BAC Information

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BAC

Clone NameB6Ng01-042I18
Chromosome6 (Build37)1 (Build37)
Map Location 125,341,609 - 125,344,51872,045,035 - 72,046,172
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1, Tapbpl, Cd27, 4930417O13Rik, Tuba3a, Ltbr, Scnn1a, Tnfrsf1a, Plekhg6
Downstream geneCd9, Vwf, Tmem16b, Ntf3, LOC100043565, LOC667427
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042I18.bB6Ng01-042I18.g
ACCDH868894DH868895
length9571,129
definitionDH868894|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I18, 5' end.DH868895|Mus musculus domesticus DNA, BAC clone: B6Ng01-042I18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(125,341,609 - 125,344,518)(72,045,035 - 72,046,172)
sequence
gaattctcagtattcaaggatacatggagaagctaagttactgaccatgg
acttatgatttttttctaacagccattagccttttccctgtgttgaggcc
ctgtggtggtttgaatgagatgtctgacgtattctcaggcatctgaatac
ttggtccccagttggtgaccctgtttggttatgtctggaaggtgtggccc
tgctggagggggtgtgctacagagggtgggctttgagctttctttctttt
ttctaagatttatttattattatatctaagcacactgtagctgtcttcag
atgcaccagaagagggcatcagatctcattacagatggttgtgagccacc
atgtggttgctgggatttgaactcatgaccttcggaagagcagccggtgc
tcttaaccactgaaccatctctctagcccggcggctttgagctttcaaaa
gtcatggaccatttccagtgatctccctctgtttcctgttggtaatttga
gatgagagccctcagatctgtttccagctccagtcaccacgcttagccta
ctctcacaggtccctacggggatggtgatagactctcacctctcttgaac
cttaagccccaaataaaatattccttctataaattgccttggtcatggtg
ttctatcataacaataggaaagtagctaatacaggcctgctggatatgac
aactggagccatcatgcgggagttggcttacactgctctcaggggactca
cggacgatctgctggagggtagagtaagcccaacacgtatcattagaggt
cacgtgtgcggggagaagctgggtcagtgagggagccctggggtgggtgt
ctgctctcctttccctaactcaggcaagttgcttatgctttctggtcctc
actggtaaatgttgaaccccagtgatagttacctcactgagctatcagac
tgatcaa
gaattcttccccatctgtcagggaccgtccatgtgatatttccttccttt
gcttttgctaatcgattaactagagatcgaaggtacttcccccaagaaat
aaaagtaacactgctacaagcaacccagagaagctgggcagaggttaggc
gcaggtgagcatcaccataggctggtcaccatgtcgcagttagcccagag
taaggtgtcaggatgctttattgtgcctaggacaagaaagaaaactggaa
aacaataatgtgagaaattgaattgaaatttttgtagacgtctgttgaac
acaaaaggaaactaattccttattacggtagtttctaaagtcctaactag
aaaaagactaatcctgtgccaaggatgcccaaaacccttcctgtcaaccc
acacctcaatctcgtgggccacactgaaacctggatgcaagtcaagacaa
cagaatggtcagtaagggatggtaatcactgcaggaaactaggacaatgt
agggcatgaaaaattgtaggggagacaaagacattttatttccatttaaa
ccattctagaagtcatgatctcattggataggaatagcttgttcttaggg
aaagagaagaaaataaagtagaaaagctctctttcccagcattcagtgat
tctaaaccagtcctaacatggaacccagtgaagactaaatacagcctcca
ataaaagctgaggattgcccaatcactagggatcaatattgttcccagat
acagacgtctagagactctccaagcatacattgtgcccttcttatttatc
ttgattaaaaatataagttaaagtagtaacaacaaatacatcaaacatgt
actatatatgtcacgctctgaattgttccaaccactgagtgccacaacta
ctagttcttgctttacatgtaagataaacgcagtttggagataatcggac
taaagtgcttagctaggacatggtaagacaaagtcccgtattagcttttg
atatattttcagaatggtctttcattgtcttggaccatcccttcaattgc
ctagcaggatgagaatttttatattgtctagatggaccccagatctctat
gggaacccccccatcagaaagtaacagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_125341609_125344518
seq2: B6Ng01-042I18.b_281_695 (reverse)

