BAC Information

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BAC

Clone NameB6Ng01-051G17
Chromosome6 (Build37)
Map Location 104,235,744 - 104,372,093
singlet/doubletdoublet
Overlap genenone
Upstream geneChl1, LOC666141, LOC100043345
Downstream geneCntn6, LOC384470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051G17.bB6Ng01-051G17.g
ACCDH875065DH875066
length9301,122
definitionDH875065|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G17, 5' end.DH875066|Mus musculus domesticus DNA, BAC clone: B6Ng01-051G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,235,744 - 104,236,686)(104,370,966 - 104,372,093)
sequence
gaattctttggatctccatagaaattatgtaaaaataactaaaataaaga
gaaagaagaaaatagtattaagacttccatatacatggttattattacag
gcttttgaacaatagtgttaaaagtatgaaatatttaaaactacaaagct
atgcaaatgttcattaaagtactaaaagtaggattgctgtattaatttaa
ataaaaatatattttaaaataaaagttgtatttaaataaggagtgtaata
aacatttgaataaatttagacctttattattgaagtttgaatttaggtga
acaccctttattttatcttaagatgccaaatgtaaattataaaaaaatca
aattacttaagctataaaatatcacaagttaatgagaggttcaacttgta
tacagttgtgatagaattagtggattggtgtactggggactgaaaggcaa
agaaagttggatatttcaggaaagagctaagaagattttgggatctatgg
gacaaatgcttgataatttactagtgtggtcccataaagaaacagggtga
ttttgaggcactacacagcattgtgatgccaggaacattctaggttgcca
agacatcgactctgtttataaaataccataaaaagaaagatacaaagaaa
gaaaggggaaaaaggaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaaggaaggaaggaaggaaggaaggaaggaaggaaggaagga
aggaaagaaagagagagagaaaactcagttgattttgtcacttgtaaata
atattaaaatatgcttactttggcatattttgatcaacgtcttttacttg
aaatgataggtcataaatggcattcagattctgatatttagttttttttc
aaattaacggataaggattcctgacaataa
gaattcagaatccattcaagcaacatgaatgataaatagaaggagtgaat
cttctagttgggcaccagctttatttcaattctatgatatgttagtattt
taactagcagtaggacctaaccataattgtgtagaacgataaattgcatt
gtcaatagtctatcattcataatcttttacagaaatgttgataacaatat
tattgataatgaacaaaacagggaaaactgtaatgagtgtttggaaacaa
gtggaaatatggtgtatgatagtgactggaatgttggtatccctcctctt
tgttttcgatttacagacatggcagagaatattcagcataaagaacaaaa
taccatactgtaagtaaatctgaaaacatgtattcttggggaaagaatgc
agacatatagggaacatatccaattttacctatatgaagtttacagaata
gacaaacttgtaaagacataagttgatacctagcagactggtgtagtaga
tagattgcagaacactgctgaggagatattgaacttttactctatagaac
gtagaatgaaaagacagagaaattagtgataataaagatgggttttcctc
cagctgggtggttgcataatacaatgagtgcatcaaaaattttaattgta
tattttaaattgtgaattacagaatttgtgtgatatagctcaattaaaga
acataaaatgggtaaagatcaatgatctaaagagtgattgtgagcaaaac
cctttaactcttagtacatgcatgcaaacagttgtttctgaggttttgaa
ccacaacacataaataaagatataagtgacagacgacaggatccatttcc
tgaataagtaataaatcatgaatcttgtttaatgccagggactgtgttag
ccttgtcttatatcaactgtgtagtaacacaaattttctatagaggcagt
ggatataattctacatcattacttctttcaggattctggagccatcgatg
ctcccaagcacttttagtggtcgaggggtgcacatatgtcgttcagttgc
cttgtcctcatttgcatatactgagtttcaaggagcacgcaatgtacttt
gtcaactttataatcaagattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_104235744_104236686
seq2: B6Ng01-051G17.b_41_970

seq1  GAATTCTTTGGATCTCCATAGAAATTATGTAAAAATAACTAAAATAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGATCTCCATAGAAATTATGTAAAAATAACTAAAATAAAGA  50

seq1  GAAAGAAGAAAATAGTATTAAGACTTCCATATACATGGTTATTATTACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAGAAAATAGTATTAAGACTTCCATATACATGGTTATTATTACAG  100

seq1  GCTTTTGAACAATAGTGTTAAAAGTATGAAATATTTAAAACTACAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGAACAATAGTGTTAAAAGTATGAAATATTTAAAACTACAAAGCT  150

