BAC Information

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BAC

Clone NameB6Ng01-052D17
Chromosome6 (Build37)
Map Location 89,018,704 - 89,169,101
singlet/doubletdoublet
Overlap gene4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491, LOC665547, EG624537, Gm839
Upstream geneRpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175
Downstream gene4930512J16Rik, Plxna1, Chchd6, Txnrd3, V1r-ps1, V1rb7, V1rb9, V1r-ps2, V1r-ps3, V1ra6, V1ra5, V1rb4, V1r-ps4, V1ra2, V1rb8, V1ra4, V1ra3, V1rb2, V1rb1, V1ra1, LOC625050, V1ra7, V1ra8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D17.bB6Ng01-052D17.g
ACCDH875645DH875646
length1,084968
definitionDH875645|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D17, 5' end.DH875646|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,168,027 - 89,169,101)(89,018,704 - 89,019,673)
sequence
gaattcaggattttctgtctgtctgaccttgacacctgcagatcagacac
tgtttccccagtgctgggattaaaagtgggttctttcatcctgccttgct
aggcaattttcctttgaagctcaggctttttgactgggtttgtggtgggg
gaagcctaacagctgtcctctagttgctcatgctttggtagtcatagcta
aaccacagcccggaaggtactgcccatggaccccctgttgttaggtccta
agtgccccttctcccaaatgacagttctggagacaatgtcataaacagaa
gaacgatcaccaggtcaacagaaggactgttactggggaatagaggccta
aagctgggcctctgtttacccggagcctcctttaacctgtcccaaagatc
aagtaccttggtcaagggcatcatttctggtcaacccaaacagcctgtat
cagctcaaagataaccactctgctgggatagaaattgaaggcttttccac
caaatggccttttttcaccctggccttggccttagcactgtgatccccac
taacactttctttatacccatagggtggttcacttgggcggtttcactgt
gccctcgcttatgattacactaataactgttgttccaggcatcagcttgt
gttctttttttttttttaatttctttcttttttttatgattcgggggctg
tgaaatagtcccctgtctgtcctggaactctctttgcagaccacacaggt
ttccaaatcacagagatctgcctatctctctgcctctcaaatggtatgat
taaaggcgtgtgccaccatgcctgccactttgtatctttttgatccaatt
agagctgctcttttctagggtggggtaatgagagtgtgccacttcccttc
ctgggtgtggatgttcattgtatctgctcctgcagcacaaggttgagatc
ataatattatcatattatggcttcaagttggtaaatttgaagccttgttt
ttctttttccctgtggacattgaccttttaatttattttaattgaactat
ttatggcattgggggaggtaggtatttcccatcc
gaattctctacctggtgaattgtttggcttttctataatctgagagagag
agagagagagagagagagagagagagagagagagagagagaggtgtgtag
ctttatgtgggtgatcacagctgctttgattcaagatgtgtgggtccccc
tcctgcaggttgaatgtgaccattagtatctttctaggacccacttggcc
agcccatggttttagctagcccatggttttagctagcccatggttttgag
gataaatgcaaaagagactttgctgtgcaggatactgctatctcatacac
tggtgtctctgacacagtctgtggagacaggtagaccgaacattattggc
caaggactcaacctgacagcacagccttggctggcatagaaactttgtgg
ctctctcatagccactcagagccctggagcaaagtgtccttgagatatac
accctgcaagtgtggggtagaggtaggctgtggcttatttttctcattta
tccaagaagctatttttgctcattaaaacctagttactttgctgtctcta
gccaggatcctggagtgctcgcttggttaatttaagcaagcagagatttg
acggagtaatttcattgtccttggggattggccggctgatgccaagcctc
actcttcccgttggaatggagttaattttcgctgaaattgcttctttagc
agacaaacacattccccatcattgaaggcttatgttttctgctgctctat
tattccttaatttacacacccaggcagtgcagaatccatactcaacagaa
gagacagcccctcctagtaccgctgggtgcagggcagtgaaggagcacaa
ggcacttcactctgccccaaggacccaggtattacctagtgctgaggcgg
attgtctgacatcttacatactcaaaacttccccatgccctgcttgggac
aaatgcatcaaggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_89168027_89169101
seq2: B6Ng01-052D17.b_47_1130 (reverse)

seq1  GGAT-GGAAATACCTACCTCACCATATGCCATAAATAGTTACAATTAAAA  49
      |||| ||||||||||||||| ||  ||||||||||||||| |||||||||
seq2  GGATGGGAAATACCTACCTCCCCCAATGCCATAAATAGTT-CAATTAAAA  49

seq1  TAAA-TAAAAAGTCAATGT-CACAGTGAAAAAGAAAACAAAGGCTTCAAA  97
      |||| ||||| |||||||| ||||| |||||||||||  |||||||||||
seq2  TAAATTAAAAGGTCAATGTCCACAGGGAAAAAGAAAAACAAGGCTTCAAA  99

