BAC Information

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BAC

Clone NameB6Ng01-054L01
Chromosome6 (Build37)
Map Location 86,762,983 - 86,815,708
singlet/doubletdoublet
Overlap gene2610306M01Rik, Aak1
Upstream geneCml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2, Tgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4
Downstream geneLOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054L01.bB6Ng01-054L01.g
ACCDH877367DH877368
length1,1251,131
definitionDH877367|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L01, 5' end.DH877368|Mus musculus domesticus DNA, BAC clone: B6Ng01-054L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,814,552 - 86,815,708)(86,762,983 - 86,764,129)
sequence
gaattccaagtgaattctatatatggtgtggcagggtctgtgcaggtgag
tgacaggaactgaaccctatcctctgcaagagcaatttgtgcttacctat
ctctcctgcccatttttactttttccaataccattatctacctggccaca
caagccagaaatcccaatgctagatcctctttctcttccctctcatatca
cttaataactaatgttcatttttctaaatttctgggaaggatcaagaaag
acatgagaaaaacaaaaacaaaggaatctttcatctccactaagaatact
tcccagcatccatagcccaaacacaaggcaggccacagctaaaagtaata
ataataataatgataatcataataatcaaatcaggaatattgttttaatc
ctagctacacagatctgtcccttcaattcaatcaaccccatcccactctc
tctctcccaagttgcctcaacagaaatcctagaacttaaaaacaactgag
ttagaagaagcctttaggaccatccacaaactcagagaggaggagaatat
gccctagtctgctagaatgagccaactacccagttcctggcctcatacag
ttatctgttcgtagtctatgaaccaaccctaagacttgaaacattccatc
atgttagaaatcacactgtaattcctaagtaagaacacagccacttaaat
aatgcattgatatttgctctgagctatgcgttcaaaacttcaaagcagaa
agactacatcaccttttgagaaaaatctccattacccaataaaagaaaga
aataaaaaacaaccaaacaaacaaacaaaacacctttttacaagtgaatc
accacaactggtcagaggtcctacagagatgacgctcaccaggcaagcca
ctagcccaggtccgctgctgatctctctttccctctcctagccctgcagg
aacagagcaatgtgtgcatgctctgtgcgcatcgctgagtcagatgctac
ctctctacttatactcagctgctctcgtgtagtccctctgtctcacacta
acccactctctctgagctccctcctctggctatactcagcaatcattaac
ctctatagctacttctgccctatga
gaattctctttgtagccccagatgaacttgaacttctgatcctcctgtct
ctacttgccaagtgatggcatgataggtgttaatcagcatgcatgtctta
ctgcagttttctcaagctccccagaagctgttgatatttgtcacttggtc
attgcatcatcctcgtagaggaggagccatgacacaaagtcagtaaaatt
agggactggtgagatagatgactcagtggttaaaagcgttggctgctctt
tctgaggacccaagttcaattctcagcacttacacggcagctcacaactg
tctgtaacttcaattgcagaacacctgtcgcctgcacacaggcatacatg
caggcaaaatatcaatgcacagaaaaataaacaaatccttttaaaatttt
ttcaaaaatgtagtaaaaacaaatagcaacatgcagcagggggcgctgta
gaaaagcccttagcagatcaggacaaactctgctgtggttctgaacctgg
actctggacaggctcaccatctggccaggtgtctcaagcccctctgggtc
aggagcctggctattgactgggctcgggctgaaccctgacagcctcacag
gcaaatttgccacaaatgaagagccccagcgtgagcagtctccctgcact
ccctgccaacaggcagcacaagttcaagggagtccagctggattcctggc
tctgcctgggtcacagggagcaaggtgctgaggtcagatgcagcctgtgg
ctcaaggggtgacgacacaggagcatcaaggggcacactacaggtggctt
caataactcaaattattctagatttctctcgttctccttcgaagaaaaaa
gtagttaggtctccagggaagtcattagcaaaaactaagtaaaaaacaga
atcatagagtggtattgtaaactggacctctgcatcatatatgccacggt
gctggagaacgctggagtctcagtcacactcctgctcagagccccatgcc
tgtctagctgtctctgctgtgtatatttggacctgaagtcctgtgtgggt
ctcagtactcacagcacccttcatttctaacaacagaacaattcctcaga
gagctcagttctctactgcatgccacatagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86814552_86815708
seq2: B6Ng01-054L01.b_47_1171 (reverse)

