BAC Information

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BAC

Clone NameB6Ng01-040H12
Chromosome6 (Build37)
Map Location 108,277,435 - 108,278,607
singlet/doubletsinglet
Overlap geneItpr1
Upstream geneLrrn1, Setmar, Sumf1, LOC100043718
Downstream geneLOC677205, Bhlhb2, Arl8b, Edem1, EG627371, LOC639110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040H12.bB6Ng01-040H12.g
ACCDH867426DH867427
length1,1641,163
definitionDH867426|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H12, 5' end.DH867427|Mus musculus domesticus DNA, BAC clone: B6Ng01-040H12, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
gtggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatccccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
ttggagagctagagaagtagccaggagctaaagggatctgcacctatagg
tggaacacatatgagctaccagtaccggagctcttgactctagctgcatt
tataacaaagatggctagtctgcattcactggaaaagaggccatgactgc
aacttatattgcccagacagggattacagggtcaatagggggatggtggc
aagggtcatatggg
gaattctttgggtttggttaaaaagtgtaagcttgaaaataaatttcaaa
ggtggtttttaagactttctattgaacaaagagtaaaacctggagactgg
agaacggtcggacgtgcagcgccgaccttcagcagtgacgagccagcacc
ttgcttcatggacttgattaacgtgatgtcatttccagacattgtgttat
ttggtttgagaggacattttcaagttgcttccaattccagctgttggggt
agaatcggcaacccaggaaagccgtcctgtgctctgttgcaggccccctg
ggccaaaagggatcaggcctgaaaaactgcattgcctgagtgagtctgtg
ttggtgacacagaagactgaagccataggggaagttggtgatgtcatctc
tctcgctttcccctccccttcccactcccaaccctgaaccctgaccaaac
aaagcatatttttctagtgatagaaatcagacacttttgacctttttctt
gaagggaaattttgtttttcttcttccttttccttatcagcaagatcttc
cttttcatggaaccataaaaagaaattcattgtttgaggtctttttaaat
acatgtatgtatatatacgtccatctatgtacacatatatatgtacagac
gttaaatgtatcactgattaaattttacctactcatttcattcccatgct
tgaatataccgaaaattactctttccctaaaacgcatctgatctctccaa
gcaccagcatcccactccccaacagaggtgaccactgttttgatattgtc
aggaatttcatataaatggggccactctgtgtcaacagactcattttgta
tcactgccttgtgacctttcactcaaagtaaaataatatttgtgaaacct
gtccctgctgttttcgtgtgacactggcttgctttttagggcagcatggc
tccccgcatctcggtgttgcgtgactgtgccgtttgcctgcccactgttt
cacagcaatggaatttattgactcatcactgtgttaggatggttcagagg
cctcaagtgaagtagctgatttccttttgaagttactgtggttctagctc
ttggtgctatttcctggtggataaaaaacttataagtgaattctttcccc
ccaattattcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_108277435_108278607
seq2: B6Ng01-040H12.g_70_1232

seq1  GAATTCTTTGGGTTTGGTTAAAAAGTGTAAGCTTGAAAATAAATTTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGTTTGGTTAAAAAGTGTAAGCTTGAAAATAAATTTCAAA  50

seq1  GGTGGTTTTTAAGACTTTCTATTGAACAAAGAGTAAAACCTGGAGACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTTTAAGACTTTCTATTGAACAAAGAGTAAAACCTGGAGACTGG  100

seq1  AGAACGGTCGGACGTGCAGCGCCGACCTTCAGCAGTGACGAGCCAGCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGGTCGGACGTGCAGCGCCGACCTTCAGCAGTGACGAGCCAGCACC  150

seq1  TTGCTTCATGGACTTGATTAACGTGATGTCATTTCCAGACATTGTGTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCATGGACTTGATTAACGTGATGTCATTTCCAGACATTGTGTTAT  200

seq1  TTGGTTTGAGAGGACATTTTCAAGTTGCTTCCAATTCCAGCTGTTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTGAGAGGACATTTTCAAGTTGCTTCCAATTCCAGCTGTTGGGGT  250

seq1  AGAATCGGCAACCCAGGAAAGCCGTCCTGTGCTCTGTTGCAGGCCCCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGGCAACCCAGGAAAGCCGTCCTGTGCTCTGTTGCAGGCCCCCTG  300

