BAC Information

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BAC

Clone NameB6Ng01-053F19
Chromosome6 (Build37)
Map Location 127,451,255 - 127,591,324
singlet/doubletdoublet
Overlap geneEfcab4b
Upstream geneKcna5, Kcna1, Kcna6, LOC667463, Ndufa9, Akap3, Dyrk4, Rad51ap1, D6Wsu163e, LOC667473, LOC624256, Fgf6, Fgf23, 9630033F20Rik, Ccnd2, Tpi-rs11, EG243642, LOC100043578, EG640703, LOC100043848, Parp11
Downstream genePrmt8, Tspan11, Tspan9, LOC100043853, LOC667560, Tead4, LOC652986, Tulp3, 5930416I19Rik, Foxm1, Nrip2, Itfg2, Fkbp4, EG667598, Pzp, LOC384494, EG667610, BC048546, Klrb1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F19.bB6Ng01-053F19.g
ACCDH876433DH876434
length840712
definitionDH876433|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F19, 5' end.DH876434|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,590,486 - 127,591,324)(127,451,255 - 127,451,981)
sequence
gaattcccctgccatccacgtatttgccgatcacagagccagatctttgc
ttcctgcttgccttggaagcagctgtgtttgccttggccgccttatcttt
ctgcagaaacacaaaatgccctgagatccactcccgtgcatccatctcga
cttctgcttgagcagaagtgagggaaagctctagataggactctaaatga
gagaagcaggccaggttttcctctttgatcacccactctccagtttttcc
acccctggcccactccagttaggactccatctccttcccagaaatccgct
caaaggagggaatacaaagtggagagcctagggtttcttgtgcctttttt
cacaggaacttgcaagagatcagaagagaagtcaaagatacgtattacct
gagaaaatatgctggtattttaggtcgtactcttccttgtggctccaatc
tccctttcccatcaaagcccatgaggtgttgagctagggactccccccaa
ccagaggagcagttattccagagttctgtccaccactccctcattagccc
cgaacctctgcagccccctgtggaagcaggctgggtatggatgaactgct
caaatagctgtaactcagaactggaggggagaagggctcagaaccccgtt
tgctaagactctgggacagagctcttccaggagacactaggaatcagatc
acaggaagagtgttgcttgaatcagccactccatgcttccagaggaccta
taatgaggtgggaggggggactgttggatcccagcatccctgaagggcat
gggttttaatgattctatgcagatttttattattattcta
gaattctacctggaagtaactccagtaaagtaggcaagaatcagagggtg
tgtagtcactagttcctatgccttgcttggctttccacagagagtcctgt
gtctggattttcctcaggacagaaggtcccgcctgctgaggaccacactg
agttaaagtggattccttcctggatctgtagtctctttcctcgtgtgttt
caatgctcagacccaagtccgcctttgcttcctgttactgtgataataca
ttgctcaaaagagactcagggaggaaagggtttatttcatcttacaagtc
tctggccatactccatcacagagaagtcaggctaggaactccaggcaggc
aggcaggcaggcaggtaggcaggcaggtaggcaggcaggtaggcaggcag
gaacctggaggcaggaattgaagcagaggccttgaaggagtgctgcttac
tggcttgttccaaggttagaccacctacccgtgggtggcaatacccccaa
tgggctggttcctaatccagctggttccatttatcaagaaaatgtcccac
tgacttgcctacaggccaaagtaatggaagcaactttccaaatggcgttt
cctcttccaggtgaaccagtttgtgtgttagtaaaacaaaccaaacccct
aaccacatgaggcagaggccaatgggctatcttgccactctgttacggct
tctaaagaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_127590486_127591324
seq2: B6Ng01-053F19.b_40_879 (reverse)

seq1  TAGAATAATAATTAAATATCTGCCTAGAATCATT-AAAGCCATGCCC-TC  48
      ||||||||||| |||| |||||| |||||||||| ||| |||||||| ||
seq2  TAGAATAATAA-TAAAAATCTGCATAGAATCATTAAAACCCATGCCCTTC  49

seq1  AGGGGTGCTGGGGTCCAACAGTCCCCCCTCCCACCTCATTATAGGTCCTC  98
      |||| ||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGGGATGCTGGGATCCAACAGTCCCCCCTCCCACCTCATTATAGGTCCTC  99

seq1  TGGAAGCATGGAGTGGCTGATTCAAGCAACACTCTTCCTGTGATCTGATT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCATGGAGTGGCTGATTCAAGCAACACTCTTCCTGTGATCTGATT  149

seq1  CCTAGTGTCTCCTGGAAGAGCTCTGTCCCAGAGTCTTAGCAAACGGGGTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGTCTCCTGGAAGAGCTCTGTCCCAGAGTCTTAGCAAACGGGGTT  199

seq1  CTGAGCCCTTCTCCCCTCCAGTTCTGAGTTACAGCTATTTGAGCAGTTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCTTCTCCCCTCCAGTTCTGAGTTACAGCTATTTGAGCAGTTCA  249

seq1  TCCATACCCAGCCTGCTTCCACAGGGGGCTGCAGAGGTTCGGGGCTAATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACCCAGCCTGCTTCCACAGGGGGCTGCAGAGGTTCGGGGCTAATG  299

seq1  AGGGAGTGGTGGACAGAACTCTGGAATAACTGCTCCTCTGGTTGGGGGGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGTGGTGGACAGAACTCTGGAATAACTGCTCCTCTGGTTGGGGGGA  349

seq1  GTCCCTAGCTCAACACCTCATGGGCTTTGATGGGAAAGGGAGATTGGAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGCTCAACACCTCATGGGCTTTGATGGGAAAGGGAGATTGGAGC  399

