BAC Information

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BAC

Clone NameB6Ng01-043D08
Chromosome6 (Build37)
Map Location 45,218,160 - 45,351,953
singlet/doubletdoublet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D08.bB6Ng01-043D08.g
ACCDH869340DH869341
length1,0211,103
definitionDH869340|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D08, 5' end.DH869341|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,351,351 - 45,351,953)(45,218,160 - 45,219,274)
sequence
gaattctccaaacataaaatgaaatatatttttaaagcagaacttccatg
taattcttaatggatgtaagatttctttagaaaagtaattattaattcat
taagtattccatataagttgatcatattaacacatttgcctccatctcat
ctcttccaaatcctctcttcctttcattactcacccagttttgagtttcc
tttttaaccaattaagatcaatttgtgacacccaaatattcatggatatt
gagttttccactggagtaggctcatcctccaagggaccgagagaaaactg
atccctttcctccctaaatgatcaattttgaacggctatggattatacag
gtggagattcatgctcgtctcctctgggaaggccagaattttttcagaca
tgagcttgcatggtctggtcttgtgtgaatttatgtgtgaagttacatgt
tctgtccacttctgtgaaacagtttttcttaagtcttccactgcctctag
ctttgagaatttcaatgtcccttcttacacaatgatccctgagcttgtgg
gtagaacttttggagttgtagtaaatatagtccatccatggctgaacatt
cagtaatatattagtctctatactaggccaattggaagtctttgtttcaa
taaccctctacttttaagtatgtactaacactaaactatatttctgtgaa
ggggataaaaacaatagatttcaattttatagtgatattttcaacatagt
cattatattctttagcttatgtttactgttctttatcagatgttgagatc
tatgtgccatactaaaatattatgtcactatttatttgtgcaagcacatt
gaactacttaatacaaggggattaacctttcactgatataacaagagtct
cagaaaaaggacatttatatgttttccagttctaattgtatataaaacta
atagttcattgcattttttcttacatgcaacattaaattcctcagagatt
tcaaatgttatgaaagaaatt
gaattcttaattcagaaggatgatgccataatttgggattaatagagatt
tacaaaattgcatatgtgagatagaacagaatgccattcctatggagtat
gcataggacacaggcttgatgtttaaacaagatatgaggaatatttttat
tttagtgtgaccattccaggcagttgggggacacctcaggagtcttttaa
aacaacttcctctgaactctagaagtacatttgaagattgtaagaatcct
actttctctcgtcagaccccagtcttcacatttgtgtaaataaatctttt
aattccttaatctctagtccatccaaatccacaaggctgtaatcctgact
cttgaatattttataatcaacgtgcattctaatgagaaagcaacatattg
tcccttatgactttagggcaagctcttgttcactggcagattgtcataac
tagtcacagctgccaatcagtcacatgttagcattgctgtagggctttat
gtgtgttttggtaggcttttagaaagccataatgatttttataaaaattt
catttttctctttctgaaataatggcacttatatatttagatacataaca
tgcaaatattaattctggaaagatagtagcattgttttgttctactttct
ttccaggaaaaatatggtcatttgtaggaattctggttctgattggaaaa
gatcattgcaactgggctttttgattttttttacttcctgcataaaagga
gggagtaggtaggctcctgggaccctcacctaaatatttactcccttaaa
cagccttataaaattttactttaattgcactttacctcagggtattgaga
aagggtaacaggatggagatgcaggaggattagaaaagtgctccttatgt
acatttggaatggccaaattcctgttgtgtgaagcctttcaagtgagtcc
tctgaaaggagcacacaccctcctgtaataaacacataaatgtatttgtc
tccagatcacaagaacatggagaaatcacacttctgttgtgtcctgaccc
taatatactttcatccacacccacagagatatttaaatacaagaatattt
atg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_45351351_45351953
seq2: B6Ng01-043D08.b_45_647 (reverse)

