BAC Information

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BAC

Clone NameB6Ng01-055H03
Chromosome6 (Build37)
Map Location 75,613,211 - 75,661,112
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055H03.bB6Ng01-055H03.g
ACCDH877892DH877893
length1,0481,017
definitionDH877892|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H03, 5' end.DH877893|Mus musculus domesticus DNA, BAC clone: B6Ng01-055H03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,613,211 - 75,614,267)(75,660,106 - 75,661,112)
sequence
gaattcacacacatttgactatttctaaaattaggctggggaattgtatc
agtggtaaagtgatgtgctgtacaacacaaggaactgagttaagttccct
agaacccaaaaggccaggtaaagtggtatgcacctgtaaaacaagtactg
ggcaaagattgagataagcaggttccatgagccaggtgacaagagttctt
gtttatagtgcaccatctaggttcagtgagaccttgtctcaaacagtaca
gtgaagaaccatagaagatagtggatattgacctctgacccctaaatgca
gagatatgtgaatacaggtatgcacatacattcatgaaaattatgcatac
acttatgttcaaaaaacactccaaataaacaattattatagataaaaata
atttaagattataataatctattttcagactttattgttctaataaaaat
gcagagtataaagcttactgccttaatcctttaaaagtgtatcgctcagc
aaggtttcaggaatcatgcagttggcctggacttgataccttacggggca
catgtcatatgtttttctggttataatctatggctcctccagttcctaaa
aacaccaatgcattcccttaggcagtgaatcttcaggctgcttcgtgttt
ctctttgtgttttcttagtagtcacagaatgcactagctcagaaacatta
tgctcattaaacaatatttctatttttcttctccctctgaaactttaaga
aataattttctttgttaattaaaaaaataaacttaaagtataacaaataa
acgtcatctcttctctcattagtttcttttttaaaattttagtagatatt
ttcttatttacatttcaaattttatcccctttcctcatctctcctccgaa
aacccccctatcccacccctcctccctgcttactcacccattcactcctg
cttccctatcctggcattccactacactggggcatcgagccttcacaaac
caagaactctctctcatgatgtctacaagcatctctgctacatatgtg
gaattcatttttcaaattctggacttttttttaccaattgaatcaatcct
aaatttgttgttccttgagcaacactcaggcatttattctcttgacatta
agttattttacgttcattgaggtttttgtttgtttgttttgtttttcctt
taaatttcttgagttttttaaatgaactttatgatttcttttgcaaattt
tgtggtacaatattttgtaccattttgtggtacaaatatgggaattttta
ttggcaagtctatcaatagtactggaggattttatttagaaagagaaaaa
taattaggtttttaatattgtttgtatttttataatgaaacattgttttg
tagacctctactctttaactgatatgaacaaagcaggctgaggtagaaca
aacaatatgaagactagattaagcctggaggttgaatgaagttgggtgga
ctgagaaggtgtgtaccccaaaacaatttgatgctcattagaaacacctt
agatacctctaatggacaaaaagcaaaaggtaaaataaggattatcactg
caaaataagtgataaataggtataattttatcatagaatacactctggtg
tgaaaaaagacaaaatagaatctaaacaaaaactttcatcatatagaaat
aaagatctgaattcacaaagcagattaattaagatgaatacttgtgtgcc
caacatttggatgaggaaggcaagttttactaggagagtagagtcataaa
tattagcatgttgataacagattccagaagcccacttctaatgtaaatta
tctgtatgctaaatcaatgaaaacatattgacctttaaactatattgtag
acacatgatacgatttcatctaaaagcaaaataatcagaaattctgtata
aaggaatgacaaaagaagatagtatcttcaaagataaatatatttatata
atatatttatataaatacttaaataataaaacagctataattaaattata
ttcatcgaaagcaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75613211_75614267
seq2: B6Ng01-055H03.b_44_1091

seq1  GAATTCACACACATTTGACTATTTCTAAAATTAGGCTGGGGAATTGTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACATTTGACTATTTCTAAAATTAGGCTGGGGAATTGTATC  50

seq1  AGTGGTAAAGTGATGTGCTGTACAACACAAGGAACTGAGTTAAGTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAAAGTGATGTGCTGTACAACACAAGGAACTGAGTTAAGTTCCCT  100

seq1  AGAACCCAAAAGGCCAGGTAAAGTGGTATGCACCTGTAAAACAAGTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCAAAAGGCCAGGTAAAGTGGTATGCACCTGTAAAACAAGTACTG  150

