BAC Information

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BAC

Clone NameB6Ng01-041I07
Chromosome6 (Build37)
Map Location 21,681,466 - 21,786,390
singlet/doubletdoublet
Overlap geneTspan12
Upstream geneKcnd2, LOC100041343
Downstream geneLOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041I07.bB6Ng01-041I07.g
ACCDH868162DH868163
length972979
definitionDH868162|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I07, 5' end.DH868163|Mus musculus domesticus DNA, BAC clone: B6Ng01-041I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,681,466 - 21,682,442)(21,785,406 - 21,786,390)
sequence
gaattcttatcataaacaagacactgagttaagcatcaagagaaataagg
attgagaaatgagaccaacagaacttaacagtgttattggaggttctttg
tcacataatgttatatccaattttttaagcttttatttcattttagtttt
aatttttatttttttaattttacagtttttgcatatgtatcacggagtct
gcttttgtgattttatgggattcctaacaagtatgactctgcatctgcat
ctctttcttgtgcattttcttggactcttgtcctcctgtttatttgtttt
gtctgatgttgatatattttattttatcctttagatgcctgctcattttc
tagtcagagacatcaaagggatagatctggttgggagaggaagtgaggag
aaactaggaggaaaaccctaatcagaatatattgtatgaaaaaggaatat
attttcaataaaagaaacaaaaaatagtagatcaagtttcctcaagaact
tatacagtgccaatgaatgaaggcactctgtgtcctcctataactcaaaa
gcccacactgcaagttccctgtctgccaggatcacgcactgctatgtttc
catctcccaaagggagttccctgaaaagcattatataaatatattgttct
tcaaattattctctcaaatcatcccagcacactattgaaatctctatgta
aacaatgattctctttctaccaagggccagaagtaaacacatgtatccct
acctactcagagaagtcaaatccaaaagagaggcagaactcattactggg
gtttgatcatcgggaaaaggaaaatgcctgtctctcaagatctcccccac
atttcttatcacagtttcagagaatgtaaaaagaagtaatagatttattt
ttctttctccgagggtaatatgaatatcctcctcccacctcaaattggtt
gtgtaattactcttatggaaat
gaattctttcaatttctctctctggatccacgtgtctaaagatatttggt
ctgagctgttcattgggtggttcttctccaccatcctgtagaacagtttt
tcctgcactgtagaaacttactttctatatttatatttcccccccacatt
ctccttaaggaattccatcggttattcttgcagggcagtgggtaacagta
caaggacatggacatttatggacttagtaacacaccagttgtctggctta
tcctcatctctgatgcaatatataccactctgaatcatggccaggatcaa
gttagaagaaatgtttctgtaaagcccttaatacaacagaggttataagc
actgagtaatggctatgttttatcatcaccactatgccaggctctggtta
atgactctgtatgtcctagcaacaagtcctctcttttccttccttgtaat
tatgcctcacatccccaatacactactgttttcttcacactagaacatga
ttcgttagcagggagaggagaagtgctgtgcagaccaagctcagagaaga
gggcagttcctcccagttggtagctcgtggaattcacttaggctggggct
ttggagcctagatgtaaaacatgttgggttagaaatgctaccacttacta
aaaaatgtcacaaaactaaaacaaacataagtcacacaaacagacacaaa
gcacagcgattctgaaaaatagccataaaagccaccagcttttgaaggat
gccaatttggagagctggagctctcagtagcatttgctcagtgtctgggg
tctagggggtggtttgatcatttcgataacgtttgatttatctctgatat
gatcttcctctcttagggtagaagagcggtcatcttaactacttccccgt
ggttcaccccgtcatgattgctgtctgctgcttcctatcatccggggata
gctgggatacgtggacggggaaaagaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21681466_21682442
seq2: B6Ng01-041I07.b_47_1018

seq1  GAATTCTTATCATAAACAAGACACTGAGTTAAGCATCAAGAGAAATAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATAAACAAGACACTGAGTTAAGCATCAAGAGAAATAAGG  50

seq1  ATTGAGAAATGAGACCAACAGAACTTAACAGTGTTATTGGAGGTTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAATGAGACCAACAGAACTTAACAGTGTTATTGGAGGTTCTTTG  100

