BAC Information

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BAC

Clone NameB6Ng01-056I24
Chromosome6 (Build37)
Map Location 39,458,078 - 39,459,289
singlet/doubletsinglet
Overlap geneDennd2a
Upstream gene3110054G05Rik, 1110001J03Rik, LOC621228, Luc7l2, Klrg2, LOC665180, Hipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601
Downstream geneAdck2, Ndufb2, Braf, Fth-ps2, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056I24.b
ACCDH878683
length1,206
definitionDH878683|Mus musculus domesticus DNA, BAC clone: B6Ng01-056I24, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgtagaccaggctggtctagaactcacatagatctgcctg
cctgtgcctcctaaatgctgtgaataaaggcttattccataatgcctatc
attgatttttaagacagaatctcactatattgaccaggctgacctacagc
ttgatgttaaccctccagctttagcctcccaggtgcaggcattgcagacg
tgcactgccacacccgcctcctagccactttttaaaagtttagactaaca
aacccttctttatgtgtcaggatccaaatgcaaagcatgcctcatatgtt
gacatcttgatctcacaaatatgggggaaaaaaatcacaacagagttgag
gtatatcctgaaaggccaggatgtcctgcagagtccatttggatggtggc
taatcccgtcccatcaaacccacgatcatctaaattagttgttgtgttgc
atgctctgtaagaaagggcttgtacagtgaagcatgcagacacctttcgt
tgttagtgctaggaacttcaaactacaccttcaccctatcctctaccctt
atgggacaagtctaggcaaataacctggaccggcagaggtcagagtccgt
gcaccacagcacattatcatcccagaaagcagttaatatgtatgacccag
atcccataagctggtgctctaagacttggtccctctgtcccgcttggagc
cctcagtggaggcagaagaggctaatggagcgatagcccctcctttgggg
atgggtttctgctgcaagtcgggcatttgccctggcttacattacagctc
tgcagccctggtccgaaagctttggcttgacccactttgcattctgacct
ctgctgtgtttgggacccggcctgaattgattcaagttctctctttgttt
ctctccacggtgcacaacccagaaagtcctatgagttcgaggacttacta
cagtcttcctcagagaacagcaggtggactggttatgcacagaccaaatt
gggactcacaccgcacttttatcgagagaacgtcttttgaagaaattctt
agttagaaggtcagaaaatccagaagttgagctgcctccccctcgagctg
gcgaaagaagagaaaacaccaaggctggctgtaaaagaaagtaataaaag
ggagcctggctttgctttgtcaccacctctggaaagagccaaatggtgtg
tttcca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_39458078_39459289
seq2: B6Ng01-056I24.b_48_1253 (reverse)

seq1  TGGATACACAACCATTTTTTGGTGTCT-TTTCCTGAGGTGGGTTGTACAA  49
      |||| |||| ||||||      || || ||||| |||||||  || ||||
seq2  TGGAAACAC-ACCATT------TGGCTCTTTCCAGAGGTGG--TG-ACAA  40

seq1  AGC-AAGCAGTGCTTCCCTTTTTATTACTTTCTTTTACAG-CAGCC-TGG  96
      ||| ||||   |||  || ||||||||||||||||||||| ||||| |||
seq2  AGCAAAGCCAGGCT--CCCTTTTATTACTTTCTTTTACAGCCAGCCTTGG  88

seq1  TGTTTCTCCTTCCTTTCTGCCAGCTCGA-GGGGAAGCAGCTCTACTTCTG  145
      ||||| ||  | ||||| |||||||||| ||||| ||||||| |||||||
seq2  TGTTT-TCTCTTCTTTC-GCCAGCTCGAGGGGGAGGCAGCTCAACTTCTG  136

seq1  GATTTTCTGACC-TCTTACCTAGAATGTCTTC-ATAGACGTTCTCCTCCG  193
      |||||||||||| ||| ||  ||||| ||||| | ||||||||||   ||
seq2  GATTTTCTGACCTTCTAACTAAGAATTTCTTCAAAAGACGTTCTC--TCG  184

seq1  AT-AAAGTGC-GTGTGAGTCCCAATTTGGTCTGTGCAT-ACCAGTCCACC  240
      || ||||||| ||||||||||||||||||||||||||| ||||||||| |
seq2  ATAAAAGTGCGGTGTGAGTCCCAATTTGGTCTGTGCATAACCAGTCCA-C  233

