BAC Information

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BAC

Clone NameB6Ng01-042L20
Chromosome6 (Build37)6 (Build37)
Map Location 58,172,888 - 58,173,49257,270,946 - 57,271,966
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneV1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17, EG633683, LOC626649, LOC626659, LOC626672, LOC666893, LOC100041571, V1rc33
Downstream geneLOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik, Tigd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042L20.bB6Ng01-042L20.g
ACCDH869020DH869021
length967783
definitionDH869020|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L20, 5' end.DH869021|Mus musculus domesticus DNA, BAC clone: B6Ng01-042L20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(58,172,888 - 58,173,492)(57,270,946 - 57,271,966)
sequence
gaattctttattatcatgagagccaatttctattaagagcttctaatttt
tttctatctagtatcataaggtaatagttcaaaaatagaataggacaagg
aatggatgttgcagatgctgtttatcaggtttaggagttctcaggtggaa
tttttagggtcacttatgtatactatcttatcatctgcaaatagtgatag
tttgacttcttcctttccaatttgtatcccgttgatctctttttgttgtc
taattgctctggctaggacttcaagtactatattgaataggtagggagaa
agtgggcagccttgtccagttcctgattttagtgggattgtttcaagttt
ctatccatttagtttgaggttggctactggtttggtgtatattgctttta
ctatttttaggtatggtccttgaattcctcacctttccaaaacttttatc
atgaaggggtgttggattttgtcaaatgctttctcagcatctaaccagat
gatcatgtggtttttatctttgagtttgtttatatagaggattaagttga
tggatttccatacactaaaccatccctgcatctctggaatgaagcctact
tgatcatgatgaatgattgttttgatgtgttcttggatttgtttagtgag
aattttattgagtatttttgcatccatattcataagggaaattggtctga
agttctcttttcttttgtggagtctttatgtggtttaggtttcagagtaa
ctgtgacttcatagaatgaattgggtagagtactttctgtttctattttg
tgaaacagtttgaggaaaattggaattaggtctccttgaaggtctgatag
aactctccactaaacccatcttgtcctgggcttttttggttgggagacta
ttaatgactgttctatttctataggggatttggggctgtttagatgatta
atcctgattctgattta
gaattctgtggaaagggtggtagaaagactagaatagccagaatggatag
aaagcttcaaagaaacaaagccttataaatatatcaaaatggacatgcat
ataaactcagagactgtggcaacatgcacaggaactgtttggggtgtgcc
tgtgttgtcctagagtagaattgatatacatcccctccataatccaatag
ctatctccctttgaagccacttgcaaataaaaaattacttttcttcatag
tagtctcattggagaaacaaactactcttcagggtaggctctatgtcctg
cagtagatggacaacacaaaacagtcttaatggagtctttagtgatcctt
tgcctatatactatgacttctggttttgtatttttataagatctctgtgt
aagaacttgtgtgtttctgtgtctgtctgattgttgtgttttgctttggc
atgtttttcttctgtgtgttttgtcctattctaatttatttattttcttt
tttcttgttgtttattttactcatttcttagaagcctgcttattttctaa
agagagaaagaaatatcagtttgaatagtgaaggaagtgaagagtaactc
taaagaacagcagaaggagaaacactaaacagtttatagtgtatgaattt
tttttcaataaaaacaagagcacaattttaaatgggagggggtatggtgg
tgaatactttctaaatccataactggagaggtataaactggaagagccct
gatattatgatcttcacccatatcataaactat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_58172888_58173492
seq2: B6Ng01-042L20.b_42_645

seq1  GAATTCTTTATTATCATGAGAGCCAAATTCTATTAAGAGCTCCTAATTTT  50
      |||||||||||||||||||||||||| |||||||||||||| ||||||||
seq2  GAATTCTTTATTATCATGAGAGCCAATTTCTATTAAGAGCTTCTAATTTT  50

seq1  TTTCTATCTAGTATCATAAGGTGATAATTGAAATATAGAATAGGATAAGG  100
      |||||||||||||||||||||| ||| || ||| ||||||||||| ||||
seq2  TTTCTATCTAGTATCATAAGGTAATAGTTCAAAAATAGAATAGGACAAGG  100

seq1  AATGGATGTTGCAGATGCTGTTTATAGGGTTTAGGAGTTCTCTGGTGGAA  150
      |||||||||||||||||||||||||  ||||||||||||||| |||||||
seq2  AATGGATGTTGCAGATGCTGTTTATCAGGTTTAGGAGTTCTCAGGTGGAA  150

seq1  TTTTTAGGGTCACTTATGTATACTATCATATCATCGGCAAATATTGATAG  200
      ||||||||||||||||||||||||||| ||||||| ||||||| ||||||
seq2  TTTTTAGGGTCACTTATGTATACTATCTTATCATCTGCAAATAGTGATAG  200

seq1  TTTGAGTTCTTCCTTTCCAATTCGTATCCCGTTGATCTCTTTTTGTTGTC  250
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGACTTCTTCCTTTCCAATTTGTATCCCGTTGATCTCTTTTTGTTGTC  250

seq1  TAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGGTAGGTAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||| || |
seq2  TAATTGCTCTGGCTAGGACTTCAAGTACTATATTGAATAGGTAGGGAGAA  300

seq1  AGTGGGCAGCCTTCTCTACTCCCTGATTTTAGTGCGATTGCTTTAAGTTT  350
      ||||||||||||| || | | ||||||||||||| ||||| || ||||||
seq2  AGTGGGCAGCCTTGTCCAGTTCCTGATTTTAGTGGGATTGTTTCAAGTTT  350

