BAC Information

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BAC

Clone NameB6Ng01-040P06
Chromosome6 (Build37)
Map Location 9,348,001 - 9,477,886
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100036521, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
Downstream geneLOC330264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040P06.bB6Ng01-040P06.g
ACCDH867763DH867764
length1,126739
definitionDH867763|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P06, 5' end.DH867764|Mus musculus domesticus DNA, BAC clone: B6Ng01-040P06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,348,001 - 9,349,122)(9,477,148 - 9,477,886)
sequence
gaattcaccccctttcttcttaagtcaatgacctagccctgagaacacaa
tttcatggactgtttcttaggcaatattttcagagatgtcatgaggaact
aggaaatgggcatcttgtgtgccaggacgtcattcctaataacacagtgt
ctgaggaaatgaggctgggagagatggctggtatggtggtgaaggacagg
ctggcccatctgtgaataatagtgactcaggggatgatgaccttcagtca
gaactgatctcccctcctcctcatctcaggatatgtgcaagggtaggtcg
gtcaggaacagttttgggagtgataagaagtttccgtttgtcttttagat
agtagtaaaaatcctctagcttgtttcagtccagaaagtagcagcctgtg
catacagacagatttttctcccctttgcaaactgtcagttacaattcctt
cttttgccagagttgcactaattttgtaattcaacctaaaatgcttctta
ggggcatggcaagctaatgctggtaaaagacaaggctcctctccaggtag
ggatttcatgacataatatatgattgatagtgccaaagtcaggggataat
tctcaacccattgaaacatagatgatttagtgagttcatttagcttttcc
tctggcaaaaatgtaaaaacggcaatggccatactcctttgaatcatgta
ggatcacataacgctttatacagaaacaggaccacataagagaatccaac
tttaataaaagatcccacaatggggctgtggggcagcttcagttgctcca
acatcatatcttttatgaggtataaaaatacctaaattttcagggcttca
gaagtggacccaaagaagcatatgggcacaagtatttctctaattctgac
tggaaagtactgctatacacagctgtttgccaagatatatgtgatcataa
aatgatatttttttgctttttactttggacgttttattaaccacattgta
gaaaaagagttatcatcctataatttctactgggactaatgactccctct
cccaaatcactaaccttctcaaggttgtttggcttttaaactccacaata
tggaggaacttgagagaaatttgcaa

gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatataattcctgtttgttttctaatgagagagggcaagaaataatatg
gattcggtagttggcaaggtggagagaccctgggagggggtgggtgagcg
gaaactgtaatcataaaatattgtgttaaaaaaaactattttcaatttta
aaagaaaaatgcattgcctcctttgtgttatccatgactaagcaatgttt
tattttttccctctctttgtgttcatccttctctcttctatgggactggg
aaaggcaaagccacatccccatatatgtggagaaaagagctttgaagtat
tcataaactgcaataggaatttacaactgtaactttcacttagaaagatt
ctaaaagcttatatcgatcacacagagactacaacaagtttatgtatctg
tgaattcaatgcaatacgatgaaaagtcaatatcatttaaccttctcaaa
catctagtatgtagaatttgatcagatatgctaaagaaaataagaaggaa
gaaatataggttttggtcttgccaaagcaagtcacatcatggccttcatg
aagagtataaagttttggtttccttatttgaaaactatagttcatgttgc
tttttctgttcccctttgtaactgatgaagacatcatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_9348001_9349122
seq2: B6Ng01-040P06.b_47_1172

seq1  GAATTCACCCCCTTTCTTCTTAAGTCAATGACCTAGCCCTGAGAACACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCCTTTCTTCTTAAGTCAATGACCTAGCCCTGAGAACACAA  50

seq1  TTTCATGGACTGTTTCTTAGGCAATATTTTCAGAGATGTCATGAGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGACTGTTTCTTAGGCAATATTTTCAGAGATGTCATGAGGAACT  100

seq1  AGGAAATGGGCATCTTGTGTGCCAGGACGTCATTCCTAATAACACAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGGGCATCTTGTGTGCCAGGACGTCATTCCTAATAACACAGTGT  150