seq1  GGCAAAGATTGAGATAAGCAGGTTCCATGAGCCAGGTGACAAGAGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGATTGAGATAAGCAGGTTCCATGAGCCAGGTGACAAGAGTTCTT  200

seq1  GTTTATAGTGCACCATCTAGGTTCAGTGAGACCTTGTCTCAAACAGTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATAGTGCACCATCTAGGTTCAGTGAGACCTTGTCTCAAACAGTACA  250

seq1  GTGAAGAACCATAGAAGATAGTGGATATTGACCTCTGACCCCTAAATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGAACCATAGAAGATAGTGGATATTGACCTCTGACCCCTAAATGCA  300

seq1  GAGATATGTGAATACAGGTATGCACATACATTCATGAAAATTATGCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATGTGAATACAGGTATGCACATACATTCATGAAAATTATGCATAC  350

seq1  ACTTATGTTCAAAAAACACTCCAAATAAACAATTATTATAGATAAAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGTTCAAAAAACACTCCAAATAAACAATTATTATAGATAAAAATA  400

seq1  ATTTAAGATTATAATAATCTATTTTCAGACTTTATTGTTCTAATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATTATAATAATCTATTTTCAGACTTTATTGTTCTAATAAAAAT  450

seq1  GCAGAGTATAAAGCTTACTGCCTTAATCCTTTAAAAGTGTATCGCTCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTATAAAGCTTACTGCCTTAATCCTTTAAAAGTGTATCGCTCAGC  500

seq1  AAGGTTTCAGGAATCATGCAGTTGGCCTGGACTTGATACCTTACGGGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCAGGAATCATGCAGTTGGCCTGGACTTGATACCTTACGGGGCA  550

seq1  CATGTCATATGTTTTTCTGGTTATAATCTATGGCTCCTCCAGTTCCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCATATGTTTTTCTGGTTATAATCTATGGCTCCTCCAGTTCCTAAA  600

seq1  AACACCAATGCATTCCCTTAGGCAGTGAATCTTCAGGCTGCTTCGTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAATGCATTCCCTTAGGCAGTGAATCTTCAGGCTGCTTCGTGTTT  650

seq1  CTCTTTGTGTTTTCTTAGTAGTCACAGAATGCACTAGCTCAGAAACATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGTGTTTTCTTAGTAGTCACAGAATGCACTAGCTCAGAAACATTA  700

seq1  TGCTCATTAAACAATATTTCTATTTTTCTTCTCCCTCTGAAACTTTAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTAAACAATATTTCTATTTTTCTTCTCCCTCTGAAACTTTAAGA  750

seq1  AATAATTTTCTTTGTTAATTAAAAAAATAAACTTAAAGTATAACAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTTTCTTTGTTAATTAAAAAAATAAACTTAAAGTATAACAAATAA  800

seq1  ACGTCATCTCTTCTCTCATTAGTTTCTTTTTTAAAATTTTAGTAGATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCATCTCTTCTCTCATTAGTTTCTTTTTTAAAATTTTAGTAGATATT  850

seq1  TTCTTTATTTACATTTCAAATTTTATCCCCTTTCCTCATCTCTCCTCCGA  900
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-TTATTTACATTTCAAATTTTATCCCCTTTCCTCATCTCTCCTCCGA  899

seq1  AAACCCCCCTATCCCACCCCTCCTCCCTGCTTACTCACCCATTCACTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCTATCCCACCCCTCCTCCCTGCTTACTCACCCATTCACTCCT  949

seq1  GCTTCCCTATCCTGGCATTCCACTACACTGGGGCATCGAGCCTTCACAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCTTCCCTATCCTGGCATTCCACTACACTGGGGCATCGAGCCTTCAC-AA  998

seq1  ACCAAGGAACTCTCCTCTCATTGATGTCCTACAAGGCCATCCTCTGCTAC  1050
      ||||| ||||||| |||||| |||||| |||||||  ||| |||||||||
seq2  ACCAA-GAACTCT-CTCTCA-TGATGT-CTACAAG--CAT-CTCTGCTAC  1041

seq1  ATATGTG  1057
      |||||||
seq2  ATATGTG  1048

seq1: chr6_75660106_75661112
seq2: B6Ng01-055H03.g_67_1069 (reverse)