seq1  AACACCATGACCAAGGCAATGTACATTAAAAAAAAAGATATAATAATAAA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TAAGTCTTTTTTTTTTAAAAAAAAAGAAGAAGAAGAAGAAGAAGCGCCGG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCATGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACA  200
                                                        
seq2  --------------------------------------------------  0

seq1  GCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAACAACAAAAAAAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  AAAAAAAAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  AAAGAAAAGAAAAAAACAAAGGTAGCTGAGCAAGCCAGTCAGCAGCATGC  350
                                                        
seq2  --------------------------------------------------  0

seq1  TTCCCTGGTCTGCTTCAGTTCCTGTCTCCTGGTTCCGAGTTGAGTCGCTG  400
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGACTTTCCCTTCATGAAGGACTCTGAGTCTCAAGATAAAATAAACC  450
                                                        
seq2  --------------------------------------------------  0

seq1  CTCCCCTCCCCAGTTGCTTTGGCCATGGTGTTTGTATCACAGCAACAGAA  500
                                                        
seq2  --------------------------------------------------  0

seq1  AGACAACTGGGGCATTTCTGCACCTCCGTATCTTCAAAGTGATTGTGTTG  550
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTTGTACAGTTACAGGAGAGCTAGATGAGTTAAGATCATGACACTCTT  600
                                                        
seq2  --------------------------------------------------  0

seq1  AGAAAGCAACCCCATTGCACTGGCTGGTTTTGTGTGTCAACTTGACACAA  650
                                                        
seq2  --------------------------------------------------  0

seq1  GCTGGACTTATCACAGAGGAATAAGCCTCCCTTGAGGAAATGCCTCCACG  700
                                                        
seq2  --------------------------------------------------  0

seq1  AGATCCAGCTGTGGGGCATTTTCTCAATTAGTGATCAAGTGGGGAGGTCC  750
                                                        
seq2  --------------------------------------------------  0

seq1  CCTTGTGGGTGGTGCCATCCCTGGGCTGGTAGTCTTGGTTCTATAAGAAA  800
                                                        
seq2  --------------------------------------------------  0

seq1  GCAAGCTGAGCAAACCAGGGGAAGCAAGCCAGTAAAGAACATCCCTCCAT  850
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCTCTGCATCAGCTCCTGCTTCCTGACTTGCTTGAGTTCCAGTCCTGA  900
                                                        
seq2  --------------------------------------------------  0

seq1  CTTCCTTGGTGATGAACAGCAATGCGGAAGTGCAAGCTGAATAAATCCTT  950
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTCCCCAATTTGCTTCTTGGTCATGATGTTTGTGCAAGAGTAGAAACC  1000
                                                        
seq2  --------------------------------------------------  0

seq1  CTGACTAAGACATTCATGCATTTGCAACTCAGCTGATGATCTTGGCTTCA  1050
                                                        
seq2  --------------------------------------------------  0

seq1  GTAGGATACATCAGTGAACAACTATTACTGACAAACGTCAAGAGAGAGAG  1100
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACAAAGTAAGC  1150
                                                        
seq2  --------------------------------------------------  0

seq1  ATGAAACCCCTCACTTCCTCCTTCCTGAAGCCATGAACTTCAGGAATGCT  1200
                                                        
seq2  --------------------------------------------------  0

seq1  ATGCACAGAGCAGAGTCTGACAGGGATGAGAAGTGAGAAATGCTGGCCTG  1250
                                                        
seq2  --------------------------------------------------  0

seq1  GTGCTTTCTTTACCACTAGGCCATTGCTTTAGGCAGGGCTGGGCAGTGCT  1300
                                                        
seq2  --------------------------------------------------  0

seq1  TTGTAATGGATTAGCGTGGCCAGGTTTCCTTTTTAAGAATCATGAGTGTA  1350
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTGGGCAGTGGTGGCGCATACCTTTAATCCCAGCACTTGGGAGGTAGA  1400
                                                        