seq1  TCACATAATGTTATATCCAATTTTTTAAGCTTTTATTTCATTTTAGTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATAATGTTATATCCAATTTTTTAAGCTTTTATTTCATTTTAGTTTT  150

seq1  AATTTTTATTTTTTTAATTTTACAGTTTTTGCATATGTATCACGGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTATTTTTTTAATTTTACAGTTTTTGCATATGTATCACGGAGTCT  200

seq1  GCTTTTGTGATTTTATGGGATTCCTAACAAGTATGACTCTGCATCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGATTTTATGGGATTCCTAACAAGTATGACTCTGCATCTGCAT  250

seq1  CTCTTTCTTGTGCATTTTCTTGGACTCTTGTCCTCCTGTTTATTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTGTGCATTTTCTTGGACTCTTGTCCTCCTGTTTATTTGTTTT  300

seq1  GTCTGATGTTGATATATTTTATTTTATCCTTTAGATGCCTGCTCATTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGTTGATATATTTTATTTTATCCTTTAGATGCCTGCTCATTTTC  350

seq1  TAGTCAGAGACATCAAAGGGATAGATCTGGTTGGGAGAGGAAGTGAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAGACATCAAAGGGATAGATCTGGTTGGGAGAGGAAGTGAGGAG  400

seq1  AAACTAGGAGGAAAACCCTAATCAGAATATATTGTATGAAAAAGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGGAGGAAAACCCTAATCAGAATATATTGTATGAAAAAGGAATAT  450

seq1  ATTTTCAATAAAAGAAACAAAAAATAGTAGATCAAGTTTCCTCAAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAATAAAAGAAACAAAAAATAGTAGATCAAGTTTCCTCAAGAACT  500

seq1  TATACAGTGCCAATGAATGAAGGCACTCTGTGTCCTCCTATAACTCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTGCCAATGAATGAAGGCACTCTGTGTCCTCCTATAACTCAAAA  550

seq1  GCCCACACTGCAAGTTCCCTGTCTGCCAGGATCACGCACTGCTATGTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACACTGCAAGTTCCCTGTCTGCCAGGATCACGCACTGCTATGTTTC  600

seq1  CATCTCCCAAAGGGAGTTCCCTGAAAAGCATTATATAAATATATTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCAAAGGGAGTTCCCTGAAAAGCATTATATAAATATATTGTTCT  650

seq1  TCAAATTATTCTCTCAAATCATCCCAGCACACTATTGAAATCTCTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTATTCTCTCAAATCATCCCAGCACACTATTGAAATCTCTATGTA  700

seq1  AACAATGATTCTCTTTCTACCAAGGGCCAGAAGTAAACACATGTATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGATTCTCTTTCTACCAAGGGCCAGAAGTAAACACATGTATCCCT  750

seq1  ACCTACTCAGAGAAGTCAAATCCAAAAGAGAGGCAGAACTCATTACTGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTCAGAGAAGTCAAATCCAAAAGAGAGGCAGAACTCATTACTGGG  800

seq1  GTTTGATCATCGGGAAAAGGAAAATGCCTGTCTCTCAAGATTCTCCCCCA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTTGATCATCGGGAAAAGGAAAATGCCTGTCTCTCAAGA-TCTCCCCCA  849

seq1  CATTTCTTATCACAGTTTCAGAGAATGTAAAAAGAAGTTAATAGATTTAT  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CATTTCTTATCACAGTTTCAGAGAATGTAAAAAGAAG-TAATAGATTTAT  898

seq1  TTTTCTTTTCTCCGAGGGTAATTATGAATATCCACACCACACCTCAAATT  950
      ||||| ||||||||||||||| ||||||||||| |  | |||||||||||
seq2  TTTTC-TTTCTCCGAGGGTAA-TATGAATATCCTCCTCCCACCTCAAATT  946

seq1  AGTTTGTGTAATTACTCTTATGGAAAT  977
       | ||||||||||||||||||||||||
seq2  -GGTTGTGTAATTACTCTTATGGAAAT  972

seq1: chr6_21785406_21786390
seq2: B6Ng01-041I07.g_68_1046 (reverse)

seq1  ATTTCTTTTCACCGTTCCACAGTATCCCAGCATTCCCACGATGATAAGGA  50
      |||||||||| ||| ||||| ||||||||||  ||||  |||||| ||||
seq2  ATTTCTTTTCCCCG-TCCAC-GTATCCCAGCTATCCCCGGATGAT-AGGA  47