seq1  GGCCAAAAGGGATCAGGCCTGAAAAACTGCATTGCCTGAGTGAGTCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAAAGGGATCAGGCCTGAAAAACTGCATTGCCTGAGTGAGTCTGTG  350

seq1  TTGGTGACACAGAAGACTGAAGCCATAGGGGAAGTTGGTGATGTCATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACACAGAAGACTGAAGCCATAGGGGAAGTTGGTGATGTCATCTC  400

seq1  TCTCGCTTTCCCCTCCCCTTCCCACTCCCAACCCTGAACCCTGACCAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCTTTCCCCTCCCCTTCCCACTCCCAACCCTGAACCCTGACCAAAC  450

seq1  AAAGCATATTTTTCTAGTGATAGAAATCAGACACTTTTGACCTTTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATATTTTTCTAGTGATAGAAATCAGACACTTTTGACCTTTTTCTT  500

seq1  GAAGGGAAATTTTGTTTTTCTTCTTCCTTTTCCTTATCAGCAAGATCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAATTTTGTTTTTCTTCTTCCTTTTCCTTATCAGCAAGATCTTC  550

seq1  CTTTTCATGGAACCATAAAAAGAAATTCATTGTTTGAGGTCTTTTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCATGGAACCATAAAAAGAAATTCATTGTTTGAGGTCTTTTTAAAT  600

seq1  ACATGTATGTATATATACGTCCATCTATGTACACATATATATGTACAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTATATATACGTCCATCTATGTACACATATATATGTACAGAC  650

seq1  GTTAAATGTATCACTGATTAAATTTTACCTACTCATTTCATTCCCATGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATGTATCACTGATTAAATTTTACCTACTCATTTCATTCCCATGCT  700

seq1  TGAATATACCGAAAATTACTCTTTCCCTAAAACGCATCTGATCTCTCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATACCGAAAATTACTCTTTCCCTAAAACGCATCTGATCTCTCCAA  750

seq1  GCACCAGCATCCCACTCCCCAACAGAGGTGACCACTGTTTTGATATTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCATCCCACTCCCCAACAGAGGTGACCACTGTTTTGATATTGTC  800

seq1  AGGAATTTCATATAAATGGGGCCACTCTGTGTCAACAGACTCATTTTGTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGGAATTTCATATAAATGGGGCCACTCTGTGTCAACAGACTCATTTTG-T  849

seq1  ATCACTGCCTTGTGACCTTTCACTCAAAGTAAAATAATATTTGTGAAACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGCCTTGTGACCTTTCACTCAAAGTAAAATAATATTTGTGAAACC  899

seq1  TGTCCCTGCTGTTTTCGTGTGACACTGGCTTGCTTTTTAGGGCAGCATGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTGCTGTTTTCGTGTGACACTGGCTTGCTTTTTAGGGCAGCATGG  949

seq1  CCTCCCCGCATCTCGGTGTTGCGTGACTGTGCCGTTTGCCTGCCCACTGT  1000
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTCCCCGCATCTCGGTGTTGCGTGACTGTGCCGTTTGCCTGCCCACTGT  998

seq1  TTCACAGCAATGGTATTTAATTGACTCATCACTGTGTTAGGATGTGTTCA  1050
      ||||||||||||| |||| ||||||||||||||||||||||||| |||||
seq2  TTCACAGCAATGGAATTT-ATTGACTCATCACTGTGTTAGGATG-GTTCA  1046

seq1  GAGGCCTTCAAGTGAAGTAGCTGATTTCATTTTGAAAGTTAACTTGTGAT  1100
      |||||| ||||||||||||||||||||| ||||| ||||| |||   | |
seq2  GAGGCC-TCAAGTGAAGTAGCTGATTTCCTTTTG-AAGTT-ACTGTGGTT  1093

seq1  CTAGCTCTTGTGGCTATTCCCTGTGGAGATAAGAAACTTAAATATGTAGA  1150
      ||||||||||  |||||| |||| |  ||||| ||||||  ||| ||  |
seq2  CTAGCTCTTGGTGCTATTTCCTG-GTGGATAAAAAACTT--ATAAGTGAA  1140

seq1  TAATTTCCCCCAAATTATTCAAA  1173
      |  |||||||| |||||||||||
seq2  TTCTTTCCCCCCAATTATTCAAA  1163