seq1  TCATAGGGGCAGGAAGTAGCTATTAGAAGTGTATAGATTTGCTGAAGGTA  50
      ||||| ||||| |||||||||| |||| || ||  || |||||||  |||
seq2  TCATA-GGGCA-GAAGTAGCTA-TAGAGGT-TAATGA-TTGCTGA--GTA  43

seq1  TAGCCAGGAAGGGAGGGGGAGCCTCAGAGAGAGTGGGGTTTAGTTGTGGA  100
      |||||||    |||||| |   |||||||||||||||  |||| ||| ||
seq2  TAGCCAG---AGGAGGGAG---CTCAGAGAGAGTGGG--TTAG-TGT-GA  83

seq1  GACAGAAGGGACTAACACCGAAGAGCAGCTGAGTATAAAGTTAGAGAGGT  150
      ||||| ||||||| ||||   |||||||||||||||||   |||||||||
seq2  GACAG-AGGGACT-ACAC--GAGAGCAGCTGAGTATAA--GTAGAGAGGT  127

seq1  AGCATCTGAACTCAGCGAATGCGCCACCAGAGCATGGCACACATTGCTCT  200
      |||||||| |||||||| ||||||   |||||||| ||||||||||||||
seq2  AGCATCTG-ACTCAGCG-ATGCGC--ACAGAGCAT-GCACACATTGCTCT  172

seq1  GTTCCTGCAGGGCTAGGAGAGGGAAAGAGAGATCAGCAGCGGACCTGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTGCAGGGCTAGGAGAGGGAAAGAGAGATCAGCAGCGGACCTGGGC  222

seq1  TAGTGGCTTGCCTGGTGAGCGTCATCTCTGTAGGACCTCTGACCAGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCTTGCCTGGTGAGCGTCATCTCTGTAGGACCTCTGACCAGTTGT  272

seq1  GGTGATTCACTTGTAAAAAGGTGTTTTGTTTGTTTGTTTGGTTGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  GGTGATTCACTTGTAAAAAGGTGTTTTGTTTGTTTGTTTGGTTG----TT  318

seq1  TTTTTTTTTTTTTTTTTTTTTGGTAATGGAGATTTTTCTCAAAAGGTGAT  400
      |||| ||| ||| |||| || |||||||||||||||||||||||||||||
seq2  TTTTATTTCTTTCTTTTATTGGGTAATGGAGATTTTTCTCAAAAGGTGAT  368

seq1  GTAGTCTTTCTGCTTTGAAGTTTTGAACGCATAGCTCAGAGCAAATATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTTCTGCTTTGAAGTTTTGAACGCATAGCTCAGAGCAAATATCA  418

seq1  ATGCATTATTTAAGTGGCTGTGTTCTTACTTAGGAATTACAGTGTGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTATTTAAGTGGCTGTGTTCTTACTTAGGAATTACAGTGTGATTT  468

seq1  CTAACATGATGGAATGTTTCAAGTCTTAGGGTTGGTTCATAGACTACGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATGATGGAATGTTTCAAGTCTTAGGGTTGGTTCATAGACTACGAA  518

seq1  CAGATAACTGTATGAGGCCAGGAACTGGGTAGTTGGCTCATTCTAGCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAACTGTATGAGGCCAGGAACTGGGTAGTTGGCTCATTCTAGCAGA  568

seq1  CTAGGGCATATTCTCCTCCTCTCTGAGTTTGTGGATGGTCCTAAAGGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCATATTCTCCTCCTCTCTGAGTTTGTGGATGGTCCTAAAGGCTT  618