seq2  --------------------------------------------------  0

seq1  GGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  1450
                                                        
seq2  --------------------------------------------------  0

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAAAAA  1500
                                                        
seq2  --------------------------------------------------  0

seq1  CAAAAAAAAAAAAAAAAAAAAAAGAAGAAGGTACCATTCATTATTTTGGC  1550
                                                        
seq2  --------------------------------------------------  0

seq1  TCACAGTTTTGTAGGGTTCACAGGTTTGTAGGTTTTAATGCACTGGTTGC  1600
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTGCTGCTTTGGGGCATGTGGCAACCTAGCACATCATAGTGATAGTGG  1650
                                                        
seq2  --------------------------------------------------  0

seq1  ATCAAACCATTTACCTCACAACAGGGAAACAGAAGAGAAAAAAGAGGACA  1700
                                                        
seq2  --------------------------------------------------  0

seq1  GGCTTTGCTCACACATCATAAGAGTACCCTCGAGGGACCCAAAGACCTCC  1750
                                                        
seq2  --------------------------------------------------  0

seq1  TACTAGACCCACCTCTGAGAGTGACCATTGCCTCCCAATAGCACCAAGTG  1800
                                                        
seq2  --------------------------------------------------  0

seq1  CTAGGTGTGGCTCTACTCTATTCTTTAGGGAATAATGGCAAGAAACAATT  1850
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTTCCTGCTTGGTCATTGCATTTTTATTTATTTATTTATTTATTTCTA  1900
                                                        
seq2  --------------------------------------------------  0

seq1  ATATATTCCACCTGAGGTTGAATGTGAGGCTAAGGCAACTGCTTATAACA  1950
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGGATGGATAGAGATCCCCACAGAGAAAGACAAAGACCTCCTGCCCC  2000
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGAAGGCACATGGCTAGTGACTTATCTTACATGCTGTGCCAGACGGTC  2050
                                                        
seq2  --------------------------------------------------  0

seq1  TGTTTGATGTCAGCCATTTTAAAGAATAGCTAATGTTTCTTGTGCTGGTT  2100
                                                        
seq2  --------------------------------------------------  0

seq1  AGTTTTTTTGTCATCGTGACACAAGTTGAGACCATCTGGGAAGGCAGAAC  2150
                                                        
seq2  --------------------------------------------------  0

seq1  TTCAGTTGAGAAAATGCCTCTAGGTAAGTCTTTGAGAACATTGTTTTGAT  2200
              | |  ||| | | ||| || |  | || |  | | ||||  |
seq2  -------AACACCATGAC-CAAGGCAATTTATAGA-AGGAATATTTTATT  41

seq1  TAGTGATTGATGT----GGGAGGGCCCAGCCCCTTGTGGTTGGCACCAAC  2246
      | | | || | ||    | ||||    || |         |  ||||| |
seq2  TGGGGCTTAAGGTTCAAGAGAGGTGAGAGTC---------TATCACCATC  82

seq1  CTTGGGAAGGTGGTCCTG-GGGTGTA---TAAGAAAGGTAGCTGAGGGTC  2292
      |    | ||  || |||| | | |||   ||||   |||  ||  ||  |
seq2  C--CCGTAG--GGACCTGTGAGAGTAGGCTAAGCGTGGTGACT--GGAGC  126

seq1  TGGAGA-------GATGGCTCAGCATTTAAGAGCACCAACTGCTCTTCCA  2335
      |||| |       || |||||  ||| | | |  |||||| |       |
seq2  TGGAAACAGATCTGAGGGCTC-TCATCTCAAATTACCAACAG------GA  169

