BAC Information

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BAC

Clone NameB6Ng01-054H16
Chromosome6 (Build37)16 (Build37)
Map Location 69,242,298 - 69,243,12476,808,118 - 76,809,247
singlet/doubletsingletsinglet
Overlap geneIgk
Upstream geneIgkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541
Downstream geneGm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H16.bB6Ng01-054H16.g
ACCDH877211DH877212
length1,1881,117
definitionDH877211|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H16, 5' end.DH877212|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,242,298 - 69,243,124)(76,808,118 - 76,809,247)
sequence
gaattcagagtacaacatctgtcttgtccaaaagacagcattttaatcac
aataaaaagccactcaacagctttccccatatgttttttaaaaaaaaact
atcattatctatttagcatctatctataatctgtactcatacacaagttt
tcagaggttgagagaaaagacacaagcaagaggcaacactgagaactact
caaggagatcttagtggaagctttccagaaaaaatattgtgtgtgtgagg
agggcaacacacataagaactatctcttgcttatgaaagcaaaacacata
gtgcctttagacaaagaagagcttctatggccagcacccacagtgttgga
aaggagtaaccaagaaagacagggaggtaggaggtagggatgtgggtgcg
tgacagggtttttctgtatagctctggttgtcctgaaactaactctgtag
aacaggctggcctcaaactcagaaatccacctgcctctgcctcctgagtg
ctggcattaaaggtgtgtgccaccacacctgaccctgagctaaatattct
aataagttttgtttttaaatttgcttttccttaatcttactccctcattt
taattgttacaatattcaaattttttctacgacaaaattgaagtttctgg
tgccaagtattcacaattaaatgagtattcatactgacattcaactcatc
gttgtactttttcaccagacatatatgggctgagctacattcagaaatct
actgtcaaattttctggcacaacagaaagaaccaggtaaagagaaacagt
ctagatttgctgctcttgtgggctcttttacagttaacttgattttctca
taggcaagcgaagaatgtctacatagttgtgattttgtttcacatatgga
ttcagaaagagtatcttgtttttaactcatctaatagcagaacaggagaa
aacactggaacatacataaaagatcctttcagatggtcattatttagtgg
agaataaagtatagatgccagacaaagtacaaatccattgcatgtttatg
atatgaactgtaagggcattcaccaaactagtctacaagccggggaatga
ataagtccactgtgctactatgttcagtctagggtccttaggaccggata
tcactattcctactctcatataccgagttatgaaactc
gaattcactctacttctgcctcaaaacctctctcaactatttctctacac
atcatgaattgtctttgatagtttacaaaaagaactaagtcatccatttt
aaagaagtacaaacagccaagattaagggaatagccaggctagggtccca
ccaacataatttaatttaggggttctagagttccaaaaaccattctcctg
gattaggaaaacatttcaggaggatgtgatggactggcaacccttgcctg
agtaatttgtcttctcgtgccagccaactgcaataacatcagcttggagt
gataaggatacagctaaatttgctttaattaatgtcaaagtctcagagta
ataaatcaccattaattcttgagttcagtttttagaaatagcctcgcctc
atctttttggctgtcagtggaatttggctgggaaagtctcccacttgtgg
agactcatcatctctgttattatctttcttgttcttagtttctcaaggtg
agatttcattaatgtggcaagtccataacagcttcatcattctctttact
actgtcctaacaaaatcatggtgttgccagctctttgtgccgacttggac
ttgtcaccggaattactcactaatttttgtatgtttcttcacaatctgta
cgtacatttgcattaataagcttcttaagaaaagtatcattagagtttaa
gaggaaaaattctacatagtaggaaataacagtgattctttttaacccta
ccttccatattttgatagcactggtaggatactcaagaatgatgtcattt
ttttgttgctcgtctgtctatagtttaaaatacattttaggggttggaaa
agtgggctttatatgtgtgtgcatgtgcatgaatgtgtgcataagtgtgc
atgtgtgtggctgtgtgtgtatgtgtgtatatattatgtgtcaggttctt
atgtgtgaaatctcatctgcaagtctaaggtctaatctacagtctgtcat
tttttttcttctttatctgttggtttgaatctgcctcaaacaatgaggct
attaggcccgaccttcacattgagctacaatacagctgaattaattattt
tcttaggggagaggaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69242298_69243124
seq2: B6Ng01-054H16.b_443_1229

seq1  GACAGGGTTTTTCTGTATATTTCTGGCTGTCCTGGAACTCACTCTGTAGA  50
      |||||||||||||||||||  ||||| ||||||| |||| ||||||||||
seq2  GACAGGGTTTTTCTGTATAGCTCTGGTTGTCCTGAAACTAACTCTGTAGA  50

seq1  ACAGGCTGGCCTGGAACTCAGAAATCCACCTGCCACTGCCTCCTGAGTGC  100
      ||||||||||||  |||||||||||||||||||| |||||||||||||||
seq2  ACAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGC  100

seq1  TGGCATTAAAGGTGTTTGCCACCACACCTGACCCTGAGCTAAATATTCTA  150
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGGCATTAAAGGTGTGTGCCACCACACCTGACCCTGAGCTAAATATTCTA  150

