BAC Information

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BAC

Clone NameB6Ng01-054A03
Chromosome6 (Build37)
Map Location 114,877,960 - 115,015,882
singlet/doubletdoublet
Overlap gene1500001M20Rik, LOC100043420
Upstream geneAtp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
Downstream geneSyn2, Timp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054A03.bB6Ng01-054A03.g
ACCDH876881DH876882
length1,1301,055
definitionDH876881|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A03, 5' end.DH876882|Mus musculus domesticus DNA, BAC clone: B6Ng01-054A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,877,960 - 114,879,103)(115,014,812 - 115,015,882)
sequence
gaattccatctacaagactggtgtagtttgggacctgggaggcacctcag
agaataaaggtgcttgctgccaaatctgacaacctgagttcaacccctgg
gaccccatgtggtggaaggacagacagcaccaactctggtgagccgtggg
taaatatgatagaagtcaaagtttctagagttggttgttgtaatccacaa
ctgtcaccccggcacataagagcctgagatagaaagagcagatgttttta
ggctagcctgggctacactgtaaccctgtttctaaaacacaaaggaagga
gaggtggttttcccacccactggaaccagtcaggagccttctaagccaag
cattgtccagtccccaattctatagccaggcccagggaaccccagacaga
tgaagtttggatttacaagtacacacctagacagttttaaaatgcttctc
ctagaacagtggttttcaaccttcccaatgatgcaatcctattaacggtt
tctcatgctgtggtgacccaagcataaaatgacttttgttgctacttcat
aactgttattttgctactgtgacgactattaatgtaaatattatctgtgt
ttctgatggtcttgggtgacccctgaactactggcctagtgagaagctcc
tggctgccggcccacccttacaggtgtagtgctcttgactaccactaggg
ggcactgcgagccaacctaagacaccacatcccccttacatgtaagcctt
cagtattcctttacatagaagggcctgtcatcttaggtaggcttcctagc
tcagaggcatctagaactgatgcaaaacacatacacacacacttacttcg
tctgggaattgggcttagcagctctcctgttgacctgtccctctcagaag
ctgttggtcccaggcagttggcggagaatttccagtctttttctggctgc
actaagtggggtcactgtctctttacagctgtacccctcagtattggcct
cctattcacacctcctgtctcctcttagatcactttcccagacctaacaa
caccaacacttgcactgtagtagccagctattttttgagaacaaactgga
cggaacctctagctattggtactgagggaa
gaattcacccatctggccgcagcaatctggcttcctagacaactgcagaa
ataaataaagccaaataggcgaatgataacaacaaccagtactatttatt
gaattccatatgctgagtactgctgagcagatatatgtatacctaaaact
agacagtattctctccccattcggcagggaagggaaattcattctttgag
agactgtttttcccccacaagaccctgaagtcgttttggtatagaggcag
atgaataaggtgggcgatggacatgaatcacagctgtatttatgtaaaat
gaagcggatgacttcagaataatgagaacaattttgtacgtgctttagaa
actcggtctgaggactgctgaagagaaagctctggaaaattttttgaaca
gtggcagccctccaaaagagtatttgtattttaggatctccccccacccc
cttccaaaaagcagcctttgtttgttttctggattacagaggctatttat
cattactgtagaaggtagaaaatagaaaaaataaaaacaaaaacattaaa
gctctgtctaaggtccaaggaaaacaattcttgtttccattgttgatatt
aaaattacgctgtgccgcgggtggtggtggtgctcgcctttaatcccagc
actccggaggcagaggcagggagatttctgagttcaaggccagcctggct
tacaaagtaagtccaggacagccagggctatacagagaaatcctgtctcg
aaaaaccaaaaagaaaaaaaaaaaaaaaaacacaaaacactgcatttcat
attttcttagttatatatttcttgtatatctctaactatttccttaaaac
aagcctcaaaaaatagaatgtctggctcaaaggctatatatgtttcaaag
ctttgaaatgcattaccagcatggctagagaagatcttaccaaattttaa
gtgagtgctttgattattataggcagacttgtaatatttgggagcatttt
ctgtggtggatgctgattgtgactttgccttctttttcataaatagtttg
tactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114877960_114879103
seq2: B6Ng01-054A03.b_46_1175

seq1  GAATTCCATCTACAAGACTGGTGTAGTTTGGGACCTGGGAGGCACCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTACAAGACTGGTGTAGTTTGGGACCTGGGAGGCACCTCAG  50

seq1  AGAATAAAGGTGCTTGCTGCCAAATCTGACAACCTGAGTTCAACCCCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAAGGTGCTTGCTGCCAAATCTGACAACCTGAGTTCAACCCCTGG  100

seq1  GACCCCATGTGGTGGAAGGACAGACAGCACCAACTCTGGTGAGCCGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCATGTGGTGGAAGGACAGACAGCACCAACTCTGGTGAGCCGTGGG  150