seq1  CTGAGGAAATGAGGCTGGGAGAGATGGCTGGTATGGTGGTGAAGGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAATGAGGCTGGGAGAGATGGCTGGTATGGTGGTGAAGGACAGG  200

seq1  CTGGCCCATCTGTGAATAATAGTGACTCAGGGGATGATGACCTTCAGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCATCTGTGAATAATAGTGACTCAGGGGATGATGACCTTCAGTCA  250

seq1  GAACTGATCTCCCCTCCTCCTCATCTCAGGATATGTGCAAGGGTAGGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATCTCCCCTCCTCCTCATCTCAGGATATGTGCAAGGGTAGGTCG  300

seq1  GTCAGGAACAGTTTTGGGAGTGATAAGAAGTTTCCGTTTGTCTTTTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAACAGTTTTGGGAGTGATAAGAAGTTTCCGTTTGTCTTTTAGAT  350

seq1  AGTAGTAAAAATCCTCTAGCTTGTTTCAGTCCAGAAAGTAGCAGCCTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTAAAAATCCTCTAGCTTGTTTCAGTCCAGAAAGTAGCAGCCTGTG  400

seq1  CATACAGACAGATTTTTCTCCCCTTTGCAAACTGTCAGTTACAATTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGACAGATTTTTCTCCCCTTTGCAAACTGTCAGTTACAATTCCTT  450

seq1  CTTTTGCCAGAGTTGCACTAATTTTGTAATTCAACCTAAAATGCTTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCCAGAGTTGCACTAATTTTGTAATTCAACCTAAAATGCTTCTTA  500

seq1  GGGGCATGGCAAGCTAATGCTGGTAAAAGACAAGGCTCCTCTCCAGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCATGGCAAGCTAATGCTGGTAAAAGACAAGGCTCCTCTCCAGGTAG  550

seq1  GGATTTCATGACATAATATATGATTGATAGTGCCAAAGTCAGGGGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTCATGACATAATATATGATTGATAGTGCCAAAGTCAGGGGATAAT  600

seq1  TCTCAACCCATTGAAACATAGATGATTTAGTGAGTTCATTTAGCTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACCCATTGAAACATAGATGATTTAGTGAGTTCATTTAGCTTTTCC  650

seq1  TCTGGCAAAAATGTAAAAACGGCAATGGCCATACTCCTTTGAATCATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAAAATGTAAAAACGGCAATGGCCATACTCCTTTGAATCATGTA  700

seq1  GGATCACATAACGCTTTATACAGAAACAGGACCACATAAGAGAATCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCACATAACGCTTTATACAGAAACAGGACCACATAAGAGAATCCAAC  750

seq1  TTTAATAAAAGATCCCACAAT-GGGCTGTGGGGCAGCTTCAGTTGCTCCA  799
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTTAATAAAAGATCCCACAATGGGGCTGTGGGGCAGCTTCAGTTGCTCCA  800

seq1  ACATCATATCTTTTATGAGGTATAAAAATACCTAA--TTTCAGGGCTTCA  847
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  ACATCATATCTTTTATGAGGTATAAAAATACCTAAATTTTCAGGGCTTCA  850

seq1  GAAGTGGACCCAAAGAAGCATAT-GGCACAAGTATTTCTCTAATTCTGAC  896
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAAGTGGACCCAAAGAAGCATATGGGCACAAGTATTTCTCTAATTCTGAC  900

seq1  TGGAAAAGTTACTGCTATACACAGCTGTTTGCCAAGATATATGTGATCAT  946
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAA--GTACTGCTATACACAGCTGTTTGCCAAGATATATGTGATCAT  948

seq1  AAAATGATAATATTTTTGCTTTTAACTTTGACAGTGTTATTAACCACATT  996
      |||||||| || ||||||||||| ||||||   || ||||||||||||||
seq2  AAAATGAT-ATTTTTTTGCTTTTTACTTTGGACGTTTTATTAACCACATT  997