seq1  CTGAATGTTCAGCCATGGATGGACTATATTTACTACAACTCCAAAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGTTCAGCCATGGATGGACTATATTTACTACAACTCCAAAAGTTC  50

seq1  TACCCACAAGCTCAGGGATCATTGTGTAAGAAGGGACATTGAAATTCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACAAGCTCAGGGATCATTGTGTAAGAAGGGACATTGAAATTCTCA  100

seq1  AAGCTAGAGGCAGTGGAAGACTTAAGAAAAACTGTTTCACAGAAGTGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAGGCAGTGGAAGACTTAAGAAAAACTGTTTCACAGAAGTGGAC  150

seq1  AGAACATGTAACTTCACACATAAATTCACACAAGACCAGACCATGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGTAACTTCACACATAAATTCACACAAGACCAGACCATGCAAGC  200

seq1  TCATGTCTGAAAAAATTCTGGCCTTCCCAGAGGAGACGAGCATGAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGAAAAAATTCTGGCCTTCCCAGAGGAGACGAGCATGAATCTC  250

seq1  CACCTGTATAATCCATAGCCGTTCAAAATTGATCATTTAGGGAGGAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGTATAATCCATAGCCGTTCAAAATTGATCATTTAGGGAGGAAAGG  300

seq1  GATCAGTTTTCTCTCGGTCCCTTGGAGGATGAGCCTACTCCAGTGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTTTTCTCTCGGTCCCTTGGAGGATGAGCCTACTCCAGTGGAAAA  350

seq1  CTCAATATCCATGAATATTTGGGTGTCACAAATTGATCTTAATTGGTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATATCCATGAATATTTGGGTGTCACAAATTGATCTTAATTGGTTAA  400

seq1  AAAGGAAACTCAAAACTGGGTGAGTAATGAAAGGAAGAGAGGATTTGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAACTCAAAACTGGGTGAGTAATGAAAGGAAGAGAGGATTTGGAA  450

seq1  GAGATGAGATGGAGGCAAATGTGTTAATATGATCAACTTATATGGAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGATGGAGGCAAATGTGTTAATATGATCAACTTATATGGAATAC  500

seq1  TTAATGAATTAATAATTACTTTTCTAAAGAAATCTTACATCCATTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAATTAATAATTACTTTTCTAAAGAAATCTTACATCCATTAAGAA  550

seq1  TTACATGGAAGTTCTGCTTTAAAAATATATTTCATTTTATGTTTGGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATGGAAGTTCTGCTTTAAAAATATATTTCATTTTATGTTTGGAGAA  600

seq1  TTC  603
      |||
seq2  TTC  603

seq1: chr6_45218160_45219274
seq2: B6Ng01-043D08.g_66_1168

seq1  GAATTCTTAATTCAGAAGGATGATGCCATAATTTGGGATTAATAGAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAATTCAGAAGGATGATGCCATAATTTGGGATTAATAGAGATT  50

seq1  TACAAAATTGCATATGTGAGATAGAACAGAATGCCATTCCTATGGAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATTGCATATGTGAGATAGAACAGAATGCCATTCCTATGGAGTAT  100

seq1  GCATAGGACACAGGCTTGATGTTTAAACAAGATATGAGGAATATTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGGACACAGGCTTGATGTTTAAACAAGATATGAGGAATATTTTTAT  150

seq1  TTTAGTGTGACCATTCCAGGCAGTTGGGGGACACCTCAGGAGTCTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGTGACCATTCCAGGCAGTTGGGGGACACCTCAGGAGTCTTTTAA  200

seq1  AACAACTTCCTCTGAACTCTAGAAGTACATTTGAAGATTGTAAGAATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTCCTCTGAACTCTAGAAGTACATTTGAAGATTGTAAGAATCCT  250

seq1  ACTTTCTCTCGTCAGACCCCAGTCTTCACATTTGTGTAAATAAATCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTCGTCAGACCCCAGTCTTCACATTTGTGTAAATAAATCTTTT  300