seq1  CTTCTAACTCAGTTGTTTTTAAGTTCTAGGATTTCTGTTGAGGCAACTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAACTCAGTTGTTTTTAAGTTCTAGGATTTCTGTTGAGGCAACTTG  668

seq1  GGAGAGAGAGAGTGGGATGGGGTTGATTGAATTGAAGGGACAGATCTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAGAGAGTGGGATGGGGTTGATTGAATTGAAGGGACAGATCTGTG  718

seq1  TAGCTAGGATTAAAACAATATTCCTGATTTGATTATTATGATTATCATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGGATTAAAACAATATTCCTGATTTGATTATTATGATTATCATTA  768

seq1  TTATTATTATTACTTTTAGCTGTGGCCTGCCTTGTGTTTGGGCTATGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTACTTTTAGCTGTGGCCTGCCTTGTGTTTGGGCTATGGAT  818

seq1  GCTGGGAAGTATTCTTAGTGGAGATGAAAGATTCCTTTGTTTTTGTTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAAGTATTCTTAGTGGAGATGAAAGATTCCTTTGTTTTTGTTTTT  868

seq1  CTCATGTCTTTCTTGATCCTTCCCAGAAATTTAGAAAAATGAACATTAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTCTTTCTTGATCCTTCCCAGAAATTTAGAAAAATGAACATTAGT  918

seq1  TATTAAGTGATATGAGAGGGAAGAGAAAGAGGATCTAGCATTGGGATTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAGTGATATGAGAGGGAAGAGAAAGAGGATCTAGCATTGGGATTTC  968

seq1  TGGCTTGTGTGGCCAGGTAGATAATGGTATTGGAAAAAGTAAAAATGGGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGTGTGGCCAGGTAGATAATGGTATTGGAAAAAGTAAAAATGGGC  1018

seq1  AGGAGAGATAGGTAAGCACAAATTGCTCTTGCAGAGGATAGGGTTCAGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGATAGGTAAGCACAAATTGCTCTTGCAGAGGATAGGGTTCAGTT  1068

seq1  CCTGTCACTCACCTGCACAGACCCTGCCACACCATATATAGAATTCACTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACTCACCTGCACAGACCCTGCCACACCATATATAGAATTCACTT  1118

seq1  GGAATTC  1157
      |||||||
seq2  GGAATTC  1125

seq1: chr6_86762983_86764129
seq2: B6Ng01-054L01.g_66_1196

seq1  GAATTCTCTTTGTAGCCCCAGATGAACTTGAACTTCTGATCCTCCTGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTGTAGCCCCAGATGAACTTGAACTTCTGATCCTCCTGTCT  50

seq1  CTACTTGCCAAGTGATGGCATGATAGGTGTTAATCAGCATGCATGTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTGCCAAGTGATGGCATGATAGGTGTTAATCAGCATGCATGTCTTA  100

seq1  CTGCAGTTTTCTCAAGCTCCCCAGAAGCTGTTGATATTTGTCACTTGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTTTTCTCAAGCTCCCCAGAAGCTGTTGATATTTGTCACTTGGTC  150

seq1  ATTGCATCATCCTCGTAGAGGAGGAGCCATGACACAAAGTCAGTAAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCATCATCCTCGTAGAGGAGGAGCCATGACACAAAGTCAGTAAAATT  200

seq1  AGGGACTGGTGAGATAGATGACTCAGTGGTTAAAAGCGTTGGCTGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACTGGTGAGATAGATGACTCAGTGGTTAAAAGCGTTGGCTGCTCTT  250

seq1  TCTGAGGACCCAAGTTCAATTCTCAGCACTTACACGGCAGCTCACAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACCCAAGTTCAATTCTCAGCACTTACACGGCAGCTCACAACTG  300

seq1  TCTGTAACTTCAATTGCAGAACACCTGTCGCCTGCACACAGGCATACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAACTTCAATTGCAGAACACCTGTCGCCTGCACACAGGCATACATG  350