seq1  GTTAGAAAAAGAG-TATCATCCTATAATTTCTACTTGGAACTAATGACTC  1045
      | ||||||||||| |||||||||||||||||||| ||| |||||||||||
seq2  G-TAGAAAAAGAGTTATCATCCTATAATTTCTAC-TGGGACTAATGACTC  1045

seq1  CTCTTCCCAAATCACCTACC-TCTCAGGGTTGTTT-GCTTTTAAACTCAA  1093
      |   |||||||||||  ||| ||||| |||||||| |||||||||||| |
seq2  CCTCTCCCAAATCACTAACCTTCTCAAGGTTGTTTGGCTTTTAAACTCCA  1095

seq1  CAATAT-GAGGAACTTGAGAG-AATTTGCAA  1122
      |||||| |||||||||||||| |||||||||
seq2  CAATATGGAGGAACTTGAGAGAAATTTGCAA  1126


seq1: chr6_9477148_9477886
seq2: B6Ng01-040P06.g_72_810 (reverse)

seq1  TCATGATGTCTTCATCAGTTACAAAGGGGAACAGAAAAGGCAACATGAAC  50
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCATGATGTCTTCATCAGTTACAAAGGGGAACAGAAAAAGCAACATGAAC  50

seq1  TATAGTTTTCAAATAAGGAAACCAAAACTTTATACTCTTCATGAAGGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTCAAATAAGGAAACCAAAACTTTATACTCTTCATGAAGGCCA  100

seq1  TGATGTGACTTGCTTTGGCAAGACCAAAACCTATATTTCTTCCTTCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTGACTTGCTTTGGCAAGACCAAAACCTATATTTCTTCCTTCTTAT  150

seq1  TTTCTTTAGCATATCTGATCAAATTCTACATACTAGATGTTTGAGAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAGCATATCTGATCAAATTCTACATACTAGATGTTTGAGAAGGT  200

seq1  TAAATGATATTGACTTTTCATCGTATTGCATTGAATTCACAGATACATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGATATTGACTTTTCATCGTATTGCATTGAATTCACAGATACATAA  250

seq1  ACTTGTTGTAGTCTCTGTGTGATCGATATAAGCTTTTAGAATCTTTCTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGTAGTCTCTGTGTGATCGATATAAGCTTTTAGAATCTTTCTAA  300

seq1  GTGAAAGTTACAGTTGTAAATTCCTATTGCAGTTTATGAATACTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTACAGTTGTAAATTCCTATTGCAGTTTATGAATACTTCAAAG  350

seq1  CTCTTTTCTCCACATATATGGGGATGTGGCTTTGCCTTTCCCAGTCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTCCACATATATGGGGATGTGGCTTTGCCTTTCCCAGTCCCAT  400

seq1  AGAAGAGAGAAGGATGAACACAAAGAGAGGGAAAAAATAAAACATTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAGAAGGATGAACACAAAGAGAGGGAAAAAATAAAACATTGCTT  450

seq1  AGTCATGGATAACACAAAGGAGGCAATGCATTTTTCTTTTAAAATTGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGGATAACACAAAGGAGGCAATGCATTTTTCTTTTAAAATTGAAA  500

seq1  ATAGTTTTTTTTAACACAATATTTTATGATTACAGTTTCCGCTCACCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTTTTTTTAACACAATATTTTATGATTACAGTTTCCGCTCACCCAC  550

seq1  CCCCTCCCAGGGTCTCTCCACCTTGCCAACTACCGAATCCATATTATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCAGGGTCTCTCCACCTTGCCAACTACCGAATCCATATTATTTC  600

seq1  TTGCCCTCTCTCATTAGAAAACAAACAGGAATTATATAGGGGACTAATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTCTCTCATTAGAAAACAAACAGGAATTATATAGGGGACTAATAT  650

seq1  CCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATATATAAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAAC  700

seq1  CCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  739
      |||||||||||||||||||||||||||||||||||||||
seq2  CCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  739


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