BAC Information

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BAC

Clone NameB6Ng01-050B17
Chromosome6 (Build37)
Map Location 62,023,937 - 62,142,031
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneLOC100041764, LOC100042694
Downstream geneGA_x5J8B7W6GG0-4757855-4757501, LOC667099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B17.bB6Ng01-050B17.g
ACCDH874158DH874159
length9411,076
definitionDH874158|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B17, 5' end.DH874159|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,023,937 - 62,024,666)(62,140,922 - 62,142,031)
sequence
gaattcccatgttgttaccagacactgctgaaggtatagcaaagacattt
ggaaatttaaaagtggatctaaaacatggccaaacttatacaacttcact
cagacttaaaaagaagaggaaacaagtctaggttaaagtacaaaattagt
ttagattattcaatactaaaatttatataatttccagttttgttactata
cgattaacactgaaaaagtttaaagtggtaaaagcaaattggctggatat
tgaattaactcaaacaaatcagtagctttcccttatacaaatgataaaca
ggctgagaaagaaattaggcaaatgacacccttcacaatagccacaaata
atataaattatcttggtgtaactataaccaagcaagtgaaaggtgtggat
gtagaaacacttcaagtccctgaagaaagaaattgagaagaccttagaag
atgagaagatctcccaaggtaatggattggtagaattaacaaagtaaaca
ttgccatctcaccaaaagaaatctacagattcaatacaatgcccatgaaa
atcccaaaacaattattcacaggcatggaaagagcaattctcaacttcat
atgggaaaacaaaaatcccaggatagcaaaaagtattctcaacaataaag
gaacttctggagaaataaccatccctgaccttaagctgtattactgaaaa
atattaataaaaaaagaaaaacaaaacaaaaattcccaaagaacccaaaa
ctcatgatactagtatagagacagatagtttgatcaatggaatagagttg
aagacccttaaattagctcacacagctatggatacctgaacattgacaaa
gaggcaaaacatacattagataaagatagcatcttcaaaatgtgtgtaaa
ctctggtctgcatgtagaagaaagcaactgatcatattgtc
gaattctctggagtgagcatgttgttctaaactgagtataaaaaggccag
agcttcggttccctaaaaatctgatcccaacagaggaaaccatgtcattt
cttgtgttcttgttttcctgtaacttactttcatggtccattgttccttt
ccagtataaagaacacagcagcaagaattacatgcctcagaccttagctg
agaatgaattagtgtcttgaaaaactgaatgagagttaagtaaatgaaag
caaggataccaaaaagaattttagattagtatttaaataaagtgcaacta
gaagaaatgctcatctgagacatgtacagctatggtacactgtaaataat
aatgtaacctgcaagtaataagcataaaaactcacagcaaaggcaaattt
atgattagtagcacagcatgcagaggcttaaacaaagaacttaaagagtc
ttgggagttttagtggcaggtctcttctctaacaggtgcaaagacatggc
attaggttagattcctagcatcaaaaaaaaaaaaaaaaaaaaagaaattc
acaaggaatggtaaaagacaaagtgagacagaaaagacaagctcagagca
aagcaagctataatgcaatactcacatttccttttgaaatcttatctagg
aaattaaaataactatgccgagtctttaccaaagcaactggacaaaatct
aaggacacatgggcgaaataatcagataggaaacactatgaaaaaaaaag
ataaggatataagaatcttaaatcttattctcagcagcacaaagagcaat
gtgcttcgaatacaagaccctgtagagagatatgaaagtgttttggatgg
acccatgatgtgagtaaaaaaaaaataaataaaccctaaatataaaataa
agtactcagtatgtagatggtactactaaaggggtccccttcactcactg
tgtgtgagtttacgagcaagagatatgagagcagccagagtatctcaagc
tgaagtagtaaagtataacatgattactcatgagcttttctgtttcttgc
tactagaactcacttgcaaggcgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_62023937_62024666
seq2: B6Ng01-050B17.b_42_771

seq1  GAATTCCCATGTTGTTACCAGACACTGCTGAAGGTATAGCAAAGACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATGTTGTTACCAGACACTGCTGAAGGTATAGCAAAGACATTT  50

seq1  GGAAATTTAAAAGTGGATCTAAAACATGGCCAAACTTATACAACTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTAAAAGTGGATCTAAAACATGGCCAAACTTATACAACTTCACT  100

