BAC Information

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BAC

Clone NameB6Ng01-044E20
Chromosome6 (Build37)
Map Location 83,926,138 - 84,060,757
singlet/doubletdoublet
Overlap geneZfml, Dysf, LOC665114
Upstream geneD6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok, Actg2, Stambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366
Downstream gene4930504D19Rik, Cyp26b1, Exoc6b, LOC665129, Npm3-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044E20.bB6Ng01-044E20.g
ACCDH870096DH870097
length1,1531,082
definitionDH870096|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E20, 5' end.DH870097|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,926,138 - 83,927,302)(84,059,664 - 84,060,757)
sequence
gaattctcatcatagtttgatttttgtttgttttgtgttctttttgtttg
tttttaagtacttttagccctgacttgaaaaacagtcctgttgatgaaag
tgaggtacaaacagcagctgatagttcctctgttaaacctagtgaggttg
aagaagaaactacttccaatattggaacagaaacttcagtgcatcaggaa
gaacttggtaaggaagaacccaaacaagcattgtgtgagtctgactttgc
aattcaaacactagaacttgaagctcaaggagcagaggtcagcatagaaa
ttcctcttgtagcatccactccagccaatattgagttattcagtgaaaat
atagatgagtctgctttaaaccagcagatgtacaccagtgactttgaaaa
ggaagaggcagaagttacaaaccctgaaactgaattagcagtatctgaca
gtgtcttcatagaagaaaggaacatcaagggaattatagaagattctcca
tctgaaacagaagatatattttctggaattgtacagcctatggtagatgc
catagctgaagtggataaacatgaaactgtttcagaagtactgccatctg
cttgtaatgtgacccaagcaccaggaagttacattgaagatgagaaggtt
gtgagcaaaaaggatattgctgaaaaagttatcttggatgaaaaggagga
agatgaatttaatgttaaggagaccagaatggatttacaagtaaaaacag
agaaggctgagaagaatgaagctatcatatttaaagaaaaattggagaag
attatagcagcaataagagaaaagccaattgaaagttctgtaatcaaggc
agacccaactaaaggagtggatcagaccagtaagcctgatgaaactggta
aaagtagtgtgctgactgtatcaaatgtatatagtagtaaatcagcatca
aggctactgtggtctcttctcctaaagcaaaaagtacacctttcaaaact
gaaagtcacagcacttcccaaaacctgtgcttagagagcaataaaggctg
aaagaaagtttcagccagaatttggtctgctttaaaataccagatcagct
tgcagaagccacagtaattcaaacccactcgaatggtgtacagaagggtg
cag
gaattcctgccccccccccttttcctcctccacctcgagctccccaccac
tagcctcccccagacggggccagccttcccaacccaaaatagcaacagca
aataaagaaatgtctagtttggggctcctctcctctgctggtgctcactt
tttccagcttgggtttaagttaaggaacaccagtgtttgcttggtctctg
cccgctgccaacatttttgtagcgcttgctcaggagctactggcaggctc
atgaactccgtggggaagacttcgagaaacaattctatatccttctttcc
ccccttcacttggaatcagggaacattttcagctcacattctcttggagg
cttcaggaccaagaggtcagaatggaggtaaaagtgttccagagtctacc
agccatttctacactgtgtccccctcctcaagccacatagacaggagagg
ggcagcctgtgagagcaatagggaagatggaacttgaggttagggacaaa
caaagaatgtcctcagatggtccgggagcaggtgggaaggtcatgaggtc
atggttcctgccaagcacacacacacacacacacacaaaacccttcccct
ccaaaagaccaatctcccagtgcatcaattatctcagtcttagctctctt
agttagagttagttgctgtgatgaaacactatgaccaaaggcaacttgga
gaggaaagggtttattgccttccaaattgttgttcatcactgaagaaggt
cagaaactcaaacagggcaggaacctgaaggcagacgctcataccgaggc
catagaggagtgctacttacgggtttgctcctcatggcttactcagcctg
ccttcttatagtacccaggaccaccagctcatgggtggcaccactcacaa
tgggctgggccctcccccttcaatcactaagtaagaaaatgcactatagg
cttgcctacacccaatctatggaggcattttaaaactaatgcttactctc
tcagatgactttagttgggtcaagttgacatgaactatcagcacactagc
ctagatggatctcccagtgctgacaggacagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83926138_83927302
seq2: B6Ng01-044E20.b_43_1195

seq1  GAATTCTCATCATAGTTTGATTTTTGTTTGTTTTGTGTTCTTTTTGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCATAGTTTGATTTTTGTTTGTTTTGTGTTCTTTTTGTTTG  50

seq1  TTTTTAAGTACTTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGTACTTTTAGCCCTGACTTGAAAAACAGTCCTGTTGATGAAAG  100

seq1  TGAGGTACAAACAGCAGCTGATAGTTCCTCTGTTAAACCTAGTGAGGTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACAAACAGCAGCTGATAGTTCCTCTGTTAAACCTAGTGAGGTTG  150

seq1  AAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAACTACTTCCAATATTGGAACAGAAACTTCAGTGCATCAGGAA  200