seq1  AAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCC  2385
      ||    | |||   | ||| | | ||    |||||         ||||  
seq2  AA----CAGAG-GGAGATCACTGGAA----ATGGT---------CCATGA  201

seq1  ATAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGTCAGCTATATTG  2435
       |  ||| | || |                     ||| |  |       
seq2  CTTTTGAAAGCTCA---------------------AAGCCGCC-------  223

seq1  TGTACTTAGATATAATAATAAGGGGCTGGTGAGATGGCTCAGCAGGTAAG  2485
                            ||||| | ||||||| ||||  | ||||
seq2  ----------------------GGGCTAGAGAGATGGTTCAGTGGTTAAG  251

seq1  AGCACCCGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCAC  2535
      |||| ||| ||||||||||||||||| |||||||||||||||||||||||
seq2  AGCA-CCGGCTGCTCTTCCGAAGGTCATGAGTTCAAATCCCAGCAACCAC  300

seq1  ATGGTGGCTCACAACCATCCCTAACAAGATCTGACTCCCTCTTCTGGTGT  2585
      |||||||||||||||||||  |||  ||||||||  ||||||||||||| 
seq2  ATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGC  350

seq1  GTCTGAAGACAGCTACAGTGTACTTACACATAATAAATAAAAACAAAGC-  2634
       |||||||||||||||||||| |||| | ||||||   | ||| ||| | 
seq2  ATCTGAAGACAGCTACAGTGTGCTTAGATATAATA---ATAAATAAATCT  397

seq1  ---AAAACACCATGACCAAGGCAATGTACATTAAAAAAAAAAGATATAAT  2681
         |||| |  | ||  |||                              
seq2  TAGAAAAAAGAAAGA--AAG------------------------------  415

seq1  AATAAATAAGTCTTTTTTTTTAAAAAAAAAAGAAGAAGAAGAAGAAGAAG  2731
                                                        
seq2  --------------------------------------------------  415

seq1  CGCCGGGCATGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAG  2781
                                                        
seq2  --------------------------------------------------  415

seq1  GCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCC  2831
                                                        
seq2  --------------------------------------------------  415

seq1  AGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAACAACAA  2881
                                                        
seq2  --------------------------------------------------  415

seq1  AAAAAAAAAAAAAAGAAAAAGAAAGAAAG  2910
                                   
seq2  -----------------------------  415

seq1: chr1_72045035_72046172
seq2: B6Ng01-042I18.g_66_1194

seq1  GAATTCTTCCCCATCTGTCAGGGACCGTCCATGTGATATTTCCTTCCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCCATCTGTCAGGGACCGTCCATGTGATATTTCCTTCCTTT  50

seq1  GCTTTTGCTAATCGATTAACTAGAGATCGAAGGTACTTCCCCCAAGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTAATCGATTAACTAGAGATCGAAGGTACTTCCCCCAAGAAAT  100

seq1  AAAAGTAACACTGCTACAAGCAACCCAGAGAAGCTGGGCAGAGGTTAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAACACTGCTACAAGCAACCCAGAGAAGCTGGGCAGAGGTTAGGC  150

seq1  GCAGGTGAGCATCACCATAGGCTGGTCACCATGTCGCAGTTAGCCCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGAGCATCACCATAGGCTGGTCACCATGTCGCAGTTAGCCCAGAG  200

seq1  TAAGGTGTCAGGATGCTTTATTGTGCCTAGGACAAGAAAGAAAACTGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTCAGGATGCTTTATTGTGCCTAGGACAAGAAAGAAAACTGGAA  250

seq1  AACAATAATGTGAGAAATTGAATTGAAATTTTTGTAGACGTCTGTTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAATGTGAGAAATTGAATTGAAATTTTTGTAGACGTCTGTTGAAC  300

seq1  ACAAAAGGAAACTAATTCCTTATTACGGTAGTTTCTAAAGTCCTAACTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGGAAACTAATTCCTTATTACGGTAGTTTCTAAAGTCCTAACTAG  350