seq1  ATGCAAATGTTCATTAAAGTACTAAAAGTAGGATTGCTGTATTAATTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGTTCATTAAAGTACTAAAAGTAGGATTGCTGTATTAATTTAA  200

seq1  ATAAAAATATATTTTAAAATAAAAGTTGTATTTAAATAAGGAGTGTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATATATTTTAAAATAAAAGTTGTATTTAAATAAGGAGTGTAATA  250

seq1  AACATTTGAATAAATTTAGACCTTTATTATTGAAGTTTGAATTTAGGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGAATAAATTTAGACCTTTATTATTGAAGTTTGAATTTAGGTGA  300

seq1  ACACCCTTTATTTTATCTTAAGATGCCAAATGTAAATTATAAAAAAATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTTATTTTATCTTAAGATGCCAAATGTAAATTATAAAAAAATCA  350

seq1  AATTACTTAAGCTATAAAATATCACAAGTTAATGAGAGGTTCAACTTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTTAAGCTATAAAATATCACAAGTTAATGAGAGGTTCAACTTGTA  400

seq1  TACAGTTGTGATAGAATTAGTGGATTGGTGTACTGGGGACTGAAAGGCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGTGATAGAATTAGTGGATTGGTGTACTGGGGACTGAAAGGCAA  450

seq1  AGAAAGTTGGATATTTCAGGAAAGAGCTAAGAAGATTTTGGGATCTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTTGGATATTTCAGGAAAGAGCTAAGAAGATTTTGGGATCTATGG  500

seq1  GACAAATGCTTGATAATTTACTAGTGTGGTCCCATAAAGAAACAGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAATGCTTGATAATTTACTAGTGTGGTCCCATAAAGAAACAGGGTGA  550

seq1  TTTTGAGGCACTACACAGCATTGTGATGCCAGGAACATTCTAGGTTGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGGCACTACACAGCATTGTGATGCCAGGAACATTCTAGGTTGCCA  600

seq1  AGACATCGACTCTGTTTATAAAATACCATAAAAAGAAAGATACAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCGACTCTGTTTATAAAATACCATAAAAAGAAAGATACAAAGAAA  650

seq1  GAAAGGGGAAAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGAAAAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  700

seq1  AAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGA  750

seq1  AGG-AAGAAAGAGAGAGAGAAAACTCAGTTGATTTTGTTCACTTGTAAAT  799
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGAAAGAAAGAGAGAGAGAAAACTCAGTTGATTTTG-TCACTTGTAAAT  799

seq1  AATATTAAAATTATGCTTACTTTGGCATATTTTGGATCAACGTCTTTTAA  849
      |||||||||| |||||||||||||||||||||| |||||||||||||| |
seq2  AATATTAAAA-TATGCTTACTTTGGCATATTTT-GATCAACGTCTTTT-A  846

seq1  CTTGAAATGATTAGGTCATAAAATAGGCATTCATGATATCTGAGTATTTT  899
      |||||||||| |||||||||||   |||||||| ||| ||||| || |||
seq2  CTTGAAATGA-TAGGTCATAAA--TGGCATTCA-GAT-TCTGA-TA-TTT  889

seq1  AGTTTATTTTCTCAAATTAACGGATAAGGGATACCTGACAAAAA  943
      ||||  |||| |||||||||||||||| |||| |||||||| ||
seq2  AGTT--TTTTTTCAAATTAACGGATAA-GGATTCCTGACAATAA  930

seq1: chr6_104370966_104372093
seq2: B6Ng01-051G17.g_67_1188 (reverse)

seq1  AAATCTTGATGTATAATGTTGAC-AAGTACATTGCGGTGCTTCCTTGAAA  49
      |||||||||| ||||| |||||| ||||||||||| |||| |||||||||
seq2  AAATCTTGAT-TATAAAGTTGACAAAGTACATTGC-GTGC-TCCTTGAAA  47

seq1  CTCAGTATATGCAAATTGAGGACAAGGCAACCTGAACGACATATGTGCAC  99
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  CTCAGTATATGCAAA-TGAGGACAAGGCAA-CTGAACGACATATGTGCAC  95

seq1  CCCTCGACACCTAAAAGGTTGCTTGGGAGCATCGATGGCT-CAGAATCCT  148
      ||||||||  |||||||  ||||||||||||||||||||| |||||||||
seq2  CCCTCGACCACTAAAAG--TGCTTGGGAGCATCGATGGCTCCAGAATCCT  143