seq1  GAATATTAATTTAATTATAGCTGTTTTATTTATTTAAGTATTTATATAAA  50
      ||||| |||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATA-TAATTTAATTATAGCTGTTTTA-TTATTTAAGTATTTATATAAA  48

seq1  TATATTTATATAAATATATTTATCTTTGAAGATACTATCTTCTTTTTGTC  100
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATA-TTATATAAATATATTTATCTTTGAAGATACTATCTTC-TTTTGTC  96

seq1  ATTCCTTTATACAGAATTTCTGATTATTTTGCTTTTAGATGAAATCGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTTATACAGAATTTCTGATTATTTTGCTTTTAGATGAAATCGTAT  146

seq1  CATGTGTCTACAATATAGTTTAAAGGTCAATATGTTTTCATTGATTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCTACAATATAGTTTAAAGGTCAATATGTTTTCATTGATTTAGC  196

seq1  ATACAGATAATTTACATTAGAAGTGGGCTTCTGGAATCTGTTATCAACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGATAATTTACATTAGAAGTGGGCTTCTGGAATCTGTTATCAACAT  246

seq1  GCTAATATTTATGACTCTACTCTCCTAGTAAAACTTGCCTTCCTCATCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATATTTATGACTCTACTCTCCTAGTAAAACTTGCCTTCCTCATCCA  296

seq1  AATGTTGGGCACACAAGTATTCATCTTAATTAATCTGCTTTGTGAATTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGGGCACACAAGTATTCATCTTAATTAATCTGCTTTGTGAATTCA  346

seq1  GATCTTTATTTCTATATGATGAAAGTTTTTGTTTAGATTCTATTTTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTATTTCTATATGATGAAAGTTTTTGTTTAGATTCTATTTTGTCT  396

seq1  TTTTTCACACCAGAGTGTATTCTATGATAAAATTATACCTATTTATCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACACCAGAGTGTATTCTATGATAAAATTATACCTATTTATCACT  446

seq1  TATTTTGCAGTGATAATCCTTATTTTACCTTTTGCTTTTTGTCCATTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCAGTGATAATCCTTATTTTACCTTTTGCTTTTTGTCCATTAGA  496

seq1  GGTATCTAAGGTGTTTCTAATGAGCATCAAATTGTTTTGGGGTACACACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTAAGGTGTTTCTAATGAGCATCAAATTGTTTTGGGGTACACACC  546

seq1  TTCTCAGTCCACCCAACTTCATTCAACCTCCAGGCTTAATCTAGTCTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGTCCACCCAACTTCATTCAACCTCCAGGCTTAATCTAGTCTTCA  596

seq1  TATTGTTTGTTCTACCTCAGCCTGCTTTGTTCATATCAGTTAAAGAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGTTCTACCTCAGCCTGCTTTGTTCATATCAGTTAAAGAGTAG  646

seq1  AGGTCTACAAAACAATGTTTCATTATAAAAATACAAACAATATTAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTACAAAACAATGTTTCATTATAAAAATACAAACAATATTAAAAAC  696

seq1  CTAATTATTTTTCTCTTTCTAAATAAAATCCTCCAGTACTATTGATAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTTTTCTCTTTCTAAATAAAATCCTCCAGTACTATTGATAGAC  746

seq1  TTGCCAATAAAAATTCCCATATTTGTACCACAAAATGGTACAAAATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAATAAAAATTCCCATATTTGTACCACAAAATGGTACAAAATATTG  796

seq1  TACCACAAAATTTGCAAAAGAAATCATAAAGTTCATTTAAAAAACTCAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAAAATTTGCAAAAGAAATCATAAAGTTCATTTAAAAAACTCAAG  846

seq1  AAATTTAAAGGAAAAACAAAACAAACAAACAAAAACCTCAATGAACGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGGAAAAACAAAACAAACAAACAAAAACCTCAATGAACGTAA  896

seq1  AATAACTTAATGTCAAGAGAATAAATGCCTGAGTGTTGCTCAAGGAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTAATGTCAAGAGAATAAATGCCTGAGTGTTGCTCAAGGAACAA  946

seq1  CAAATTTAGGATTGATTCAATTGGTAAAAAAAAGTCCAGAATTTGAAAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTAGGATTGATTCAATTGGTAAAAAAAAGTCCAGAATTTGAAAAA  996

seq1  TGAATTC  1007
      |||||||
seq2  TGAATTC  1003