seq1  CAGACTTAAAAAGAAGAGGAAACAAGTCTAGGTTAAAGTACAAAATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTAAAAAGAAGAGGAAACAAGTCTAGGTTAAAGTACAAAATTAGT  150

seq1  TTAGATTATTCAATACTAAAATTTATATAATTTCCAGTTTTGTTACTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTATTCAATACTAAAATTTATATAATTTCCAGTTTTGTTACTATA  200

seq1  CGATTAACACTGAAAAAGTTTAAAGTGGTAAAAGCAAATTGGCTGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAACACTGAAAAAGTTTAAAGTGGTAAAAGCAAATTGGCTGGATAT  250

seq1  TGAATTAACTCAAACAAATCAGTAGCTTTCCCTTATACAAATGATAAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAACTCAAACAAATCAGTAGCTTTCCCTTATACAAATGATAAACA  300

seq1  GGCTGAGAAAGAAATTAGGCAAATGACACCCTTCACAATAGCCACAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAAAGAAATTAGGCAAATGACACCCTTCACAATAGCCACAAATA  350

seq1  ATATAAATTATCTTGGTGTAACTATAACCAAGCAAGTGAAAGGTGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATTATCTTGGTGTAACTATAACCAAGCAAGTGAAAGGTGTGGAT  400

seq1  GTAGAAACACTTCAAGTCCCTGAAGAAAGAAATTGAGAAGACCTTAGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACACTTCAAGTCCCTGAAGAAAGAAATTGAGAAGACCTTAGAAG  450

seq1  ATGAGAAGATCTCCCAAGGTAATGGATTGGTAGAATTAACAAAGTAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGATCTCCCAAGGTAATGGATTGGTAGAATTAACAAAGTAAACA  500

seq1  TTGCCATCTCACCAAAAGAAATCTACAGATTCAATACAATGCCCATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCTCACCAAAAGAAATCTACAGATTCAATACAATGCCCATGAAA  550

seq1  ATCCCAAAACAATTATTCACAGGCATGGAAAGAGCAATTCTCAACTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAAACAATTATTCACAGGCATGGAAAGAGCAATTCTCAACTTCAT  600

seq1  ATGGGAAAACAAAAATCCCAGGATAGCAAAAAGTATTCTCAACAATAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAAAACAAAAATCCCAGGATAGCAAAAAGTATTCTCAACAATAAAG  650

seq1  GAACTTCTGGAGAAATAACCATCCCTGACCTTAAGCTGTATTACTGAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTCTGGAGAAATAACCATCCCTGACCTTAAGCTGTATTACTGAAAA  700

seq1  ATATTAATAAAAAAAGAAAAACAAAACAAA  730
      ||||||||||||||||||||||||||||||
seq2  ATATTAATAAAAAAAGAAAAACAAAACAAA  730

seq1: chr6_62140922_62142031
seq2: B6Ng01-050B17.g_66_1141 (reverse)

seq1  TTTCTGCCTTGGCCAGAGTGAGTGTTGCTGTAGTAGGCAAGGAAACAGAA  50
      |||| ||||||  || |||||||     | ||||| |||| |||||||||
seq2  TTTC-GCCTTG--CA-AGTGAGT-----TCTAGTA-GCAA-GAAACAGAA  39

seq1  AAGCCTTCATGATGTATTCATGTTATTACTTTACTACTTTCAAGCTTTGA  100
      ||||  |||||| ||| |||||||| |||||||||||||   ||| ||||
seq2  AAGC--TCATGA-GTAATCATGTTA-TACTTTACTACTT--CAGC-TTGA  82

seq1  GATACTTCTGTGCTGCTCTTCATAATCTCTTTGCTCCCTTAAACTCACAC  150
      ||||| |||| ||||||| |||| ||||| |||||  | |||||||||||
seq2  GATAC-TCTG-GCTGCTC-TCAT-ATCTC-TTGCT--CGTAAACTCACAC  125

seq1  ACAGTGAGTGAAGGGGACCCCTTTAGTAGTAACCATCCTACAATTACTGA  200
      |||||||||||||||||||||||||||||| ||||| |||||  ||||||
seq2  ACAGTGAGTGAAGGGGACCCCTTTAGTAGT-ACCAT-CTACA--TACTGA  171

