BAC Information

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BAC

Clone NameB6Ng01-042J13
Chromosome6 (Build37)X (Build37)
Map Location 35,386,691 - 35,387,207114,227,565 - 114,228,761
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J13.bB6Ng01-042J13.g
ACCDH868922DH868923
length9641,175
definitionDH868922|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J13, 5' end.DH868923|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,386,691 - 35,387,207)(114,227,565 - 114,228,761)
sequence
gaattcctgatctttccaggacttttatcatgaatgggtgttggattttt
gcaaatgctttctctgcaactgatgagatgatcatgtggtttttgtcttt
gagtttgtctatataatgaattatgttgatagattaccatatagtgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaattgtgccttcatagaatgagttg
ggtagagtaccttctacatctattttgtggaatagtttgtgaagaactgg
gattagatcttctttaaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttgattgggagactattaatgactgcttctatgtct
ttaggggatataggactgtttatatcattagcctgatcttgatttaactt
tggtacctggtatctgtctagaaacttgtccatttaatccaggttctcca
gttttgttgagtatagccttttgtagaaggatctgatggtgtttggattt
ctttaggatctgttgttatgtctcccttttcatttctgattttgttaatt
aaaatgctttcactgtgacctctagtgagtctgactaagggtgtgtctac
cttgttgattttctcaaagaaccagctcctcatttggttgattctttgaa
tagttcttcttgtttccacttggttgatttcgcccctgagtttgacttat
ttcctgctgtctactcctcttgggtgaatttgctttcttttatctatagc
ttttaggtgtgttgtcaagctgctaatgtttgctctcactagtttctttt
tggagacactcaga
gaattccaaattagacacacagatacaagtatcaggttaagatctgcatg
taaaaacaagcttatgattttatttctagacctggattacctcattagtg
caattttctccatttactaatgaatttcagtttataatgaaataaactgg
cattgtgtacatgtactatatttttattatccattcatcaggtgattgac
atctgggctgattccatttctcaacttttataaatgaagctgcaataaac
atggatgtgcaagtgtctctggagtaggaaataaattatttcaagtatat
gatcagcagtatgcactactttttacactaagcatatctcatttcatttc
acatttcatgcagctctgctatattctgataaatttgctaaaagaatgag
aaagcatcagcctccatctttggaggtagtgttcatagtggaaactgagt
tttttttttttctctaactcttctctagtgggaagaattacctcaattca
tgatagtaagaatagtcaaacttttaaaatgtttaaagagaagactcata
ttctctgtcctttgtgaggggaagtctacatgtctcttaaaaactctctt
gtgaccccaaaatttatattttttctagttttttccatattattatgtat
atatttaaatgcaaaaattatctttctataaagatatctttcaataaatt
aaagttaaaaataaaacctacaggaaatactccacaattgaaaaaaaaaa
gaaaagaaaagaaaaagaaagaaagaaagaaagagaagaaaatacctttt
tacctcaaaaggcatacacaaatgatgagaagcagacaatattagcaaat
tatgtgtgctaaaaatttaatatgattgatttctatggttccacaacaaa
aaccactcacaaagagcaaggaaattgatagaccttgcccaaaagaaagt
ctggaaacttttatatacacatggagatatactcaatatctagaggaatt
caatgaaaataaaaatgaaagtctcaagcaaattcccaaagtactttcac
aaaaaccaatcaatgttcttgtcgatattttgtctttaattactcagata
ggaatctcctttttttcattctaagtattaatgtatttctaaggttagag
aaatgctatgattctatataaccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35386691_35387207
seq2: B6Ng01-042J13.b_42_558 (reverse)

seq1  AGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAAC  50
      ||||| ||||| |||||||| ||||||||||| |||||||||||||||| 
seq2  AGTCCTATATCCCCTAAAGACATAGAAGCAGTCATTAATAGTCTCCCAAT  50

seq1  CAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCAGACCT  100

seq1  TCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAATAGAA  150
      | |||||||||||||| ||| |||| ||||||||||| ||||||||||| 
seq2  TTAAAGAAGATCTAATCCCAGTTCTTCACAAACTATTCCACAAAATAGAT  150

seq1  GTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACTCTGAT  200
      |||||||||||||||||||||||||| ||||||| ||| |||||||||||
seq2  GTAGAAGGTACTCTACCCAACTCATTCTATGAAGGCACAATTACTCTGAT  200

seq1  ACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACCAATTT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACCAATTT  250

seq1  CTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTAACCGA  300
      | ||||||||||||||||||||||||||||||||| |||| |||||||||
seq2  CCCTTATGAATATCGATGCAAAAATCCTCAATAAAGTTCTTGCTAACCGA  300

seq1  ATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGTTTCAT  350

seq1  TCCAGGGATGCAGGGATGGTTCAATATACGAAAATCCATCAATGTAATCC  400
       |||||||||||||||||||||| |||| |  |||| |||||  |||| |
seq2  CCCAGGGATGCAGGGATGGTTCACTATATGGTAATCTATCAACATAATTC  400

seq1  ATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGTTAGAT  450
      |||||||| |||||||||||||||||||||||||||||||||| | || |
seq2  ATTATATAGACAAACTCAAAGACAAAAACCACATGATCATCTCATCAGTT  450

seq1  GCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTTT  500
      ||||| ||||||||||  || ||||||||||||||||||||||||||  |
seq2  GCAGAGAAAGCATTTGCAAAAATCCAACACCCATTCATGATAAAAGTCCT  500

seq1  GGAAAGATCAGGAATTC  517
      |||||||||||||||||
seq2  GGAAAGATCAGGAATTC  517

seq1: chrX_114227565_114228761
seq2: B6Ng01-042J13.g_64_1238 (reverse)