seq1  CTATCCATTTAGTTTGAGGTTGGCTACTGGCTTGCTGTATATTG-TTTTA  399
      |||||||||||||||||||||||||||||| ||| ||||||||| |||||
seq2  CTATCCATTTAGTTTGAGGTTGGCTACTGGTTTGGTGTATATTGCTTTTA  400

seq1  CTATGTTTAGGTAGGGCCCTTGAATTCCTGACCTTTCCAAGACTTTTTTA  449
      |||| |||||||| || |||||||||||| |||||||||| ||  |||||
seq2  CTATTTTTAGGTATGGTCCTTGAATTCCTCACCTTTCCAAAAC--TTTTA  448

seq1  TCATGAAGGAGTATTGAATTTTTTCAAATGCTTTCTCAGCCTCTAACGAG  499
      ||||||||| || ||| ||||| ||||||||||||||||| |||||| ||
seq2  TCATGAAGGGGTGTTGGATTTTGTCAAATGCTTTCTCAGCATCTAACCAG  498

seq1  ATGATCATGTGGTTTTTATGTTTAAGTTTATTTCTATAGTGGATTATGTT  549
      ||||||||||||||||||| ||| ||||| ||| ||||| |||||| |||
seq2  ATGATCATGTGGTTTTTATCTTTGAGTTTGTTTATATAGAGGATTAAGTT  548

seq1  GATGGATTTCCATACATTAAACCATCCCTGCATCTCTGGAATGAAGCCTC  599
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  GATGGATTTCCATACACTAAACCATCCCTGCATCTCTGGAATGAAGCCTA  598

seq1  CTTGAT  605
      ||||||
seq2  CTTGAT  604

seq1: chr6_57270946_57271966
seq2: B6Ng01-042L20.g_230_849

seq1  AGTAGAATTGATATACATCCCCTCCATAATCCAATAGCTATCTCCCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAATTGATATACATCCCCTCCATAATCCAATAGCTATCTCCCTTTG  50

seq1  AAGCCACTTGCAAATAAAAAATTACTTTTCTTCATAGTAGTCTCATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTTGCAAATAAAAAATTACTTTTCTTCATAGTAGTCTCATTGGA  100

seq1  GAAACAAACTACTCTTCAGGGTAGGCTCTATGTCCTGCAGTAGATGGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAACTACTCTTCAGGGTAGGCTCTATGTCCTGCAGTAGATGGACA  150

seq1  ACACAAAACAGTCTTAATGGAGTCTTTAGTGATCCTTTGCCTATATACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAACAGTCTTAATGGAGTCTTTAGTGATCCTTTGCCTATATACTA  200

seq1  TGACTTCTGGTTTTGTATTTTTATAAGATCTCTGTGTAAGAACTTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTCTGGTTTTGTATTTTTATAAGATCTCTGTGTAAGAACTTGTGTG  250

seq1  TTTCTGTGTCTGTCTGATTGTTGTGTTTTGCTTTGGCATGTTTTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTCTGTCTGATTGTTGTGTTTTGCTTTGGCATGTTTTTCTTCT  300

seq1  GTGTGTTTTGTCCTATTCTAATTTATTTATTTTCTTTTTTCTTGTTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGTCCTATTCTAATTTATTTATTTTCTTTTTTCTTGTTGTTT  350

seq1  ATTTTACTCATTTCTTAGAAGCCTGCTTATTTTCTAAAGAGAGAAAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTCATTTCTTAGAAGCCTGCTTATTTTCTAAAGAGAGAAAGAAA  400

seq1  TATCAGTTTGAATAGTGAAGGAAGTGAAGAGTAACTCTAAAGAACAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTGAATAGTGAAGGAAGTGAAGAGTAACTCTAAAGAACAGCAG  450

seq1  AAGGAGAAACACTAAACAGTTTATAGTGTATGAATTTTTTTTCAATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAAACACTAAACAGTTTATAGTGTATGAATTTTTTTTCAATAAAA  500

seq1  ACAAGAGCACAATTTTAAATGGGAGGGGGTATGGTGGTGAATAC-TTCTA  549
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACAAGAGCACAATTTTAAATGGGAGGGGGTATGGTGGTGAATACTTTCTA  550

seq1  ATCCCATAACTGGAGAGGTAGAAACTGGAAGAGCCATGATATTATGATCT  599
      |  ||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  AATCCATAACTGGAGAGGTATAAACTGGAAGAGCCCTGATATTATGATCT  600

seq1  TCACCCATATCATAGACAGAGAGATCCTCTATAATGACACAAGGTGAATG  649
      |||||||||||||| |            ||||                  
seq2  TCACCCATATCATAAA------------CTAT------------------  620

seq1  GAGTGTGAGGAACAACAGCCAAGGTTGTCTCCTGGCCTCCATGTGCACAT  699
                                                        
seq2  --------------------------------------------------  620

seq1  ATACACACATCCTTCAGCTGTACACACATACATACATACATACATACATA  749
                                                        
seq2  --------------------------------------------------  620

seq1  CATACACACACACACACATACATACATACATACATACATGCATACAGATA  799
                                                        
seq2  --------------------------------------------------  620

seq1  CATAATAAATACATTGTACAACATGCATGTATATAAATTTTTTACCAATA  849
                                                        
seq2  --------------------------------------------------  620

seq1  ATATTTCTATAACTGTAGATAGAAAAATATATAAATATACAGACACATAA  899
                                                        
seq2  --------------------------------------------------  620

seq1  TATTTTTTACATAACTAATTAAGTAACTGTTGAAAAATCTAAATTTTTAT  949
                                                        
seq2  --------------------------------------------------  620

seq1  ACTCACATTATTTTTATGGATCCAAAGAAATTAAGGAACAGAATTACAGC  999
                                                        
seq2  --------------------------------------------------  620

seq1  TACAATAAAATACTGAAACTAT  1021
                            
seq2  ----------------------  620