seq1  CTGCTGTTCTCTGAGGAAGACTGTAGTAAGTCCTCGAACTCATAGGACTT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTCTCTGAGGAAGACTGTAGTAAGTCCTCGAACTCATAGGACTT  283

seq1  TCTGGGTTGTGCACCGTGGAGAGAAACAAAGAGAGAACTTGAATCAATTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTGTGCACCGTGGAGAGAAACAAAGAGAGAACTTGAATCAATTC  333

seq1  AGGCC-GGTTCCAAACACAGCAGAGGTCAGAATGCAAAGTGGGTCAAGCC  389
      ||||| ||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGGTCCCAAACACAGCAGAGGTCAGAATGCAAAGTGGGTCAAGCC  383

seq1  AAAGCTTTCGGACCAGGGCTGCAGAGCTGTAATGTAAGCCAGGGCAAATG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTTCGGACCAGGGCTGCAGAGCTGTAATGTAAGCCAGGGCAAATG  433

seq1  CCCGACTTGCAGCAGAAACCCATCCCCAAAGGAGGGGCTATCGCTCCATT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTTGCAGCAGAAACCCATCCCCAAAGGAGGGGCTATCGCTCCATT  483

seq1  AGCCTCTTCTGCCTCCACTGAGGGCTCCAAGCGGGACAGAGGGACCAAGT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTTCTGCCTCCACTGAGGGCTCCAAGCGGGACAGAGGGACCAAGT  533

seq1  CTTAGAGCACCAGCTTATGGGATCTGGGTCATACATATTAACTGCTTTCT  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGCACCAGCTTATGGGATCTGGGTCATACATATTAACTGCTTTCT  583

seq1  GGGATGATAATGTGCTGTGGTGCACGGACTCTGACCTCTGCCGGTCCAGG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGATAATGTGCTGTGGTGCACGGACTCTGACCTCTGCCGGTCCAGG  633

seq1  TTATTTGCCTAGACTTGTCCCATAAGGGTAGAGGATAGGGTGAAGGTGTA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCCTAGACTTGTCCCATAAGGGTAGAGGATAGGGTGAAGGTGTA  683

seq1  GTTTGAAGTTCCTAGCACTAACAACGAAAGGTGTCTGCATGCTTCACTGT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAAGTTCCTAGCACTAACAACGAAAGGTGTCTGCATGCTTCACTGT  733

seq1  ACAAGCCCTTTCTTACAGAGCATGCAACACAACAACTAATTTAGATGATC  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCCTTTCTTACAGAGCATGCAACACAACAACTAATTTAGATGATC  783

seq1  GTGGGTTTGATGGGACGGGATTAGCCACCATCCAAATGGACTCTGCAGGA  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTTGATGGGACGGGATTAGCCACCATCCAAATGGACTCTGCAGGA  833

seq1  CATCCTGGCCTTTCAGGATATACCTCAACTCTGTTGTGATTTTTTTCCCC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGGCCTTTCAGGATATACCTCAACTCTGTTGTGATTTTTTTCCCC  883

seq1  CATATTTGTGAGATCAAGATGTCAACATATGAGGCATGCTTTGCATTTGG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTGTGAGATCAAGATGTCAACATATGAGGCATGCTTTGCATTTGG  933

seq1  ATCCTGACACATAAAGAAGGGTTTGTTAGTCTAAACTTTTAAAAAGTGGC  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGACACATAAAGAAGGGTTTGTTAGTCTAAACTTTTAAAAAGTGGC  983

seq1  TAGGAGGCGGGTGTGGCAGTGCACGTCTGCAATGCCTGCACCTGGGAGGC  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCGGGTGTGGCAGTGCACGTCTGCAATGCCTGCACCTGGGAGGC  1033

seq1  TAAAGCTGGAGGGTTAACATCAAGCTGTAGGTCAGCCTGGTCAATATAGT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGGAGGGTTAACATCAAGCTGTAGGTCAGCCTGGTCAATATAGT  1083

seq1  GAGATTCTGTCTTAAAAATCAATGATAGGCATTATGGAATAAGCCTTTAT  1139
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTCTGTCTTAAAAATCAATGATAGGCATTATGGAATAAGCCTTTAT  1133

seq1  TCACAGCATTTAGGAGGCACAGGCAGGCAGATCTATGTGAGTTCTAGACC  1189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCATTTAGGAGGCACAGGCAGGCAGATCTATGTGAGTTCTAGACC  1183

seq1  AGCCTGGTCTACACAGTGAATTC  1212
      |||||||||||||||||||||||
seq2  AGCCTGGTCTACACAGTGAATTC  1206