seq1  AGCAGCAGACAGCAATCATGACGGGGTGAACCACGGGGAAGTAAGTTAAG  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCAGCAGACAGCAATCATGACGGGGTGAACCACGGGGAAGT-AGTTAAG  96

seq1  ATGACCGCTTCTTCTACCCTAAGAGAGGAAGATCATATCAGAAGATAAAT  150
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  ATGACCGC-TCTTCTACCCTAAGAGAGGAAGATCATATCAG-AGATAAAT  144

seq1  CAAACGTTATCGAAATGATCAAACCACCCCCTAGACCCCAGACACTGAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGTTATCGAAATGATCAAACCACCCCCTAGACCCCAGACACTGAGC  194

seq1  AAATGCTACTGAGAGCTCCAGCTCTCCAAATTGGCATCCTTCAAAAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTACTGAGAGCTCCAGCTCTCCAAATTGGCATCCTTCAAAAGCTG  244

seq1  GTGGCTTTTATGGCTATTTTTCAGAATCGCTGTGCTTTGTGTCTGTTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTTTATGGCTATTTTTCAGAATCGCTGTGCTTTGTGTCTGTTTGT  294

seq1  GTGACTTATGTTTGTTTTAGTTTTGTGACATTTTTTAGTAAGTGGTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTATGTTTGTTTTAGTTTTGTGACATTTTTTAGTAAGTGGTAGCA  344

seq1  TTTCTAACCCAACATGTTTTACATCTAGGCTCCAAAGCCCCAGCCTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACCCAACATGTTTTACATCTAGGCTCCAAAGCCCCAGCCTAAGT  394

seq1  GAATTCCACGAGCTACCAACTGGGAGGAACTGCCCTCTTCTCTGAGCTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGAGCTACCAACTGGGAGGAACTGCCCTCTTCTCTGAGCTTG  444

seq1  GTCTGCACAGCACTTCTCCTCTCCCTGCTAACGAATCATGTTCTAGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACAGCACTTCTCCTCTCCCTGCTAACGAATCATGTTCTAGTGTG  494

seq1  AAGAAAACAGTAGTGTATTGGGGATGTGAGGCATAATTACAAGGAAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACAGTAGTGTATTGGGGATGTGAGGCATAATTACAAGGAAGGAA  544

seq1  AAGAGAGGACTTGTTGCTAGGACATACAGAGTCATTAACCAGAGCCTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGGACTTGTTGCTAGGACATACAGAGTCATTAACCAGAGCCTGGC  594

seq1  ATAGTGGTGATGATAAAACATAGCCATTACTCAGTGCTTATAACCTCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGTGATGATAAAACATAGCCATTACTCAGTGCTTATAACCTCTGT  644

seq1  TGTATTAAGGGCTTTACAGAAACATTTCTTCTAACTTGATCCTGGCCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTAAGGGCTTTACAGAAACATTTCTTCTAACTTGATCCTGGCCATG  694

seq1  ATTCAGAGTGGTATATATTGCATCAGAGATGAGGATAAGCCAGACAACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGAGTGGTATATATTGCATCAGAGATGAGGATAAGCCAGACAACTG  744

seq1  GTGTGTTACTAAGTCCATAAATGTCCATGTCCTTGTACTGTTACCCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTACTAAGTCCATAAATGTCCATGTCCTTGTACTGTTACCCACTG  794

seq1  CCCTGCAAGAATAACCGATGGAATTCCTTAAGGAGAATGTGGGGGGGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCAAGAATAACCGATGGAATTCCTTAAGGAGAATGTGGGGGGGAAA  844

seq1  TATAAATATAGAAAGTAAGTTTCTACAGTGCAGGAAAAACTGTTCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATAGAAAGTAAGTTTCTACAGTGCAGGAAAAACTGTTCTACAG  894

seq1  GATGGTGGAGAAGAACCACCCAATGAACAGCTCAGACCAAATATCTTTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGGAGAAGAACCACCCAATGAACAGCTCAGACCAAATATCTTTAG  944

seq1  ACACGTGGATCCAGAGAGAGAAATTGAAAGAATTC  985
      |||||||||||||||||||||||||||||||||||
seq2  ACACGTGGATCCAGAGAGAGAAATTGAAAGAATTC  979