seq1  -TTACCAACTTGAAGCATAAAATATGAT-ATATTATGATCTCAACC-TGT  144
       |||||||||||||||  | |||||||| ||||||||||||||||| |||
seq2  TTTACCAACTTGAAGC-CATAATATGATAATATTATGATCTCAACCTTGT  148

seq1  GCTGCAGGAGCAGATAC-ATGAACATCCACACCCAGGAAGGGAAGTGGCA  193
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GCTGCAGGAGCAGATACAATGAACATCCACACCCAGGAAGGGAAGTGGCA  198

seq1  CACTCTCAT--ACCCACCCTAG-AAAGAGCAGCTCTAATTGGATC-AAAA  239
      |||||||||   |||||||||| |||||||||||||||||||||| ||||
seq2  CACTCTCATTACCCCACCCTAGAAAAGAGCAGCTCTAATTGGATCAAAAA  248

seq1  GATACAAAGTGGCAGGCATGGTGGCACACGCCTTTAATCATACCATTTGA  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAGTGGCAGGCATGGTGGCACACGCCTTTAATCATACCATTTGA  298

seq1  GAGGCAGAGAGATAGGCAGATCTCTGTGATTTGGAAACCTGTGTGGTCTG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGAGATAGGCAGATCTCTGTGATTTGGAAACCTGTGTGGTCTG  348

seq1  CAAAGAGAGTTCCAGGACAGACAGGGGACTATTTCACAGCCCCCGAATCA  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAGTTCCAGGACAGACAGGGGACTATTTCACAGCCCCCGAATCA  398

seq1  TAAAAAAAAGAAAGAAATTAAAAAAAAAAAAAGAACACAAGCTGATGCCT  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAGAAAGAAATTAAAAAAAAAAAAAGAACACAAGCTGATGCCT  448

seq1  GGAACAACAGTTATTAGTGTAATCATAAGCGAGGGCACAGTGAAACCGCC  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAACAGTTATTAGTGTAATCATAAGCGAGGGCACAGTGAAACCGCC  498

seq1  CAAGTGAACCACCCTATGGGTATAAAGAAAGTGTTAGTGGGGATCACAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAACCACCCTATGGGTATAAAGAAAGTGTTAGTGGGGATCACAGT  548

seq1  GCTAAGGCCAAGGCCAGGGTGAAAAAAGGCCATTTGGTGGAAAAGCCTTC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGCCAAGGCCAGGGTGAAAAAAGGCCATTTGGTGGAAAAGCCTTC  598

seq1  AATTTCTATCCCAGCAGAGTGGTTATCTTTGAGCTGATACAGGCTGTTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTATCCCAGCAGAGTGGTTATCTTTGAGCTGATACAGGCTGTTTG  648

seq1  GGTTGACCAGAAATGATGCCCTTGACCAAGGTACTTGATCTTTGGGACAG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGACCAGAAATGATGCCCTTGACCAAGGTACTTGATCTTTGGGACAG  698

seq1  GTTAAAGGAGGCTCCGGGTAAACAGAGGCCCAGCTTTAGGCCTCTATTCC  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGGAGGCTCCGGGTAAACAGAGGCCCAGCTTTAGGCCTCTATTCC  748

seq1  CCAGTAACAGTCCTTCTGTTGACCTGGTGATCGTTCTTCTGTTTATGACA  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACAGTCCTTCTGTTGACCTGGTGATCGTTCTTCTGTTTATGACA  798

seq1  TTGTCTCCAGAACTGTCATTTGGGAGAAGGGGCACTTAGGACCTAACAAC  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCCAGAACTGTCATTTGGGAGAAGGGGCACTTAGGACCTAACAAC  848

seq1  AGGGGGTCCATGGGCAGTACCTTCCGGGCTGTGGTTTAGCTATGACTACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGTCCATGGGCAGTACCTTCCGGGCTGTGGTTTAGCTATGACTACC  898

seq1  AAAGCATGAGCAACTAGAGGACAGCTGTTAGGCTTCCCCCACCACAAACC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATGAGCAACTAGAGGACAGCTGTTAGGCTTCCCCCACCACAAACC  948

seq1  CAGTCAAAAAGCCTGAGCTTCAAAGGAAAATTGCCTAGCAAGGCAGGATG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAAAAAGCCTGAGCTTCAAAGGAAAATTGCCTAGCAAGGCAGGATG  998

seq1  AAAGAACCCACTTTTAATCCCAGCACTGGGGAAACAGTGTCTGATCTGCA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCCACTTTTAATCCCAGCACTGGGGAAACAGTGTCTGATCTGCA  1048

seq1  GGTGTCAAGGTCAGACAGACAGAAAATCCTGAATTC  1075
      ||||||||||||||||||||||||||||||||||||
seq2  GGTGTCAAGGTCAGACAGACAGAAAATCCTGAATTC  1084