seq1  GATAGAAAGTTATTGAATGTAGAATTATATCCACTGCCTTCTATAG-ATA  197
      || || |||| ||   |||||||||||||||||||||| ||||||| | |
seq2  GAAAG-AAGTAAT--GATGTAGAATTATATCCACTGCC-TCTATAGAAAA  189

seq1  TTTGTGTTACTACACAGTTGATATAAGAC-AGGCTAACACAGTCCCTGGC  246
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTTGTGTTACTACACAGTTGATATAAGACAAGGCTAACACAGTCCCTGGC  239

seq1  ATTAAACAAGATTCATGATTTATTACTTATTCAGGAAATGGATCCTGTCG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACAAGATTCATGATTTATTACTTATTCAGGAAATGGATCCTGTCG  289

seq1  TCTGTCACTTATATCTTTATTTATGTGTTGTGGTTCAAAACCTCAG-AAC  345
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTGTCACTTATATCTTTATTTATGTGTTGTGGTTCAAAACCTCAGAAAC  339

seq1  AACTGTTTGCATGCATGTACTAAGAGTTAAAGGGTTTTGCTCACAATCAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTTGCATGCATGTACTAAGAGTTAAAGGGTTTTGCTCACAATCAC  389

seq1  TCTTTAGATCATTGATCTTTACCCATTTTATGTTCTTTAATTGAGCTATA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGATCATTGATCTTTACCCATTTTATGTTCTTTAATTGAGCTATA  439

seq1  TCACACAAATTCTGTAATTCACAATTTAAAATATACAATTAAAATTTTTG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAATTCTGTAATTCACAATTTAAAATATACAATTAAAATTTTTG  489

seq1  ATGCACTCATTGTATTATGCAACCACCCAGCTGGAGGAAAACCCATCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTCATTGTATTATGCAACCACCCAGCTGGAGGAAAACCCATCTTT  539

seq1  ATTATCACTAATTTCTCTGTCTTTTCATTCTACGTTCTATAGAGTAAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCACTAATTTCTCTGTCTTTTCATTCTACGTTCTATAGAGTAAAAG  589

seq1  TTCAATATCTCCTCAGCAGTGTTCTGCAATCTATCTACTACACCAGTCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATCTCCTCAGCAGTGTTCTGCAATCTATCTACTACACCAGTCTG  639

seq1  CTAGGTATCAACTTATGTCTTTACAAGTTTGTCTATTCTGTAAACTTCAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTATCAACTTATGTCTTTACAAGTTTGTCTATTCTGTAAACTTCAT  689

seq1  ATAGGTAAAATTGGATATGTTCCCTATATGTCTGCATTCTTTCCCCAAGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTAAAATTGGATATGTTCCCTATATGTCTGCATTCTTTCCCCAAGA  739

seq1  ATACATGTTTTCAGATTTACTTACAGTATGGTATTTTGTTCTTTATGCTG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGTTTTCAGATTTACTTACAGTATGGTATTTTGTTCTTTATGCTG  789

seq1  AATATTCTCTGCCATGTCTGTAAATCAAAAACAAAGAGGAGGGATACCAA  845
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AATATTCTCTGCCATGTCTGTAAATCGAAAACAAAGAGGAGGGATACCAA  839

seq1  CATTCCAGTCACTATCATACACCATATTTCCACTTGTTTCCAAACACTCA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTCACTATCATACACCATATTTCCACTTGTTTCCAAACACTCA  889

seq1  TTACAGTTTTCCCTGTTTTGTTCATTATCAATAATATTGTTATCAACATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTTCCCTGTTTTGTTCATTATCAATAATATTGTTATCAACATT  939

seq1  TCTGTAAAAGATTATGAATGATAGACTATTGACAATGCAATTTATCGTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAAGATTATGAATGATAGACTATTGACAATGCAATTTATCGTTC  989

seq1  TACACAATTATGGTTAGGTCCTACTGCTAGTTAAAATACTAACATATCAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAATTATGGTTAGGTCCTACTGCTAGTTAAAATACTAACATATCAT  1039

seq1  AGAATTGAAATAAAGCTGGTGCCCAACTAGAAGATTCACTCCTTCTATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTGAAATAAAGCTGGTGCCCAACTAGAAGATTCACTCCTTCTATTT  1089

seq1  ATCATTCATGTTGCTTGAATGGATTCTGAATTC  1128
      |||||||||||||||||||||||||||||||||
seq2  ATCATTCATGTTGCTTGAATGGATTCTGAATTC  1122