seq1  GAACTTGGTAAGGAAGAACCCAAACAAGCATTGTGTGAGTCTGACTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGTAAGGAAGAACCCAAACAAGCATTGTGTGAGTCTGACTTTGC  250

seq1  AATTCAAACACTAGAACTTGAAGCTCAAGGAGCAGAGGTCAGCATAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAACACTAGAACTTGAAGCTCAAGGAGCAGAGGTCAGCATAGAAA  300

seq1  TTCCTCTTGTAGCATCCACTCCAGCCAATATTGAGTTATTCAGTGAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTGTAGCATCCACTCCAGCCAATATTGAGTTATTCAGTGAAAAT  350

seq1  ATAGATGAGTCTGCTTTAAACCAGCAGATGTACACCAGTGACTTTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATGAGTCTGCTTTAAACCAGCAGATGTACACCAGTGACTTTGAAAA  400

seq1  GGAAGAGGCAGAAGTTACAAACCCTGAAACTGAATTAGCAGTATCTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCAGAAGTTACAAACCCTGAAACTGAATTAGCAGTATCTGACA  450

seq1  GTGTCTTCATAGAAGAAAGGAACATCAAGGGAATTATAGAAGATTCTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTCATAGAAGAAAGGAACATCAAGGGAATTATAGAAGATTCTCCA  500

seq1  TCTGAAACAGAAGATATATTTTCTGGAATTGTACAGCCTATGGTAGATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAACAGAAGATATATTTTCTGGAATTGTACAGCCTATGGTAGATGC  550

seq1  CATAGCTGAAGTGGATAAACATGAAACTGTTTCAGAAGTACTGCCATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTGAAGTGGATAAACATGAAACTGTTTCAGAAGTACTGCCATCTG  600

seq1  CTTGTAATGTGACCCAAGCACCAGGAAGTTACATTGAAGATGAGAAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATGTGACCCAAGCACCAGGAAGTTACATTGAAGATGAGAAGGTT  650

seq1  GTGAGCAAAAAGGATATTGCTGAAAAAGTTATCTTGGATGAAAAGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCAAAAAGGATATTGCTGAAAAAGTTATCTTGGATGAAAAGGAGGA  700

seq1  AGATGAATTTAATGTTAAGGAGACCAGAATGGATTTACAAGTAAAAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAATTTAATGTTAAGGAGACCAGAATGGATTTACAAGTAAAAACAG  750

seq1  AGAAGGCTGAGAAGAATGAAGCTATCATATTTAAAGAAAAATTGGAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCTGAGAAGAATGAAGCTATCATATTTAAAGAAAAATTGGAGAAG  800

seq1  ATTATAGCAGCAATAAGAGAAAAGCCAATTGAAAGTTCTGTAATCAAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGCAGCAATAAGAGAAAAGCCAATTGAAAGTTCTGTAATCAAGGC  850

seq1  AGACCCAACTAAAGGAGTGGATCAGACCAGTAAGCCTGATGAAACTGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAACTAAAGGAGTGGATCAGACCAGTAAGCCTGATGAAACTGGTA  900

seq1  AAAGTAGTGTGCTGACTGTATCAAATGTATATAGTAGTAAATCAAGCATC  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAGTAGTGTGCTGACTGTATCAAATGTATATAGTAGTAAATC-AGCATC  949

seq1  AAGGCTACTGTGGTCTCTTCTCCTAAAGCAAAAAGTACACCTTCAAAAAC  1000
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  AAGGCTACTGTGGTCTCTTCTCCTAAAGCAAAAAGTACACCTTTCAAAAC  999

seq1  TGAAAGTCACAGCACCTTCCCAAAACCTGTGCTTAGAGAGCAAATAAAGG  1050
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TGAAAGTCACAGCA-CTTCCCAAAACCTGTGCTTAGAGAGC-AATAAAGG  1047

seq1  CTGAAAAGAAAGTTTCAGCCAAGGAATTTGGTCTGCTTAAAAATACCAGA  1100
      ||| |||||||||||||||||  ||||||||||||||| |||||||||||
seq2  CTG-AAAGAAAGTTTCAGCCA--GAATTTGGTCTGCTTTAAAATACCAGA  1094

seq1  TCAGGCTTGGCAGAAAGCAACAGTAAATCCAAACCCACTCAGATTGGTGT  1150
      ||| |||| |||| |||| ||||| ||| ||||||||||| || ||||||
seq2  TCA-GCTT-GCAG-AAGCCACAGT-AATTCAAACCCACTC-GAATGGTGT  1139

seq1  TAACAG-AGGGTGCAG  1165
        |||| |||||||||
seq2  --ACAGAAGGGTGCAG  1153

seq1: chr6_84059664_84060757
seq2: B6Ng01-044E20.g_65_1146 (reverse)

seq1  GCTGTCCCTTGTTCCAGCACTTGGAGATCCATCCTAGGCTAGTGTGCTGG  50
      |||||||  |||  ||||||| |||||||||| ||||||||||||||| |
seq2  GCTGTCC--TGT--CAGCACTGGGAGATCCAT-CTAGGCTAGTGTGCT-G  44