seq1  GTACTTTATTTTATATTTTAAGGGTTTATTTTATTTTTTTTTTTACTCAC  250
      ||||||||||||||||||  |||||||||||   ||||||||||||||||
seq2  GTACTTTATTTTATATTT--AGGGTTTATTT--ATTTTTTTTTTACTCAC  217

seq1  ATCATGGGTCCATCCAAAACACTTTTCATATCTCTCTACAGGGTCTTGTA  300
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCATGGGTCCATCCAAAACAC-TTTCATATCTCTCTACAGGGTCTTGTA  266

seq1  TTCGAAGCACATTGCTCTTTGTGCTGCTGAGAATAAGATTTAAGATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAAGCACATTGCTCTTTGTGCTGCTGAGAATAAGATTTAAGATTCTT  316

seq1  ATATCCTTATCTTTTTTTTTCATAGTGTTTCCTATCTGATTATTTCGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTATCTTTTTTTTTCATAGTGTTTCCTATCTGATTATTTCGCCC  366

seq1  ATGTGTCCTTAGATTTTGTCCAGTTGCTTTGGTAAAGACTCGGCATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCTTAGATTTTGTCCAGTTGCTTTGGTAAAGACTCGGCATAGTT  416

seq1  ATTTTAATTTCCTAGATAAGATTTCAAAAGGAAATGTGAGTATTGCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTCCTAGATAAGATTTCAAAAGGAAATGTGAGTATTGCATTA  466

seq1  TAGCTTGCTTTGCTCTGAGCTTGTCTTTTCTGTCTCACTTTGTCTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTGCTTTGCTCTGAGCTTGTCTTTTCTGTCTCACTTTGTCTTTTAC  516

seq1  CATTCCTTGTGAATTTCTTTTTTTTTTTTTTTTTTTTTGATGCTAGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTGTGAATTTCTTTTTTTTTTTTTTTTTTTTTGATGCTAGGAAT  566

seq1  CTAACCTAATGCCATGTCTTTGCACCTGTTAGAGAAGAGACCTGCCACTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTAATGCCATGTCTTTGCACCTGTTAGAGAAGAGACCTGCCACTA  616

seq1  AAACTCCCAAGACTCTTTAAGTTCTTTGTTTAAGCCTCTGCATGCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCCAAGACTCTTTAAGTTCTTTGTTTAAGCCTCTGCATGCTGTGC  666

seq1  TACTAATCATAAATTTGCCTTTGCTGTGAGTTTTTATGCTTATTACTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATCATAAATTTGCCTTTGCTGTGAGTTTTTATGCTTATTACTTGC  716

seq1  AGGTTACATTATTATTTACAGTGTACCATAGCTGTACATGTCTCAGATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACATTATTATTTACAGTGTACCATAGCTGTACATGTCTCAGATGA  766

seq1  GCATTTCTTCTAGTTGCACTTTATTTAAATACTAATCTAAAATTCTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTTCTAGTTGCACTTTATTTAAATACTAATCTAAAATTCTTTTT  816

seq1  GGTATCCTTGCTTTCATTTACTTAACTCTCATTCAGTTTTTCAAGACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTTGCTTTCATTTACTTAACTCTCATTCAGTTTTTCAAGACACT  866

seq1  AATTCATTCTCAGCTAAGGTCTGAGGCATGTAATTCTTGCTGCTGTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCTCAGCTAAGGTCTGAGGCATGTAATTCTTGCTGCTGTGTTC  916

seq1  TTTATACTGGAAAGGAACAATGGACCATGAAAGTAAGTTACAGGAAAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGGAAAGGAACAATGGACCATGAAAGTAAGTTACAGGAAAACA  966

seq1  AGAACACAAGAAATGACATGGTTTCCTCTGTTGGGATCAGATTTTTAGGG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACACAAGAAATGACATGGTTTCCTCTGTTGGGATCAGATTTTTAGGG  1016

seq1  AACCGAAGCTCTGGCCTTTTTATACTCAGTTTAGAACAACATGCTCACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAAGCTCTGGCCTTTTTATACTCAGTTTAGAACAACATGCTCACTC  1066

seq1  CAGAGAATTC  1110
      ||||||||||
seq2  CAGAGAATTC  1076