BAC Information

Click to search

BAC

Clone NameB6Ng01-055P20
Chromosome6 (Build37)
Map Location 18,993,913 - 18,994,999
singlet/doubletsinglet
Overlap geneLOC626180
Upstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneEif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055P20.bB6Ng01-055P20.g
ACCDH878288DH878289
length1,1511,083
definitionDH878288|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P20, 5' end.DH878289|Mus musculus domesticus DNA, BAC clone: B6Ng01-055P20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactactggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatatggtacatctacacaatg
gagtactactcagctattaaaaagaatgaattaatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtacttactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctcctttgaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccttatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgcccgggcctagcaaac
acagaagtggatgcccacagtcagctaatggatggatcacagggctccaa
tggaggagctagagaaagtacccagagctaaagggatctgcaaccctata
gtgattaacattatgactacagtacccgagctctgactctagctgcatat
gtatcaaagatgctatcagccatcccttgaaggagccatgacaaccaact
tattgccaaacaggacgcagccaaaggggagtgcggataggggaatgtgg
g

gaattccaagatttttcttcagtctaaaatctgtctctatctttctatct
atttatctatctattctctatatgtatatcatctatttattatcttgggg
tttgccaacaataggtaatcataaataaatataatctcttagtatgtgct
tattatccaatgattctagttcccataggttctccaaatagacaaactga
tatttgtttgtctcagttttcagaaacaatgaataagttccttgaaaaac
aattattagcctatgttgtggtttctatgaaaagactggctttaaaaatg
ttttgtaaactgggcatggtggcgcatgcctttaatcccagcacttggga
ggcagaggccatccagtgtgtaatacagagtgagttccaggacagccagg
actacacaaagaaaccctgtctcgaaaaacaaaaaccaaaaaccaaacca
aaacaaaacaaaaacaaacaaacaaaaaattgttttgtaattttactaaa
gattggatgaattcacagagggattgggtcacagactacaaagccctctc
agggctaacttcccttctcaattttggaagcattcaaagaggctgtatcc
tccctattctggcctaacaaataggcacataccctcttctctccctactc
ttctttgctccatgggttttcccccattaattccctagctttttagtgtt
tcttccatatgagataattacctatttgcaaaacacagaactattttgtc
agatgaataacttagtctgttttataaaatcctctgccagaaatatagtc
acaaatgtccaattttaaagcttaagtggtttttctgagccatgtttccc
ctcctaataagttaaataaatgttgacttttgttcctgacagattgttca
cctatagatctcacaatagtgacttagatgcttaaaaattttgtggaaaa
taagtaccagagatatgactatcacatactcttttcctagatcattagta
aatgtgcatttgtatctcatgagccaaataacattgaccatcataaatga
gactctaaaagactccttcactaaagaaataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18993913_18994999
seq2: B6Ng01-055P20.g_66_1148 (reverse)

seq1  TCTA-TTCTCTAGTG-AGGAGTCTTGTAGAGTCTCATTTATGATGGTTCA  48
      |||| |||| ||||| ||||||||| |||||||||||||||||||| |||
seq2  TCTATTTCTTTAGTGAAGGAGTCTTTTAGAGTCTCATTTATGATGG-TCA  49

seq1  ATGTTATTTGGCTTCATTGAGATACAAATGCACATTTACTTAATGATCTA  98
      |||||||||||| ||| |||||||||||||||||||||| ||||||||||
seq2  ATGTTATTTGGC-TCA-TGAGATACAAATGCACATTTAC-TAATGATCTA  96

seq1  GGAAAAGAGTATGTGATAGTCATATCTCTTGGTACTTATTTTCCACAAAA  148
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGAAAAGAGTATGTGATAGTCATATCTC-TGGTACTTATTTTCCACAAAA  145

seq1  TTTTTAAGCATCTAAGTCACTATTGTGAGATCTTATAGGTGAACAATCTG  198
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTTAAGCATCTAAGTCACTATTGTGAGATC-TATAGGTGAACAATCTG  194