seq1  AAAAAGACTAATCCTGTGCCAAGGATGCCCAAAACCCTTCCTGTCAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGACTAATCCTGTGCCAAGGATGCCCAAAACCCTTCCTGTCAACCC  400

seq1  ACACCTCAATCTCGTGGGCCACACTGAAACCTGGATGCAAGTCAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCAATCTCGTGGGCCACACTGAAACCTGGATGCAAGTCAAGACAA  450

seq1  CAGAATGGTCAGTAAGGGATGGTAATCACTGCAGGAAACTAGGACAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGTCAGTAAGGGATGGTAATCACTGCAGGAAACTAGGACAATGT  500

seq1  AGGGCATGAAAAATTGTAGGGGAGACAAAGACATTTTATTTCCATTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCATGAAAAATTGTAGGGGAGACAAAGACATTTTATTTCCATTTAAA  550

seq1  CCATTCTAGAAGTCATGATCTCATTGGATAGGAATAGCTTGTTCTTAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAGAAGTCATGATCTCATTGGATAGGAATAGCTTGTTCTTAGGG  600

seq1  AAAGAGAAGAAAATAAAGTAGAAAAGCTCTCTTTCCCAGCATTCAGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAGAAAATAAAGTAGAAAAGCTCTCTTTCCCAGCATTCAGTGAT  650

seq1  TCTAAACCAGTCCTAACATGGAACCCAGTGAAGACTAAATACAGCCTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCAGTCCTAACATGGAACCCAGTGAAGACTAAATACAGCCTCCA  700

seq1  ATAAAAGCTGAGGATTGCCCAATCACTAGGGATCAATATTGTTCCCAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGCTGAGGATTGCCCAATCACTAGGGATCAATATTGTTCCCAGAT  750

seq1  ACAGACGTCTAGAGACTCTCCAAGCATACATTGTGCCCTTCTTATTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACGTCTAGAGACTCTCCAAGCATACATTGTGCCCTTCTTATTTATC  800

seq1  TTGATTAAAAATATAAGTTAAAGTAGTAACAACAAATACATCAAACATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTAAAAATATAAGTTAAAGTAGTAACAACAAATACATCAAACATGT  850

seq1  ACTATATATGTCAGGCTCTGAATTGTTCCAACCACTGAGTGCCACAACTA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACTATATATGTCACGCTCTGAATTGTTCCAACCACTGAGTGCCACAACTA  900

seq1  CTAGGTTCTTGCTTTACATGTAAGATAAACGCAGTTTGGAGATTAATCGG  950
      ||| |||||||||||||||||||||||||||||||||||||| ||||| |
seq2  CTA-GTTCTTGCTTTACATGTAAGATAAACGCAGTTTGGAGA-TAATC-G  947

seq1  GACTAAAGTTGCTTAGCTAGGACATGGTAAGACAAAGTCCCGGTATAAGC  1000
      |||||||| |||||||||||||||||||||||||||||||| |||| |||
seq2  GACTAAAG-TGCTTAGCTAGGACATGGTAAGACAAAGTCCC-GTATTAGC  995

seq1  TTTTGATATATTTTCAGAATGGTCTTTCATTGTCATGGGACCATCCCTTC  1050
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TTTTGATATATTTTCAGAATGGTCTTTCATTGTC-TTGGACCATCCCTTC  1044

seq1  ACATTGCCTAGCAAGGATGAG-ATTCTTATATTGTTCTAGATGACCCCCA  1099
      | |||||||||| |||||||| ||| |||||||| ||||||||  |||||
seq2  A-ATTGCCTAGC-AGGATGAGAATTTTTATATTG-TCTAGATGGACCCCA  1091

seq1  GATCTCTACATGGAACACCCCCATCAG-AAGTAACTAGAT  1138
      ||||||||   ||||| |||||||||| ||||||| ||||
seq2  GATCTCTA-TGGGAACCCCCCCATCAGAAAGTAAC-AGAT  1129