seq1  CAGGCAAAATATCAATGCACAGAAAAATAAACAAATCCTTTTAAAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAAAATATCAATGCACAGAAAAATAAACAAATCCTTTTAAAATTTT  400

seq1  TTCAAAAATGTAGTAAAAACAAATAGCAACATGCAGCAGGGGGCGCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAATGTAGTAAAAACAAATAGCAACATGCAGCAGGGGGCGCTGTA  450

seq1  GAAAAGCCCTTAGCAGATCAGGACAAACTCTGCTGTGGTTCTGAACCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCCCTTAGCAGATCAGGACAAACTCTGCTGTGGTTCTGAACCTGG  500

seq1  ACTCTGGACAGGCTCACCATCTGGCCAGGTGTCTCAAGCCCCTCTGGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACAGGCTCACCATCTGGCCAGGTGTCTCAAGCCCCTCTGGGTC  550

seq1  AGGAGCCTGGCTATTGACTGGGCTCGGGCTGAACCCTGACAGCCTCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTGGCTATTGACTGGGCTCGGGCTGAACCCTGACAGCCTCACAG  600

seq1  GCAAATTTGCCACAAATGAAGAGCCCCAGCGTGAGCAGTCTCCCTGCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTGCCACAAATGAAGAGCCCCAGCGTGAGCAGTCTCCCTGCACT  650

seq1  CCCTGCCAACAGGCAGCACAAGTTCAAGGGAGTCCAGCTGGATTCCTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCAACAGGCAGCACAAGTTCAAGGGAGTCCAGCTGGATTCCTGGC  700

seq1  TCTGCCTGGGTCACAGGGAGCAAGGTGCTGAGGTCAGATGCAGCCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTGGGTCACAGGGAGCAAGGTGCTGAGGTCAGATGCAGCCTGTGG  750

seq1  CTCAAGGGGTGACGACACAGGAGCATCAAGGGGCACACTACAGGTGGCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGGGTGACGACACAGGAGCATCAAGGGGCACACTACAGGTGGCTT  800

seq1  CAATAACTCAAATTATTCTAGATTTCTCTCGTTCTCCTTCGAAGAAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTCAAATTATTCTAGATTTCTCTCGTTCTCCTTCGAAGAAAAAA  850

seq1  GTAGTTAGGTCTCCAGGGAAGTCATTAGCAAAAACTAAGTAAAAAACAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTAGGTCTCCAGGGAAGTCATTAGCAAAAACTAAGTAAAAAACAGA  900

seq1  ATCATAGAGTGGTATTGTAAACTGGACCTCTGCATCATATATGCCACGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGAGTGGTATTGTAAACTGGACCTCTGCATCATATATGCCACGGT  950

seq1  GCTGGAGAAGGCTGGAGTCTCAGTCACACTCCTGCTCAGAGGCCCCCATG  1000
      ||||||||| |||||||||||||||||||||||||||||||  |||||| 
seq2  GCTGGAGAACGCTGGAGTCTCAGTCACACTCCTGCTCAGAG--CCCCAT-  997

seq1  GCCTGTCTTAGGCTGTCCTCTGCTGTGGTTATATTTGGACCTGAAGTCCT  1050
      ||||||||   ||||| ||||||||||  |||||||||||||||||||||
seq2  GCCTGTCT--AGCTGT-CTCTGCTGTG--TATATTTGGACCTGAAGTCCT  1042

seq1  GTGTGGGTCTCAGGTACTCACAGCACCCTTCCATTTTCTAACAACAGGAC  1100
      |||||||||||| ||||||||||||||||||   ||||||||||||| ||
seq2  GTGTGGGTCTCA-GTACTCACAGCACCCTTC--ATTTCTAACAACAGAAC  1089

seq1  AATCCCTTCCAGAGAAGCTCAGTTCTCTACTGCATGCCCACCATAGC  1147
      ||| |||  ||||| |||||||||||||||||||||||   ||||||
seq2  AATTCCT--CAGAG-AGCTCAGTTCTCTACTGCATGCC--ACATAGC  1131