seq1  ATGAGTTTCGTTTTTAAATTTG-TTTTCCTTAATCTTACTCCTTCTTTTT  199
      || ||||| ||||||||||||| ||||||||||||||||||| || ||||
seq2  ATAAGTTTTGTTTTTAAATTTGCTTTTCCTTAATCTTACTCCCTCATTTT  200

seq1  AATTGTTACAATATTCAAATTTTGGTCTACAACAAAATTGAAGTTTCTGG  249
      |||||||||||||||||||||||  ||||| |||||||||||||||||||
seq2  AATTGTTACAATATTCAAATTTT-TTCTACGACAAAATTGAAGTTTCTGG  249

seq1  TGCCGAGTATTCAGAATTAAATGAGTATTCATACTGACATTTTCTAACCC  299
      |||| |||||||| ||||||||||||||||||||||||||          
seq2  TGCCAAGTATTCACAATTAAATGAGTATTCATACTGACAT----------  289

seq1  TAAACTCATCATTGTACTTTTTCCCCAGACATATGTGGGCTGAGTTACAT  349
      | |||||||| |||||||||||| |||||||||| ||||||||| |||||
seq2  TCAACTCATCGTTGTACTTTTTCACCAGACATATATGGGCTGAGCTACAT  339

seq1  TCAGAAATCTACTGCTAAATTTTCTGGCACAACAGAAAGAACCAGGTAAA  399
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  TCAGAAATCTACTGTCAAATTTTCTGGCACAACAGAAAGAACCAGGTAAA  389

seq1  GAGAAACAGTCTAGATTTGCTGCTCTTGTGGGCTCTTTTATAGTTAACTT  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GAGAAACAGTCTAGATTTGCTGCTCTTGTGGGCTCTTTTACAGTTAACTT  439

seq1  GATTTTCTCATAGGCAAGCTAAGGATGTCTACATAGTTGTGATTTTGTTT  499
      ||||||||||||||||||| ||| ||||||||||||||||||||||||||
seq2  GATTTTCTCATAGGCAAGCGAAGAATGTCTACATAGTTGTGATTTTGTTT  489

seq1  CCACATATGGATTCAGAAAGAGTATCTTGGTTTCTAACTCATCTAATTAG  549
       ||||||||||||||||||||||||||| |||| |||||||||||| |||
seq2  -CACATATGGATTCAGAAAGAGTATCTT-GTTTTTAACTCATCTAA-TAG  536

seq1  CAGAACAAGAAGAAAACACTGGAACATACATAAAAGAATCCTTTCAGATG  599
      |||||| || |||||||||||||||||||||||||| |||||||||||||
seq2  CAGAAC-AGGAGAAAACACTGGAACATACATAAAAG-ATCCTTTCAGATG  584

seq1  GTCACTATTTTAGTGGTGAATAAAGGATAGATGCCAGGACAAAGTAACAA  649
      |||| || |||||||| |||||||| |||||||||| |||||||| ||||
seq2  GTCATTA-TTTAGTGGAGAATAAAGTATAGATGCCA-GACAAAGT-ACAA  631

seq1  ATCCATTGCATGTTAATGATATAGAACTGTAAGGGCAATTCACCAAAAAC  699
      |||||||||||||| ||||||| ||||||||||||| ||||||||||   
seq2  ATCCATTGCATGTTTATGATAT-GAACTGTAAGGGC-ATTCACCAAA---  676

seq1  TTAGTCACACAGGCTGGTGATATGAATAAGTCACACTTACTTACTATGTT  749
       |||||  ||| || || || ||||||||||| ||||    |||||||||
seq2  CTAGTC-TACAAGCCGGGGA-ATGAATAAGTC-CACTGTGCTACTATGTT  723

seq1  CAGGTACTAGGGTTTCTTTAGGGAAACATGAATATTCAATTATTCATA-T  798
      |||   ||||||  || |||||   ||  | ||||   | ||||| || |
seq2  CAG--TCTAGGG--TCCTTAGG---AC-CGGATAT--CACTATTCCTACT  763

seq1  CTCATATTACCAGAAGTTATTAGAAACTC  827
      |||||| ||||   ||||||  |||||||
seq2  CTCATA-TACC--GAGTTAT--GAAACTC  787

seq1: chr16_76808118_76809247
seq2: B6Ng01-054H16.g_67_1183 (reverse)

seq1  TCTCTCTCTCTCCCTAAGAAAATAATATATTACAGCTGTATATGTAGCTC  50
      |||| ||||| ||||||||||||||| || | ||||||||| ||||||||
seq2  TCTC-CTCTC-CCCTAAGAAAATAAT-TAATTCAGCTGTAT-TGTAGCTC  46

seq1  AATTGTGGAGGTCAGGCCTAATAGCCTCATATGTCTGAGGCAGATTCAAA  100
      || |||| ||||| |||||||||||||||| ||| |||||||||||||||
seq2  AA-TGTGAAGGTCGGGCCTAATAGCCTCAT-TGTTTGAGGCAGATTCAAA  94