seq1  TAAATATGATAGAAGTCAAAGTTTCTAGAGTTGGTTGTTGTAATCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGATAGAAGTCAAAGTTTCTAGAGTTGGTTGTTGTAATCCACAA  200

seq1  CTGTCACCCCGGCACATAAGAGCCTGAGATAGAAAGAGCAGATGTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCCCGGCACATAAGAGCCTGAGATAGAAAGAGCAGATGTTTTTA  250

seq1  GGCTAGCCTGGGCTACACTGTAACCCTGTTTCTAAAACACAAAGGAAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTGGGCTACACTGTAACCCTGTTTCTAAAACACAAAGGAAGGA  300

seq1  GAGGTGGTTTTCCCACCCACTGGAACCAGTCAGGAGCCTTCTAAGCCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGTTTTCCCACCCACTGGAACCAGTCAGGAGCCTTCTAAGCCAAG  350

seq1  CATTGTCCAGTCCCCAATTCTATAGCCAGGCCCAGGGAACCCCAGACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTCCAGTCCCCAATTCTATAGCCAGGCCCAGGGAACCCCAGACAGA  400

seq1  TGAAGTTTGGATTTACAAGTACACACCTAGACAGTTTTAAAATGCTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTGGATTTACAAGTACACACCTAGACAGTTTTAAAATGCTTCTC  450

seq1  CTAGAACAGTGGTTTTCAACCTTCCCAATGATGCAATCCTATTAACGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACAGTGGTTTTCAACCTTCCCAATGATGCAATCCTATTAACGGTT  500

seq1  TCTCATGCTGTGGTGACCCAAGCATAAAATGACTTTTGTTGCTACTTCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTGTGGTGACCCAAGCATAAAATGACTTTTGTTGCTACTTCAT  550

seq1  AACTGTTATTTTGCTACTGTGACGACTATTAATGTAAATATTATCTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTATTTTGCTACTGTGACGACTATTAATGTAAATATTATCTGTGT  600

seq1  TTCTGATGGTCTTGGGTGACCCCTGAACTACTGGCCTAGTGAGAAGCTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGGTCTTGGGTGACCCCTGAACTACTGGCCTAGTGAGAAGCTCC  650

seq1  TGGCTGCCGGCCCACCCTTACAGGTGTAGTGCTCTTGACTACCACTAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCCGGCCCACCCTTACAGGTGTAGTGCTCTTGACTACCACTAGGG  700

seq1  GGCACTGCGAGCCAACCTAAGACACCACATCCCCCTTACATGTAAGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGCGAGCCAACCTAAGACACCACATCCCCCTTACATGTAAGCCTT  750

seq1  CAGTATTCCTTTACATAGAAGGGCCTGTCATCTTAGGTAGGCTTCCTAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTCCTTTACATAGAAGGGCCTGTCATCTTAGGTAGGCTTCCTAGC  800

seq1  TCAGAGGCATCTAGAACTGATGCAAAACACATACACACACACTTACTTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGCATCTAGAACTGATGCAAAACACATACACACACACTTACTTCG  850

seq1  TCTGGGAATTGGGCTTAGCAGGCTCTCCTGTTGACCTGTCCCTCCCAGAA  900
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  TCTGGGAATTGGGCTTAGCA-GCTCTCCTGTTGACCTGTCCCTCTCAGAA  899

seq1  GCTGTTGGTCCCAGGCAGTTGGCGGAGAATTTCCAGTC-TTTTCTGGCTG  949
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GCTGTTGGTCCCAGGCAGTTGGCGGAGAATTTCCAGTCTTTTTCTGGCTG  949

seq1  CACTAAGTGGGGTCACTGTCTCTTTACAGCTGTACCCCTCAAGTATTGGC  999
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CACTAAGTGGGGTCACTGTCTCTTTACAGCTGTACCCCTC-AGTATTGGC  998

seq1  CTCCTATTCACACCTCCTGTCTCTCTTTAGATCACTTTCCCCAGAACCTA  1049
      |||||||||||||||||||||||   |||||||||||| ||||| |||||
seq2  CTCCTATTCACACCTCCTGTCTCCTCTTAGATCACTTT-CCCAG-ACCTA  1046

seq1  ACAACAACAACACTTGGCACTGTTAGGTAGCCCAGCTATTTTCTGAGAAC  1099
      |||||| |||||||| |||||||   |||| ||||||||||| |||||||
seq2  ACAACACCAACACTT-GCACTGT--AGTAG-CCAGCTATTTTTTGAGAAC  1092

seq1  AAACTGGAACGGAGACCTCTAAGTCTAATCTGGGTACTGAGGGAA  1144
      ||||||| ||||| |||||||   |||   | |||||||||||||
seq2  AAACTGG-ACGGA-ACCTCTA--GCTA---TTGGTACTGAGGGAA  1130

seq1: chr6_115014812_115015882
seq2: B6Ng01-054A03.g_62_1116 (reverse)