seq1  ATAGTTTCATGTCAACTTGACCCAAACTAAAGTCATCTGAGAGGAGTAAG  100
      |||| |||||||||||||||||| |||||||||||||||||| |||||||
seq2  ATAG-TTCATGTCAACTTGACCC-AACTAAAGTCATCTGAGA-GAGTAAG  91

seq1  CATTAGTTTTAAAAATGCCTCCATAAGATTGGGTTGTAGGCAAGCCTATA  150
      |||||||||| ||||||||||||| |||||||| ||||||||||||||||
seq2  CATTAGTTTT-AAAATGCCTCCAT-AGATTGGG-TGTAGGCAAGCCTATA  138

seq1  GTGCATTTTCTTACTTAGTGATTGAAGGGGGAGGGCCCAGCCCATTGTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATTTTCTTACTTAGTGATTGAAGGGGGAGGGCCCAGCCCATTGTGA  188

seq1  GTGGTGCCACCCATGAGCTGGTGGTCCTGGGTACTATAAGAAGGCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCCACCCATGAGCTGGTGGTCCTGGGTACTATAAGAAGGCAGGCT  238

seq1  GAGTAAGCCATGAGGAGCAAACCCGTAAGTAGCACTCCTCTATGGCCTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAGCCATGAGGAGCAAACCCGTAAGTAGCACTCCTCTATGGCCTCG  288

seq1  GTATGAGCGTCTGCCTTCAGGTTCCTGCCCTGTTTGAGTTTCTGACCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCGTCTGCCTTCAGGTTCCTGCCCTGTTTGAGTTTCTGACCTTC  338

seq1  TTCAGTGATGAACAACAATTTGGAAGGCAATAAACCCTTTCCTCTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATGAACAACAATTTGGAAGGCAATAAACCCTTTCCTCTCCAAG  388

seq1  TTGCCTTTGGTCATAGTGTTTCATCACAGCAACTAACTCTAACTAAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTGGTCATAGTGTTTCATCACAGCAACTAACTCTAACTAAGAGA  438

seq1  GCTAAGACTGAGATAATTGATGCACTGGGAGATTGGTCTTTTGGAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACTGAGATAATTGATGCACTGGGAGATTGGTCTTTTGGAGGGGA  488

seq1  AGGGTTTTGTGTGTGTGTGTGTGTGTGTGCTTGGCAGGAACCATGACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTGTGTGTGTGTGTGTGTGTGTGCTTGGCAGGAACCATGACCTC  538

seq1  ATGACCTTCCCACCTGCTCCCGGACCATCTGAGGACATTCTTTGTTTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTCCCACCTGCTCCCGGACCATCTGAGGACATTCTTTGTTTGTC  588

seq1  CCTAACCTCAAGTTCCATCTTCCCTATTGCTCTCACAGGCTGCCCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCTCAAGTTCCATCTTCCCTATTGCTCTCACAGGCTGCCCCTCTC  638

seq1  CTGTCTATGTGGCTTGAGGAGGGGGACACAGTGTAGAAATGGCTGGTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATGTGGCTTGAGGAGGGGGACACAGTGTAGAAATGGCTGGTAGA  688

seq1  CTCTGGAACACTTTTACCTCCATTCTGACCTCTTGGTCCTGAAGCCTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAACACTTTTACCTCCATTCTGACCTCTTGGTCCTGAAGCCTCCA  738

seq1  AGAGAATGTGAGCTGAAAATGTTCCCTGATTCCAAGTGAAGGGGGGAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGTGAGCTGAAAATGTTCCCTGATTCCAAGTGAAGGGGGGAAAG  788

seq1  AAGGATATAGAATTGTTTCTCGAAGTCTTCCCCACGGAGTTCATGAGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATATAGAATTGTTTCTCGAAGTCTTCCCCACGGAGTTCATGAGCCT  838

seq1  GCCAGTAGCTCCTGAGCAAGCGCTACAAAAATGTTGGCAGCGGGCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTAGCTCCTGAGCAAGCGCTACAAAAATGTTGGCAGCGGGCAGAGA  888

seq1  CCAAGCAAACACTGGTGTTCCTTAACTTAAACCCAAGCTGGAAAAAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAAACACTGGTGTTCCTTAACTTAAACCCAAGCTGGAAAAAGTGA  938

seq1  GCACCAGCAGAGGAGAGGAGCCCCAAACTAGACATTTCTTTATTTGCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGCAGAGGAGAGGAGCCCCAAACTAGACATTTCTTTATTTGCTGT  988

seq1  TGCTATTTTGGGTTGGGAAGGCTGGCCCCGTCTGGGGGAGGCTAGTGGTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTTGGGTTGGGAAGGCTGGCCCCGTCTGGGGGAGGCTAGTGGTG  1038

seq1  GGGAGCTCGAGGTGGAGGAGGAAAAGGGGGGGGGGCAGGAATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTCGAGGTGGAGGAGGAAAAGGGGGGGGGGCAGGAATTC  1082