||||
seq2  TTGAATTC  906