seq1  AAGTACCAAAACTATTTAATGGAAAAAAGAAAGCAGAAGTCACAAATCAG  50
      ||||||  ||||||||| |||  |||||||| ||| ||||||| ||||||
seq2  AAGTAC--AAACTATTT-ATG--AAAAAGAAGGCA-AAGTCAC-AATCAG  43

seq1  CAATCCACCAACAAGAAAATGCTCCCAAATATTACAAGGTCTGGCTTATA  100
      | ||||||||   |||||||||||||||||||||||| |||| || ||||
seq2  C-ATCCACCA--CAGAAAATGCTCCCAAATATTACAA-GTCT-GCCTATA  88

seq1  ATTAATCAAAGCACTCACCTTAAAATTTGGTAAGATTCTTCTCTTAGCCA  150
      | ||||||||||||||| ||||||||||||||||| ||||||| ||||||
seq2  A-TAATCAAAGCACTCA-CTTAAAATTTGGTAAGA-TCTTCTC-TAGCCA  134

seq1  TGCTGGTAATGCATTTCAAAGCTTTGAAACATATATAGCCTTTGAGCCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTAATGCATTTCAAAGCTTTGAAACATATATAGCCTTTGAGCCAG  184

seq1  ACATTCTATTTTTTGAGGCTTGTTTTAAGGAAATAGTTAGAGATATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTATTTTTTGAGGCTTGTTTTAAGGAAATAGTTAGAGATATACAA  234

seq1  GAAATATATAACTAAGAAAATATGAAATGCAGTGTTTTGTGTTTTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATATAACTAAGAAAATATGAAATGCAGTGTTTTGTGTTTTTTTTT  284

seq1  TTTTTTTTCTTTTTGGTTTTTCGAGACAGGATTTCTCTGTATAGCCCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTTTGGTTTTTCGAGACAGGATTTCTCTGTATAGCCCTGG  334

seq1  CTGTCCTGGACTTACTTTGTAAGCCAGGCTGGCCTTGAACTCAGAAATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTGGACTTACTTTGTAAGCCAGGCTGGCCTTGAACTCAGAAATCT  384

seq1  CCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGAGCACCACCACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCTCTGCCTCCGGAGTGCTGGGATTAAAGGCGAGCACCACCACCA  434

seq1  CCCGCGGCACAGCGTAATTTTAATATCAACAATGGAAACAAGAATTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGGCACAGCGTAATTTTAATATCAACAATGGAAACAAGAATTGTTT  484

seq1  TCCTTGGACCTTAGACAGAGCTTTAATGTTTTTGTTTTTATTTTTTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGACCTTAGACAGAGCTTTAATGTTTTTGTTTTTATTTTTTCTAT  534

seq1  TTTCTACCTTCTACAGTAATGATAAATAGCCTCTGTAATCCAGAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACCTTCTACAGTAATGATAAATAGCCTCTGTAATCCAGAAAACAA  584

seq1  ACAAAGGCTGCTTTTTGGAAGGGGGTGGGGGGAGATCCTAAAATACAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGCTGCTTTTTGGAAGGGGGTGGGGGGAGATCCTAAAATACAAAT  634

seq1  ACTCTTTTGGAGGGCTGCCACTGTTCAAAAAATTTTCCAGAGCTTTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGGAGGGCTGCCACTGTTCAAAAAATTTTCCAGAGCTTTCTCT  684

seq1  TCAGCAGTCCTCAGACCGAGTTTCTAAAGCACGTACAAAATTGTTCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGTCCTCAGACCGAGTTTCTAAAGCACGTACAAAATTGTTCTCAT  734

seq1  TATTCTGAAGTCATCCGCTTCATTTTACATAAATACAGCTGTGATTCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAAGTCATCCGCTTCATTTTACATAAATACAGCTGTGATTCATG  784

seq1  TCCATCGCCCACCTTATTCATCTGCCTCTATACCAAAACGACTTCAGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCGCCCACCTTATTCATCTGCCTCTATACCAAAACGACTTCAGGGT  834

seq1  CTTGTGGGGGAAAAACAGTCTCTCAAAGAATGAATTTCCCTTCCCTGCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGGGGAAAAACAGTCTCTCAAAGAATGAATTTCCCTTCCCTGCCG  884

seq1  AATGGGGAGAGAATACTGTCTAGTTTTAGGTATACATATATCTGCTCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGAGAGAATACTGTCTAGTTTTAGGTATACATATATCTGCTCAGC  934

seq1  AGTACTCAGCATATGGAATTCAATAAATAGTACTGGTTGTTGTTATCATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGCATATGGAATTCAATAAATAGTACTGGTTGTTGTTATCATT  984

seq1  CGCCTATTTGGCTTTATTTATTTCTGCAGTTGTCTAGGAAGCCAGATTGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTATTTGGCTTTATTTATTTCTGCAGTTGTCTAGGAAGCCAGATTGC  1034

seq1  TGCGGCCAGATGGGTGAATTC  1071
      |||||||||||||||||||||
seq2  TGCGGCCAGATGGGTGAATTC  1055