seq1  TAGGTTATATAGAAATCATTACTGCATTTTCTCTTAAACCTCTAAGAAAT  50
      |||||||||||| ||||||    ||| |||||||  |||  || ||||||
seq2  TAGGTTATATAG-AATCAT---AGCA-TTTCTCT--AAC--CTTAGAAAT  41

seq1  ACATGTATATACTTTATGAATG-AAACAAGAGGATTTCTATCCTGAGTAT  99
      |||| || ||||||   ||||| ||| |||  |||| |||| ||||||| 
seq2  ACAT-TA-ATACTT--AGAATGAAAAAAAGGAGATTCCTAT-CTGAGTA-  85

seq1  ATTAAAGACAAAATATCTGAACAGGACATGTGATTGTGTTTTTGTGAAGG  149
      ||||||||||||||||| ||  || |||| |||||| ||||||||||| |
seq2  ATTAAAGACAAAATATC-GACAAGAACAT-TGATTG-GTTTTTGTGAAAG  132

seq1  TACTTTGGGAATTTGCTTGAGGACTTTCATTTTTATTTTCATTTGAATTT  199
      |||||||||||||||||||| |||||||||||||||||||| ||||||| 
seq2  TACTTTGGGAATTTGCTTGA-GACTTTCATTTTTATTTTCA-TTGAATTC  180

seq1  CTCTAGATATTGAGTATATCTCCATGTGTATATTAAAAGTTTCCAGACTT  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCTAGATATTGAGTATATCTCCATGTGTATA-TAAAAGTTTCCAGACTT  229

seq1  TCTTTTGGGCAAGGTCTATTCAATTTCCTTGCTCTTTTGTGAGTGGTTTT  299
      |||||||||||||||||| ||||||||||||||| |||||||||||||||
seq2  TCTTTTGGGCAAGGTCTA-TCAATTTCCTTGCTC-TTTGTGAGTGGTTTT  277

seq1  TGTTGTGGAACCATAGAAATCAATCATATTAAATTTTTAGCACACATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGGAACCATAGAAATCAATCATATTAAATTTTTAGCACACATAAT  327

seq1  TTGCTAATATTGTCTGCTTCTCATCATTTGTGTATGCCTTTTGAGGTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATATTGTCTGCTTCTCATCATTTGTGTATGCCTTTTGAGGTAAA  377

seq1  AAGGTATTTTCTTCTCTTTCTTTCTTTCTTTCTTTTTCTTTTCTTTTCTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTCTTCTCTTTCTTTCTTTCTTTCTTTTTCTTTTCTTTTCTT  427

seq1  TTTTTTTTCAATTGTGGAGTATTTCCTGTAGGTTTTATTTTTAACTTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAATTGTGGAGTATTTCCTGTAGGTTTTATTTTTAACTTTAA  477

seq1  TTTATTGAAAGATATCTTTATAGAAAGATAATTTTTGCATTTAAATATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAAAGATATCTTTATAGAAAGATAATTTTTGCATTTAAATATAT  527

seq1  ACATAATAATATGGAAAAAACTAGAAAAAATATAAATTTTGGGGTCACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATAATATGGAAAAAACTAGAAAAAATATAAATTTTGGGGTCACAA  577

seq1  GAGAGTTTTTAAGAGACATGTAGACTTCCCCTCACAAAGGACAGAGAATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTTAAGAGACATGTAGACTTCCCCTCACAAAGGACAGAGAATA  627

seq1  TGAGTCTTCTCTTTAAACATTTTAAAAGTTTGACTATTCTTACTATCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTTCTCTTTAAACATTTTAAAAGTTTGACTATTCTTACTATCATG  677

seq1  AATTGAGGTAATTCTTCCCACTAGAGAAGAGTTAGAGAAAAAAAAAAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAGGTAATTCTTCCCACTAGAGAAGAGTTAGAGAAAAAAAAAAAAC  727

seq1  TCAGTTTCCACTATGAACACTACCTCCAAAGATGGAGGCTGATGCTTTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTCCACTATGAACACTACCTCCAAAGATGGAGGCTGATGCTTTCT  777

seq1  CATTCTTTTAGCAAATTTATCAGAATATAGCAGAGCTGCATGAAATGTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTTAGCAAATTTATCAGAATATAGCAGAGCTGCATGAAATGTGA  827

seq1  AATGAAATGAGATATGCTTAGTGTAAAAAGTAGTGCATACTGCTGATCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATGAGATATGCTTAGTGTAAAAAGTAGTGCATACTGCTGATCAT  877

seq1  ATACTTGAAATAATTTATTTCCTACTCCAGAGACACTTGCACATCCATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGAAATAATTTATTTCCTACTCCAGAGACACTTGCACATCCATGT  927

seq1  TTATTGCAGCTTCATTTATAAAAGTTGAGAAATGGAATCAGCCCAGATGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAGCTTCATTTATAAAAGTTGAGAAATGGAATCAGCCCAGATGT  977

seq1  CAATCACCTGATGAATGGATAATAAAAATATAGTACATGTACACAATGCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACCTGATGAATGGATAATAAAAATATAGTACATGTACACAATGCC  1027

seq1  AGTTTATTTCATTATAAACTGAAATTCATTAGTAAATGGAGAAAATTGCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTCATTATAAACTGAAATTCATTAGTAAATGGAGAAAATTGCA  1077

seq1  CTAATGAGGTAATCCAGGTCTAGAAATAAAATCATAAGCTTGTTTTTACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAGGTAATCCAGGTCTAGAAATAAAATCATAAGCTTGTTTTTACA  1127

seq1  TGCAGATCTTAACCTGATACTTGTATCTGTGTGTCTAATTTGGAATTC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCTTAACCTGATACTTGTATCTGTGTGTCTAATTTGGAATTC  1175