BAC Information

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BAC

Clone NameB6Ng01-053J23
Chromosome6 (Build37)
Map Location 109,874,305 - 109,997,783
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053J23.bB6Ng01-053J23.g
ACCDH876619DH876620
length4381,136
definitionDH876619|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J23, 5' end.DH876620|Mus musculus domesticus DNA, BAC clone: B6Ng01-053J23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,997,340 - 109,997,783)(109,874,305 - 109,875,447)
sequence
attgaagaaagaagtcaattaaaacggacctcatattaaccatatttaaa
aatacctaccacatgtgtcttaaaataactactaaaatatgcttaggaaa
ttatatgtattatataaaaaatcacatttcattaaagaaatacaaaaagg
aagagatagaaaaaaaaaaccactaaagtgtaaaaattacctaaaatgtg
ggaaaaatctaggattatggagcatactggagaatatataaataaataag
atactgaatgtcaaataagttgaagagattatatattgaacaaggaaggg
ataaaagaacagtgactatgctgataatgctaagagttcattttgtagaa
aatgttattttagtttgacttacatatctctctctctctctctctctctc
tctctctctctctctctctctctctctctctctctctc
gaattccatacaggtaaaccaaatgttaacattaatttatatgacttatt
ttgagcatgcagcaaaattcctagccctaaataaagaatgaaagaaaagt
tatcaggaacagttaggtttatttgttccattatagattcctaagaaatt
agactcctctgttttctgttttaaagctgccaggaagtatttcctgagtt
tctcactaccccagtcaaaattagcatatgacaacacttgccagagtgac
ttgcttcctcagatctatgtttcatcaaagtctattattttctttctctg
aggaactgactctacgttacataaggtagataaggaaaaaataggtgatg
gttttacaagatttaaaattttagggaagtataatgatttattaagctcc
ttgatttgatagtcagtgtaatatacaaaatgattagttttcaaatctcc
atacacttggttcggaaaataagcttgggtattaccagattcaaagctgg
cttgttattgtttaaatttaatactttaggagtaaattagatattaaaat
atgtgataattctctgagaattagaaacaccataatttgcctggacctac
ccaaataaaagaagcatgttattactcatggccaaatatttttcttagca
aattaaaacaaccatgagattccatctcacaccagtcagaatggctaaga
tcaaaaattcaggtgacagcagatgctgatgtggagaaagaggaacattc
ctccattgttggtgagattgcaagtttgtacaaacactctggaaatcagt
ctggtggttcctcagaaaattggacatagtattatgggaggatcccgcaa
tacctctcctgagcatatatccagaagatgctccaaccagtaagaaggac
acatgcttcactatgtcatagcagccttacttatatagccagaagctgga
aagaactcagatgcccctcaatagaagatggataaagaaaattttggtac
atttacacaatggagtactactccagccattaaaagatgatttatgaaat
tcctaggcaattggatggaactggagggcatcatcctagtgaggtaacca
ttcacaaagaattccacacatatggactccctgata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109997340_109997783
seq2: B6Ng01-053J23.b_47_490 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGATATGTAAGTCAAACTAAAATAACATTTTCTACAAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGATATGTAAGTCAAACTAAAATAACATTTTCTACAAAATG  100

seq1  AACTCTTAGCATTATCAGCATAGTCACTGTTCTTTTATCCCTTCCTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTAGCATTATCAGCATAGTCACTGTTCTTTTATCCCTTCCTTGTT  150

seq1  CAATATATAATCTCTTCAACTTATTTGACATTCAGTATCTTATTTATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATAATCTCTTCAACTTATTTGACATTCAGTATCTTATTTATTTA  200

seq1  TATATTCTCCAGTATGCTCCATAATCCTAGATTTTTCCCACATTTTAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCCAGTATGCTCCATAATCCTAGATTTTTCCCACATTTTAGGT  250

seq1  AATTTTTACACTTTAGTGGTTTTTTTTTTCTATCTCTTCCTTTTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTACACTTTAGTGGTTTTTTTTTTCTATCTCTTCCTTTTTGTATT  300

seq1  TCTTTAATGAAATGTGATTTTTTATATAATACATATAATTTCCTAAGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATGAAATGTGATTTTTTATATAATACATATAATTTCCTAAGCAT  350

seq1  ATTTTAGTAGTTATTTTAAGACACATGTGGTAGGTATTTTTAAATATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGTAGTTATTTTAAGACACATGTGGTAGGTATTTTTAAATATGGT  400

seq1  TAATATGAGGTCCGTTTTAATTGACTTCTTTCTTCAATGAATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGAGGTCCGTTTTAATTGACTTCTTTCTTCAATGAATTC  444

seq1: chr6_109874305_109875447
seq2: B6Ng01-053J23.g_68_1203

seq1  GAATTCCATACAGGTAAACCAAATGTTAACATTAATTTATATGACTTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACAGGTAAACCAAATGTTAACATTAATTTATATGACTTATT  50

