BAC Information

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BAC

Clone NameB6Ng01-045A07
Chromosome6 (Build37)
Map Location 19,175,246 - 19,220,865
singlet/doubletdoublet
Overlap genenone
Upstream geneCftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045A07.bB6Ng01-045A07.g
ACCDH870600DH870601
length1,082981
definitionDH870600|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A07, 5' end.DH870601|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,175,246 - 19,176,333)(19,219,869 - 19,220,865)
sequence
gaattccgcaaactcatctcacgttttgctttggatttttgcatctgttc
tcaaccactcacagttgttgggtaaagcctatcccatgagcaacatgcta
ggctctggtctacaaatatagcagagtatcattagtaatcattttatcga
ctttttttcccagttgtgcttgctgtgtttgtgtttggttttatgattcc
cccattgccattttcctggccatgtacaacagcaagctaagttgccatct
gattttctattctccacagaaacttaattcatttgtgataaaaaatatca
gttctttataacttctccattattattgtgagttattatttgatcctgtc
cccacatatacactaaaattcaaaggttgaggaatagtactaaggagtat
gagtaatattgtatgaaacactgtgaagaggtagtttcccacttaataag
cagcctcaagagctagttcttgttttctgttttgttgtttttgtttgttt
ttcagagcagttcttctcttgttttcagttagttatttgaaatgacttac
tgaattatagaatcattctctactagtcactcaaaggaatggtgtagaat
taaaatgaaaaggtttcatacttgatccagaacacattttgggttgtagt
gtttgcttcttcattacctgtaaactgtgtaatagcaaaggctcaggtaa
cacctaatactggacattaaggtaactgagtaagaaggacactacttaca
ttctgaaatcagctccagattgatggacatagaattctgctgctggccat
cccaagacatttctacaacatgcctttaaagaaacacactcttaggtttg
agtcaaatattatttgttatttgatttttcaccacctaattattaataaa
agatgagttatttccattcagtttcctggccctctgggcctcttttctgc
agctggcaggatgggagtgtatggggcatctttaggacatgccaaaaatt
gttgatggggtgaaataccaggcaatgcaggtgaccttactgtaatgtat
aacagtggattttaacctgaaaaaaacacctc
gaattcagtctggcagttgctcagaaaattgaacatagtactacctgagg
acccagctataccactcctgggaatacagccaaaagacgctccaacatat
aacaaggacacatgctccacaatattcatagaagccttatttataatagc
cagaacctggaaataatccttgctgcttttcaagagagacttcagagagt
tgttaaaatgcaactctggtggcctactggttagggttggtggattagaa
aattacaaaaaaaatttttttggtaaactgcctttattaaaggttttctt
ttgggggggtcatattggggtctttggtttgtttgattttactttctttt
tattggttattttatttatttacatttcaaatattaccccccattcccag
tttcctctcttcaaactccctttatatcccccatccccccctgcttctat
atcagtgctccccccacactcaccaactcccacctcaccaccctatcatt
cccttatgctggggcaccaagcctccacatgaccaagggcatctcattcc
cttgataccagataaggccatcctctgctacatatgcagcttgagccatg
ggtccctccatgtgtactctttggttggtggtgtagtccctgggagctct
ggggtggggtctgtttaattgatattgctgtttcttcctatggggttgaa
aatcccttcagtttcctcagtccttcctctaactcctccattggggtcca
ttttgaaatcagttatctgacccaaccctctgttgtttacctgtataaga
aaaatttctggcatttctgtgaatgtgtaggtaaaaccctactttttttt
tatcaaaaagtcttcagtcaaaggtgatatccagaagatccgacaaccgc
tgaagagtcagatcagtatttgcacccaccatgtacagagctgttgatcc
atgtggtgacttaggaaagctgagagctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_19175246_19176333
seq2: B6Ng01-045A07.b_48_1129

seq1  GAATTCCGCAAACTCATCTCACGTTTTGCTTTGGATTTTTGCATCTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCGCAAACTCATCTCACGTTTTGCTTTGGATTTTTGCATCTGTTC  50

seq1  TCAACCACTCACAGTTGTTGGGTAAAGCCTATCCCATGAGCAACATGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACTCACAGTTGTTGGGTAAAGCCTATCCCATGAGCAACATGCTA  100

seq1  GGCTCTGGTCTACAAATATAGCAGAGTATCATTAGTAATCATTTTATCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGGTCTACAAATATAGCAGAGTATCATTAGTAATCATTTTATCGA  150

seq1  CTTTTTTTCCCAGTTGTGCTTGCTGTGTTTGTGTTTGGTTTTATGATTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCCCAGTTGTGCTTGCTGTGTTTGTGTTTGGTTTTATGATTCC  200