seq1: chr6_89018704_89019673
seq2: B6Ng01-052D17.g_70_1037

seq1  GAATTCTCTACCTGGTGAATTGTTTGGCTTTTCTATAATCTGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACCTGGTGAATTGTTTGGCTTTTCTATAATCTGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTGTAG  100

seq1  CTTTATGTGGGTGATCACAGCTGCTTTGATTCAAGATGTGTGGGTCCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGTGGGTGATCACAGCTGCTTTGATTCAAGATGTGTGGGTCCCCC  150

seq1  TCCTGCAGGTTGAATGTGACCATTAGTATCTTTCTAGGACCCACTTGGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAGGTTGAATGTGACCATTAGTATCTTTCTAGGACCCACTTGGCC  200

seq1  AGCCCATGGTTTTAGCTAGCCCATGGTTTTAGCTAGCCCATGGTTTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGGTTTTAGCTAGCCCATGGTTTTAGCTAGCCCATGGTTTTGAG  250

seq1  GATAAATGCAAAAGAGACTTTGCTGTGCAGGATACTGCTATCTCATACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATGCAAAAGAGACTTTGCTGTGCAGGATACTGCTATCTCATACAC  300

seq1  TGGTGTCTCTGACACAGTCTGTGGAGACAGGTAGACCGAACATTATTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTCTGACACAGTCTGTGGAGACAGGTAGACCGAACATTATTGGC  350

seq1  CAAGGACTCAACCTGACAGCACAGCCTTGGCTGGCATAGAAACTTTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACTCAACCTGACAGCACAGCCTTGGCTGGCATAGAAACTTTGTGG  400

seq1  CTCTCTCATAGCCACTCAGAGCCCTGGAGCAAAGTGTCCTTGAGATATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCATAGCCACTCAGAGCCCTGGAGCAAAGTGTCCTTGAGATATAC  450

seq1  ACCCTGCAAGTGTGGGGTAGAGGTAGGCTGTGGCTTATTTTTCTCATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAAGTGTGGGGTAGAGGTAGGCTGTGGCTTATTTTTCTCATTTA  500

seq1  TCCAAGAAGCTATTTTTGCTCATTAAAACCTAGTTAC-TTGCTGTCTCTA  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCAAGAAGCTATTTTTGCTCATTAAAACCTAGTTACTTTGCTGTCTCTA  550

seq1  GCCAGGATCCTGGAGTGCTCGCTTGGTTAATTTAAGCAAGCAGAGATTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGATCCTGGAGTGCTCGCTTGGTTAATTTAAGCAAGCAGAGATTTG  600

seq1  ACGGAGTAATTTCATTGTCCTTGGGGATTGGCCGGCTGATGCCAAGCCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGTAATTTCATTGTCCTTGGGGATTGGCCGGCTGATGCCAAGCCTC  650

seq1  ACTCTTCCCGTTGGAATGGAGTTAATTTTCGCTGAAATTGCTTC-TTAGC  698
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ACTCTTCCCGTTGGAATGGAGTTAATTTTCGCTGAAATTGCTTCTTTAGC  700

seq1  AGACAAACACATTCCCCATCATTGAAGGCTTATG-TTTCTGCTGCTCTAT  747
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AGACAAACACATTCCCCATCATTGAAGGCTTATGTTTTCTGCTGCTCTAT  750

seq1  TATTCCTTAATTTACACACCCAGGCAGTGCAGAATCCATACTCAACAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTTAATTTACACACCCAGGCAGTGCAGAATCCATACTCAACAGAA  800

seq1  GAGACAGCCCCCTCCCAGTACCGCTGGGTGCAGGGCAGTGAAGGAGCACC  847
      ||||||| ||||||| ||||||||||||||||||||||||||||||||| 
seq2  GAGACAG-CCCCTCCTAGTACCGCTGGGTGCAGGGCAGTGAAGGAGCACA  849

seq1  AGGCAC-TCACTCTGCCCCAAGGACCCAGGTAGTGACACTAGTGCTGAGG  896
      |||||| ||||||||||||||||||||||||| | || ||||||||||||
seq2  AGGCACTTCACTCTGCCCCAAGGACCCAGGTA-TTAC-CTAGTGCTGAGG  897

seq1  CGGATTGTCTGACAACTCTACATACTCAAAACTTCCCCTATGCCCTGCTG  946
      |||||||||||||| || |||||||||||||||||||| |||||||||| 
seq2  CGGATTGTCTGACATCT-TACATACTCAAAACTTCCCC-ATGCCCTGCTT  945

seq1  GGAGCAAAATGCAGCAAGGGGGGG  970
      || |  ||||||| ||||||||||
seq2  GG-GACAAATGCATCAAGGGGGGG  968