seq1  TTGAGCATGCAGCAAAATTCCTAGCCCTAAATAAAGAATGAAAGAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCATGCAGCAAAATTCCTAGCCCTAAATAAAGAATGAAAGAAAAGT  100

seq1  TATCAGGAACAGTTAGGTTTATTTGTTCCATTATAGATTCCTAAGAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGAACAGTTAGGTTTATTTGTTCCATTATAGATTCCTAAGAAATT  150

seq1  AGACTCCTCTGTTTTCTGTTTTAAAGCTGCCAGGAAGTATTTCCTGAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCCTCTGTTTTCTGTTTTAAAGCTGCCAGGAAGTATTTCCTGAGTT  200

seq1  TCTCACTACCCCAGTCAAAATTAGCATATGACAACACTTGCCAGAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTACCCCAGTCAAAATTAGCATATGACAACACTTGCCAGAGTGAC  250

seq1  TTGCTTCCTCAGATCTATGTTTCATCAAAGTCTATTATTTTCTTTCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCTCAGATCTATGTTTCATCAAAGTCTATTATTTTCTTTCTCTG  300

seq1  AGGAACTGACTCTACGTTACATAAGGTAGATAAGGAAAAAATAGGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGACTCTACGTTACATAAGGTAGATAAGGAAAAAATAGGTGATG  350

seq1  GTTTTACAAGATTTAAAATTTTAGGGAAGTATAATGATTTATTAAGCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACAAGATTTAAAATTTTAGGGAAGTATAATGATTTATTAAGCTCC  400

seq1  TTGATTTGATAGTCAGTGTAATATACAAAATGATTAGTTTTCAAATCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGATAGTCAGTGTAATATACAAAATGATTAGTTTTCAAATCTCC  450

seq1  ATACACTTGGTTCGGAAAATAAGCTTGGGTATTACCAGATTCAAAGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTTGGTTCGGAAAATAAGCTTGGGTATTACCAGATTCAAAGCTGG  500

seq1  CTTGTTATTGTTTAAATTTAATACTTTAGGAGTAAATTAGATATTAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTATTGTTTAAATTTAATACTTTAGGAGTAAATTAGATATTAAAAT  550

seq1  ATGTGATAATTCTCTGAGAATTAGAAACACCATAATTTGCCTGGACCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAATTCTCTGAGAATTAGAAACACCATAATTTGCCTGGACCTAC  600

seq1  CCAAATAAAAGAAGCATGTTATTACTCATGGCCAAATATTTTTCTTAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAAAAGAAGCATGTTATTACTCATGGCCAAATATTTTTCTTAGCA  650

seq1  AATTAAAACAACCATGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAACAACCATGAGATTCCATCTCACACCAGTCAGAATGGCTAAGA  700

seq1  TCAAAAATTCAGGTGACAGCAGATGCTGATGTGGAGAAAGAGGAACATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATTCAGGTGACAGCAGATGCTGATGTGGAGAAAGAGGAACATTC  750

seq1  CTCCATTGTTGGTGAGATTGCAAGTTTGTACAAACACTCTGGAAATCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGTTGGTGAGATTGCAAGTTTGTACAAACACTCTGGAAATCAGT  800

seq1  CTGGTGGTTCCTCAGAAAATTGGACATAGTATTATGGGAGGATCCCGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTTCCTCAGAAAATTGGACATAGTATTATGGGAGGATCCCGCAA  850

seq1  TACCTCTCCTGAGCATATATCCAGAAGATGCTCCAACCAGTAAGAAGGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCCTGAGCATATATCCAGAAGATGCTCCAACCAGTAAGAAGGAC  900

seq1  ACATGCTTCACTATGTTCATAGCAGCCTTACTTATAATAGCCAGAAGCTG  950
      ||||||||||||||| ||||||||||||||||||| ||||||||||||||
seq2  ACATGCTTCACTATG-TCATAGCAGCCTTACTTAT-ATAGCCAGAAGCTG  948

seq1  GAAAGAACTCAGATGCCCCTCAATAGAAGAATGGATACAGAAAA-TGTGG  999
      ||||||||||||||||||||||||||||| ||||||| |||||| | |||
seq2  GAAAGAACTCAGATGCCCCTCAATAGAAG-ATGGATAAAGAAAATTTTGG  997

seq1  TACATTTACACAATGGAGTACTACT-CAGCTATTAAAAAGAATGAATTTA  1048
      ||||||||||||||||||||||||| |||| |||||||   ||| |||||
seq2  TACATTTACACAATGGAGTACTACTCCAGCCATTAAAA--GATG-ATTTA  1044

seq1  TGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG  1098
      |||||||||||||||| |||||||| ||||||||||||||||| ||||||
seq2  TGAAATTCCTAGGCAATTGGATGGAACTGGAGGGCATCATCCT-AGTGAG  1093

seq1  GTAACCCAATCACAAAAGAATTCACACA-ATATGTACTCACTGATA  1143
      |||| ||| |||| ||||||||| |||| ||||| |||| ||||||
seq2  GTAA-CCATTCAC-AAAGAATTC-CACACATATGGACTCCCTGATA  1136