seq1  CCCATTGCCATTTTCCTGGCCATGTACAACAGCAAGCTAAGTTGCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGCCATTTTCCTGGCCATGTACAACAGCAAGCTAAGTTGCCATCT  250

seq1  GATTTTCTATTCTCCACAGAAACTTAATTCATTTGTGATAAAAAATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTCTATTCTCCACAGAAACTTAATTCATTTGTGATAAAAAATATCA  300

seq1  GTTCTTTATAACTTCTCCATTATTATTGTGAGTTATTATTTGATCCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTATAACTTCTCCATTATTATTGTGAGTTATTATTTGATCCTGTC  350

seq1  CCCACATATACACTAAAATTCAAAGGTTGAGGAATAGTACTAAGGAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATATACACTAAAATTCAAAGGTTGAGGAATAGTACTAAGGAGTAT  400

seq1  GAGTAATATTGTATGAAACACTGTGAAGAGGTAGTTTCCCACTTAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATATTGTATGAAACACTGTGAAGAGGTAGTTTCCCACTTAATAAG  450

seq1  CAGCCTCAAGAGCTAGTTCTTGTTTTCTGTTTTGTTGTTTTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCAAGAGCTAGTTCTTGTTTTCTGTTTTGTTGTTTTTGTTTGTTT  500

seq1  TTCAGAGCAGTTCTTCTCTTGTTTTCAGTTAGTTATTTGAAATGACTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGCAGTTCTTCTCTTGTTTTCAGTTAGTTATTTGAAATGACTTAC  550

seq1  TGAATTATAGAATCATTCTCTACTAGTCACTCAAAGGAATGGTGTAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTATAGAATCATTCTCTACTAGTCACTCAAAGGAATGGTGTAGAAT  600

seq1  TAAAATGAAAAGGTTTCATACTTGATCCAGAACACATTTTGGGTTGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAAAGGTTTCATACTTGATCCAGAACACATTTTGGGTTGTAGT  650

seq1  GTTTGCTTCTTCATTACCTGTAAACTGTGTAATAGCAAAGGCTCAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCTTCTTCATTACCTGTAAACTGTGTAATAGCAAAGGCTCAGGTAA  700

seq1  CACCTAATACTGGACATTAAGGTAACTGAGTAAGAAGGACACTACTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAATACTGGACATTAAGGTAACTGAGTAAGAAGGACACTACTTACA  750

seq1  TTCTGAAATCAGCTCCAGATTGATGGACATAGAATTCTGCTGCTGGCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAATCAGCTCCAGATTGATGGACATAGAATTCTGCTGCTGGCCAT  800

seq1  CCCAAGACATTTCTACAACATGCCTTTAAAGAAACACACTCTTAGGTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGACATTTCTACAACATGCCTTTAAAGAAACACACTCTTAGGTTTG  850

seq1  AGTCAAATATTATTTGTTATTTGATTTTTCACCACCTAATTATTAATAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAATATTATTTGTTATTTGATTTTTCACCACCTAATTATTAATAAA  900

seq1  AGATGAGTTATTTCCATTCAGTTTCCTGGCCCTCTGGCCCTCTTTTCTGC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATGAGTTATTTCCATTCAGTTTCCTGGCCCTCTGGGCCTCTTTTCTGC  950

seq1  AGCTGGCAGGTATGGGAGTGTATGGGGCATCTTTAGGACATGCCAGAGAT  1000
      |||||||||| |||||||||||||||||||||||||||||||||| | ||
seq2  AGCTGGCAGG-ATGGGAGTGTATGGGGCATCTTTAGGACATGCCAAAAAT  999

seq1  TGTGGATGGGGGAAGATACCAGGACAATGCAGGTGACCTTAGCTGAGATG  1050
      ||| |||||||  | |||||||| ||||||||||||||||| |||  |||
seq2  TGTTGATGGGGTGAAATACCAGG-CAATGCAGGTGACCTTA-CTGTAATG  1047

seq1  TATAGCAGTGGATTTGTGGAACCTGAAAAGACCACCTC  1088
      |||| ||||||||||    |||||||||| | ||||||
seq2  TATAACAGTGGATTT---TAACCTGAAAAAAACACCTC  1082

seq1: chr6_19219869_19220865
seq2: B6Ng01-045A07.g_70_1050 (reverse)

seq1  CTCAGCTTCTTCCAGCTTTTCCCTAAGTCAACCACATGGATCAGCAGCTT  50
      |||||| |||  |||||||  |||||||| ||||||||||||| |||| |
seq2  CTCAGC-TCT--CAGCTTT--CCTAAGTC-ACCACATGGATCAACAGC-T  43