seq1  CCAACAGATAAAGAAGAAAAAAAATGACATGACTTGTAGATTAGAACTTT  150
      ||||||||||||||||||||||||||||| ||| ||||||||||| ||| 
seq2  CCAACAGATAAAGAAGAAAAAAAATGACA-GAC-TGTAGATTAGACCTT-  141

seq1  AAGACTTGCAGATGAGAATTTCACACATAAGAACTTGACACATAAATATA  200
       ||||||||||||||| ||||||||||||||||| |||||||| ||||||
seq2  -AGACTTGCAGATGAG-ATTTCACACATAAGAACCTGACACAT-AATATA  188

seq1  TACACACATACACACACAGCCACACACATGCACACTTATGCACACATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATACACACACAGCCACACACATGCACACTTATGCACACATTCA  238

seq1  TGCACATGCACACACATATAAAGCCCACTTTTCCAACCCCTAAAATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATGCACACACATATAAAGCCCACTTTTCCAACCCCTAAAATGTAT  288

seq1  TTTAAACTATAGACAGACGAGAAACAAAAAAATGACATCATTCTTTGAGT  350
      ||||||||||||||||||||| ||||||||||||||||||||| ||||||
seq2  TTTAAACTATAGACAGACGAGCAACAAAAAAATGACATCATTC-TTGAGT  337

seq1  ATCCTACCAGTACTATCAAAATATGGAAGGTAGGGTTAAAAAGAATCACT  400
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCCTACCAGTGCTATCAAAATATGGAAGGTAGGGTTAAAAAGAATCACT  387

seq1  GTTATTTCCTACTATGTAGAATTTTTCCTCTTAAACTCTAATGATACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCCTACTATGTAGAATTTTTCCTCTTAAACTCTAATGATACTTT  437

seq1  TCTTAAGAAGCTTATTAATGCAAATGTACCTAAAGATTGTGAAGAAACCT  500
      ||||||||||||||||||||||||||||| || ||||||||||||||| |
seq2  TCTTAAGAAGCTTATTAATGCAAATGTACGTACAGATTGTGAAGAAACAT  487

seq1  ACAAAAATTAGTGAGTAATTCCGGTGACAAGTCCAAGTCGGCACAAAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATTAGTGAGTAATTCCGGTGACAAGTCCAAGTCGGCACAAAGAG  537

seq1  CTGGCAACACCATGATTTTGTTAGGACTGTAGTAAAGAGAATGATGAAGC  600
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTGGCAACACCATGATTTTGTTAGGACAGTAGTAAAGAGAATGATGAAGC  587

seq1  TGTTATGGACTTGCCACATTAATGAAATCTCACCTTGAGAAACTAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGGACTTGCCACATTAATGAAATCTCACCTTGAGAAACTAAGAAC  637

seq1  AAGAAAGATAATAACAGAGACGATGAGTCTCCACAAGTGGGAGACTTTCC  700
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAGAAAGATAATAACAGAGATGATGAGTCTCCACAAGTGGGAGACTTTCC  687

seq1  CAGCCAAATTCCACTGACAGCCAAAAAGATGAGGCGAGGCTATTTCTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAAATTCCACTGACAGCCAAAAAGATGAGGCGAGGCTATTTCTAAA  737

seq1  AACTGAACTCAAGAATTAATGGTGATTTATTACTCTGAGACTTTGACATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACTCAAGAATTAATGGTGATTTATTACTCTGAGACTTTGACATT  787

seq1  AATTAAAGCAAATTTAGCTGTATCCTTATCACTCCAAGCTGATGTTATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGCAAATTTAGCTGTATCCTTATCACTCCAAGCTGATGTTATTG  837

seq1  CAGTTGGCTGGCACGAGAAGACAAATTACTCAGGCAAGGGTTGCCAGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGCTGGCACGAGAAGACAAATTACTCAGGCAAGGGTTGCCAGTCC  887

seq1  ATCACATCCTCCTGAAATGTTTTCCTAATCCAGGAGAATGGTTTTTGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATCCTCCTGAAATGTTTTCCTAATCCAGGAGAATGGTTTTTGGAA  937

seq1  CTCTAGAACCCCTAAATTAAATTATGTTGGTGGGACCCTAGCCTGGCTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAACCCCTAAATTAAATTATGTTGGTGGGACCCTAGCCTGGCTAT  987

seq1  TCCCTTAATCTTGGCTGTTTGTACTTCTTTAAAATGGATGACTTAGTTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTAATCTTGGCTGTTTGTACTTCTTTAAAATGGATGACTTAGTTCT  1037

seq1  TTTTGTAAACTATCAAAGACAATTCATGATGTGTAGAGAAATAGTTGAGA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAACTATCAAAGACAATTCATGATGTGTAGAGAAATAGTTGAGA  1087

seq1  GAGGTTTTGAGGCAGAAGTAGAGTGAATTC  1130
      ||||||||||||||||||||||||||||||
seq2  GAGGTTTTGAGGCAGAAGTAGAGTGAATTC  1117