seq1  TCAGGAACAAAAGTCAACATTTATTTAACTTATTAGGAGGGGAAACATGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAACAAAAGTCAACATTTATTTAACTTATTAGGAGGGGAAACATGG  244

seq1  CTCAGAAAAACCACTTAAGCTTTAAAATTGGACATTTGTGACTATATTTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAAAACCACTTAAGCTTTAAAATTGGACATTTGTGACTATATTTC  294

seq1  TGGCAGAGGATTTTATAAAACAGACTAAGTTATTCATCTGACAAAATAGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGAGGATTTTATAAAACAGACTAAGTTATTCATCTGACAAAATAGT  344

seq1  TCTGTGTTTTGCAAATAGGTAATTATCTCATATGGAAGAAACACTAAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTTTGCAAATAGGTAATTATCTCATATGGAAGAAACACTAAAAA  394

seq1  GCTAGGGAATTAATGGGGGAAAACCCATGGAGCAAAGAAGAGTAGGGAGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGAATTAATGGGGGAAAACCCATGGAGCAAAGAAGAGTAGGGAGA  444

seq1  GAAGAGGGTATGTGCCTATTTGTTAGGCCAGAATAGGGAGGATACAGCCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGTATGTGCCTATTTGTTAGGCCAGAATAGGGAGGATACAGCCT  494

seq1  CTTTGAATGCTTCCAAAATTGAGAAGGGAAGTTAGCCCTGAGAGGGCTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAATGCTTCCAAAATTGAGAAGGGAAGTTAGCCCTGAGAGGGCTTT  544

seq1  GTAGTCTGTGACCCAATCCCTCTGTGAATTCATCCAATCTTTAGTAAAAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTGTGACCCAATCCCTCTGTGAATTCATCCAATCTTTAGTAAAAT  594

seq1  TACAAAACAATTTTTTGTTTGTTTGTTTTTGTTTTGTTTTGGTTTGGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAACAATTTTTTGTTTGTTTGTTTTTGTTTTGTTTTGGTTTGGTTT  644

seq1  TTGGTTTTTGTTTTTCGAGACAGGGTTTCTTTGTGTAGTCCTGGCTGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTGTTTTTCGAGACAGGGTTTCTTTGTGTAGTCCTGGCTGTCC  694

seq1  TGGAACTCACTCTGTATTACACACTGGATGGCCTCTGCCTCCCAAGTGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCACTCTGTATTACACACTGGATGGCCTCTGCCTCCCAAGTGCT  744

seq1  GGGATTAAAGGCATGCGCCACCATGCCCAGTTTACAAAACATTTTTAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTAAAGGCATGCGCCACCATGCCCAGTTTACAAAACATTTTTAAAG  794

seq1  CCAGTCTTTTCATAGAAACCACAACATAGGCTAATAATTGTTTTTCAAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCTTTTCATAGAAACCACAACATAGGCTAATAATTGTTTTTCAAGG  844

seq1  AACTTATTCATTGTTTCTGAAAACTGAGACAAACAAATATCAGTTTGTCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTCATTGTTTCTGAAAACTGAGACAAACAAATATCAGTTTGTCT  894

seq1  ATTTGGAGAACCTATGGGAACTAGAATCATTGGATAATAAGCACATACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAGAACCTATGGGAACTAGAATCATTGGATAATAAGCACATACTA  944

seq1  AGAGATTATATTTATTTATGATTACCTATTGTTGGCAAACCCCAAGATAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTATATTTATTTATGATTACCTATTGTTGGCAAACCCCAAGATAA  994

seq1  TAAATAGATGATATACATATAGAGAATAGATAGATAAATAGATAGAAAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGATGATATACATATAGAGAATAGATAGATAAATAGATAGAAAGA  1044

seq1  TAGAGACAGATTTTAGACTGAAGAAAAATCTTGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGATTTTAGACTGAAGAAAAATCTTGGAATTC  1083


| Home | SequenceCutter | Blast | Download |