seq1  CACAAGGAAGAGTACGACCTAAAATACCAGCATATTTTCTCAGGTAATAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGGAAGAGTACGACCTAAAATACCAGCATATTTTCTCAGGTAATAC  449

seq1  GTATCTTTGACTTCTCTTCTGATCTCTTGCAAGTTCCTGTGAAAAAAGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTTGACTTCTCTTCTGATCTCTTGCAAGTTCCTGTGAAAAAAGGC  499

seq1  ACAAGAAACCCTAGGCTCTCCACTTTGTATTCCCTCCTTTGAGCGGATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAACCCTAGGCTCTCCACTTTGTATTCCCTCCTTTGAGCGGATTT  549

seq1  CTGGGAAGGAGATGGAGTCCTAACTGGAGTGGGCCAGGGGTGGAAAAACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGGAGATGGAGTCCTAACTGGAGTGGGCCAGGGGTGGAAAAACT  599

seq1  GGAGAGTGGGTGATCAAAGAGGAAAACCTGGCCTGCTTCTCTCATTTAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGTGGGTGATCAAAGAGGAAAACCTGGCCTGCTTCTCTCATTTAGA  649

seq1  GTCCTATCTAGAGCTTTCCCTCACTTCTGCTCAAGCAGAAGTCGAGATGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTATCTAGAGCTTTCCCTCACTTCTGCTCAAGCAGAAGTCGAGATGG  699

seq1  ATGCACGGGAGTGGATCTCAGGGCATTTTGTGTTTCTGCAGAAAGATAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACGGGAGTGGATCTCAGGGCATTTTGTGTTTCTGCAGAAAGATAAG  749

seq1  GCGGCCAAGGCAAACACAGCTGCTTCCAAGGCAAGCAGGAAGCAAAGATC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCCAAGGCAAACACAGCTGCTTCCAAGGCAAGCAGGAAGCAAAGATC  799

seq1  TGGCTCTGTGATCGGCAAATACGTGGATGGCAGGGGAATTC  839
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTGTGATCGGCAAATACGTGGATGGCAGGGGAATTC  840

seq1: chr6_127451255_127451981
seq2: B6Ng01-053F19.g_67_778

seq1  GAATTCTACCTGGAAGTAACTCCAGTAAAGTAGGCAAGAATCAGAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTGGAAGTAACTCCAGTAAAGTAGGCAAGAATCAGAGGGTG  50

seq1  TGTAGTCACTAGTTCCTATGCCTTGCTTGGCTTTCCACAGAGAGTCCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCACTAGTTCCTATGCCTTGCTTGGCTTTCCACAGAGAGTCCTGT  100

seq1  GTCTGGATTTTCCTCAGGACAGAAGGTCCCGCCTGCTGAGGACCACACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGATTTTCCTCAGGACAGAAGGTCCCGCCTGCTGAGGACCACACTG  150

seq1  AGTTAAAGTGGATTCCTTCCTGGATCTGTAGTCTCTTTCCTCGTGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAGTGGATTCCTTCCTGGATCTGTAGTCTCTTTCCTCGTGTGTTT  200

seq1  CAATGCTCAGACCCAAGTCCGCCTTTGCTTCCTGTTACTGTGATAATACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTCAGACCCAAGTCCGCCTTTGCTTCCTGTTACTGTGATAATACA  250

seq1  TTGCTCAAAAGAGACTCAGGGAGGAAAGGGTTTATTTCATCTTACAAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAAGAGACTCAGGGAGGAAAGGGTTTATTTCATCTTACAAGTC  300

seq1  TCTGGCCATACTCCATCACAGAGAAGTCAGGCTAGGAACTCCAGGCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCATACTCCATCACAGAGAAGTCAGGCTAGGAACTCCAGGCAGGC  350

seq1  AGGCAGGCAGGCAGGTAGGCAGGCAGGTAGGCAGGCAGGTAGGCAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGGCAGGTAGGCAGGCAGGTAGGCAGGCAGGTAGGCAGGCAG  400

seq1  GAACCTGGAGGCAGGAATTGAAGCAGAGGCCTTGAAGGAGTGCTGCTTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGGAGGCAGGAATTGAAGCAGAGGCCTTGAAGGAGTGCTGCTTAC  450

seq1  TGGCTTGTTCCAAGGTTAGACCACCTACCCGTGGGTGGCAATACCCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTTCCAAGGTTAGACCACCTACCCGTGGGTGGCAATACCCCCAA  500

seq1  TGGGCTGGTTCCTAATCCAGCTGGTTCCATTTATCAAGAAAATGTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGTTCCTAATCCAGCTGGTTCCATTTATCAAGAAAATGTCCCAC  550

seq1  TGACTTGCCTACAGGCCAAAGTAATGGAAGCAACTTTCCAAATGGCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGCCTACAGGCCAAAGTAATGGAAGCAACTTTCCAAATGGCGTTT  600

seq1  CCTCTTCCCAGGTGACTCTAGTTTGTGTTGTTAGTAAAAACAAAGCCAAC  650
      |||||| ||||||||  | |||||||| ||||||| |||||||| |||| 
seq2  CCTCTT-CCAGGTGA-ACCAGTTTGTG-TGTTAGT-AAAACAAA-CCAA-  644

seq1  ACCCCTAACCAGCATGATGACAGAGGCCAATTGTGCTATCTTGCCTACTC  700
      ||||||||||| ||||| | |||||||||| || ||||||||||| ||||
seq2  ACCCCTAACCA-CATGA-GGCAGAGGCCAA-TGGGCTATCTTGCC-ACTC  690

seq1  TTGTTACAGGCTTCTCAAAAGAACCCT  727
       |||||| |||||||  |||| |||||
seq2  -TGTTAC-GGCTTCT--AAAG-ACCCT  712