seq1  AATTCCTTAATCTCTAGTCCATCCAAATCCACAAGGCTGTAATCCTGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTTAATCTCTAGTCCATCCAAATCCACAAGGCTGTAATCCTGACT  350

seq1  CTTGAATATTTTATAATCAACGTGCATTCTAATGAGAAAGCAACATATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATATTTTATAATCAACGTGCATTCTAATGAGAAAGCAACATATTG  400

seq1  TCCCTTATGACTTTAGGGCAAGCTCTTGTTCACTGGCAGATTGTCATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATGACTTTAGGGCAAGCTCTTGTTCACTGGCAGATTGTCATAAC  450

seq1  TAGTCACAGCTGCCAATCAGTCACATGTTAGCATTGCTGTAGGGCTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACAGCTGCCAATCAGTCACATGTTAGCATTGCTGTAGGGCTTTAT  500

seq1  GTGTGTTTTGGTAGGCTTTTAGAAAGCCATAATGATTTTTATAAAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTTTGGTAGGCTTTTAGAAAGCCATAATGATTTTTATAAAAATTT  550

seq1  CATTTTTCTCTTTCTGAAATAATGGCACTTATATATTTAGATACATAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTCTTTCTGAAATAATGGCACTTATATATTTAGATACATAACA  600

seq1  TGCAAATATTAATTCTGGAAAGATAGTAGCATTGTTTTGTTCTACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATATTAATTCTGGAAAGATAGTAGCATTGTTTTGTTCTACTTTCT  650

seq1  TTCCAGGAAAAATATGGTCATTTGTAGGAATTCTGGTTCTGATTGGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGAAAAATATGGTCATTTGTAGGAATTCTGGTTCTGATTGGAAAA  700

seq1  GATCATTGCAACTGGGCTTTTTGATTTTTTTTACTTCCTGCATAAAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATTGCAACTGGGCTTTTTGATTTTTTTTACTTCCTGCATAAAAGGA  750

seq1  GGGAGTAGGTAGGCTCCTGGGACCCTCACCTAAATATTTACTCCCTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTAGGTAGGCTCCTGGGACCCTCACCTAAATATTTACTCCCTTAAA  800

seq1  CAGCCTTATAAAATTTTACTTTAATTGCACTTTACCTCAGGGTATTGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTATAAAATTTTACTTTAATTGCACTTTACCTCAGGGTATTGAGA  850

seq1  AAGGGTAACAGGATGGAGATGCAGGAGGATTAGAAAAGTGCTCCTTATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAACAGGATGGAGATGCAGGAGGATTAGAAAAGTGCTCCTTATGT  900

seq1  ACATTTGGAATGGCCAAAATTCCTGTTGTGTGAAGCCTTTCAAGTGAGTC  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACATTTGGAATGGCC-AAATTCCTGTTGTGTGAAGCCTTTCAAGTGAGTC  949

seq1  CTTCTGAAAGGAGCACACACCCTCCTGTAATAAACACAATAAATGTATTT  1000
      | ||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  C-TCTGAAAGGAGCACACACCCTCCTGTAATAAACAC-ATAAATGTATTT  997

seq1  GTTCTCCAGATCACAAGAACATTGGAGAAATCACACTTCTGTTTGTTGTC  1050
      | ||||||||||||||||||| |||||||||||||||||||||   ||||
seq2  G-TCTCCAGATCACAAGAACA-TGGAGAAATCACACTTCTGTT--GTGTC  1043

seq1  CTGACCCTTAATATACTTTCATTCCACAACCCACAGAGATATTTTAATAA  1100
      ||||||| ||||||||||||| ||||| |||||||||||||||| ||| |
seq2  CTGACCC-TAATATACTTTCA-TCCAC-ACCCACAGAGATATTTAAAT-A  1089

seq1  CAAGAATATATTATG  1115
      ||||||||| |||||
seq2  CAAGAATAT-TTATG  1103