seq1  CTGTCCATTGGTTGGGTGCAAATAACTGTATCTGACTCTTTCAGCTGCTT  100
      |||| |||  | ||||||||||| |||| ||||||||| |||||| | ||
seq2  CTGTACAT--GGTGGGTGCAAAT-ACTG-ATCTGACTC-TTCAGC-GGTT  87

seq1  GTCGGATCTTTCTGGATTATCACCTTTGACTGAAGACTTTCTGATAAAAA  150
      |||||||| ||||||| ||||||||||||||||||||||| |||| ||||
seq2  GTCGGATC-TTCTGGA-TATCACCTTTGACTGAAGACTTTTTGAT-AAAA  134

seq1  AAAAAGTAGGGTTTTAACCTACACATTCACAGAAATGCCAGAAATTTTTC  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGGGTTTT-ACCTACACATTCACAGAAATGCCAGAAATTTTTC  183

seq1  TTATACAGGTAAACAACAGAGGGTTGGGTCAGATAACTGATTTCAAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAGGTAAACAACAGAGGGTTGGGTCAGATAACTGATTTCAAAATG  233

seq1  GACCCCAATGGAGGAGTTAGAGGAAGGACTGAGGAAACTGAAGGGATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAATGGAGGAGTTAGAGGAAGGACTGAGGAAACTGAAGGGATTTT  283

seq1  CAACCCCATAGGAAG-AACAGCAATATCAATTAAACAGACCCCACCCCAG  349
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CAACCCCATAGGAAGAAACAGCAATATCAATTAAACAGACCCCACCCCAG  333

seq1  AGCTCCCAGGGACTACACCACCAACCAAAGAGTACACATGGAGGGACCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCAGGGACTACACCACCAACCAAAGAGTACACATGGAGGGACCCA  383

seq1  TGGCTCAAGCTGCATATGTAGCAGAGGATGGCCTTATCTGGTATCAAGGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAAGCTGCATATGTAGCAGAGGATGGCCTTATCTGGTATCAAGGG  433

seq1  AATGAGATGCCCTTGGTCATGTGGAGGCTTGGTGCCCCAGCATAAGGGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGCCCTTGGTCATGTGGAGGCTTGGTGCCCCAGCATAAGGGAA  483

seq1  TGATAGGGTGGTGAGGTGGGAGTTGGTGAGTGTGGGGGGAGCACTGATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGGTGGTGAGGTGGGAGTTGGTGAGTGTGGGGGGAGCACTGATAT  533

seq1  AGAAGCAGGGGGGGATGGGGGATATAAAGGGAGTTTGAAGAGAGGAAACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGGGGGGATGGGGGATATAAAGGGAGTTTGAAGAGAGGAAACT  583

seq1  GGGAATGGGGGGTAATATTTGAAATGTAAATAAATAAAATAACCAATAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGGGGGTAATATTTGAAATGTAAATAAATAAAATAACCAATAAA  633

seq1  AAGAAAGTAAAATCAAACAAACCAAAGACCCCAATATGACCCCCCCAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAAATCAAACAAACCAAAGACCCCAATATGACCCCCCCAAAA  683

seq1  GAAAACCTTTAATAAAGGCAGTTTACCAAAAAAATTTTTTTTGTAATTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCTTTAATAAAGGCAGTTTACCAAAAAAATTTTTTTTGTAATTTT  733

seq1  CTAATCCACCAACCCTAACCAGTAGGCCACCAGAGTTGCATTTTAACAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCACCAACCCTAACCAGTAGGCCACCAGAGTTGCATTTTAACAAC  783

seq1  TCTCTGAAGTCTCTCTTGAAAAGCAGCAAGGATTATTTCCAGGTTCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAGTCTCTCTTGAAAAGCAGCAAGGATTATTTCCAGGTTCTGGC  833

seq1  TATTATAAATAAGGCTTCTATGAATATTGTGGAGCATGTGTCCTTGTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAAATAAGGCTTCTATGAATATTGTGGAGCATGTGTCCTTGTTAT  883

seq1  ATGTTGGAGCGTCTTTTGGCTGTATTCCCAGGAGTGGTATAGCTGGGTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGAGCGTCTTTTGGCTGTATTCCCAGGAGTGGTATAGCTGGGTCC  933

seq1  TCAGGTAGTACTATGTTCAATTTTCTGAGCAACTGCCAGACTGAATTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGTACTATGTTCAATTTTCTGAGCAACTGCCAGACTGAATTC  981