BAC Information

Click to search

BAC

Clone NameB6Ng01-057A01
Chromosome6 (Build37)
Map Location 87,424,464 - 87,524,256
singlet/doubletdoublet
Overlap geneArhgap25
Upstream gene2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10
Downstream geneProkr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057A01.bB6Ng01-057A01.g
ACCDH878997DH878998
length1,0851,143
definitionDH878997|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A01, 5' end.DH878998|Mus musculus domesticus DNA, BAC clone: B6Ng01-057A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,523,251 - 87,524,256)(87,424,464 - 87,425,608)
sequence
gaattccatagataaggactcttatatcaaaccatcagaaaattccagga
gggcaagggcccacaagtttccaaggaagtaagattgagtcacctggctt
cccacccagatagatgccctctgatcaagtctatgtgtccctagatactc
ttcagtagtggtccactgtcttagttaggattactactgctgtgatgaaa
cactatgaccaaaacaacttggggaggaaagggttgatttggcttacact
tccacctggaagcaggagctgatacagaagtcatggagggatgctgctta
ctgtcttgctccccatggcttgttcagcttgccttcttatagaacccagg
accaccaggccagggatggcaccacccacaatggactgagccctcctcca
tcaatcactaagaaaatgccccacagctggatcttatgaaggcattttct
caactgatggctaaagcttgtgtcaagttgacacaaaactaaccaggaca
gccatacacctccttaataccttcctccctgtgtaactagaaagagttga
gtgtatagatatgctgaataactgtttgagaaacagtaggagatagggga
accagggctggaaaaggacaaagaatatttttaagatttttgaatgactg
ggaaattaatttttctttcactacccagtattctatttttcctgggtaaa
aataaatcaacttttaatttcatagtagagattgtatttcccatcttccc
ttgttgtaggggtgactacaagttatctaccaataaaatctaagcagtaa
cttagtaaagtattcctttcatcagtaagaaaggaagctgcttaatgttt
tcattccaacttcctgctgtttaaggatatagttgtgatggccggagctc
tagtagccatctccgatattaaaataagcttgacctaaacagtgggtagg
aaatagactactgaaattctgtgggtgcccacacaacactgacatcttag
acgagaaaaacttgggcatgggactttctaaggaagttcgttcaatggcg
gtcccaatggggcccaccacactgaccattcagac
gaattctacattcttctccaaataagacttgtccactcaaggggcatatg
gacccaggagttggtcatagaactctgtctctctgtctctctctcccatc
tctctgtctctctgtgtgtctctccgtgtctgtgtgtgtatgtgtgtgca
tgcacgggtgctttcctcctccttataaactctgaatttcatgagaatat
aaaggccacagtgccaccactcatagcaacctgaccgagtgtaagctggc
atcaaagcagtcatttggaaaatcccagcaattgtgtcttttcttttgga
taacagacttcactttccaagcagtaatccatacacatctttctatcaac
ttcaatataattaaaaattaggagctgggcggtggtggcgcacgccttta
atcccagtacttgggaggcagaagcaggcggatttctgagttcgaggcca
gcctggtctacaaagtgagttccaggacagccagggctatacagagaaac
cctgtttcaaaaaacaaaaaaacaaaaaacaaaaaaacaaaaattaggaa
gaaaactggatacagtggcagtgagcctcctggaataggtacctgcttgt
aaaatgtaactgtctgtgctgttaaaaggacccttaacttgctatagttc
caatgctaactacatcactgtttgcataaactacatgagaaattaaccta
tggtatagtaagggaaggagagatagtcagatcaaactaagaccataaca
gagtcggcatggagagaaacagaggcctcagagatgcttcagtaaaaaca
aagcaagcaagctgggctgcattggtgaacagagtgaggctgaaagggaa
aagcgtgagactcctgcacaagaatgactcaacctccataactttcccct
ttgtactcaataactctaggggatttcacatgtgtaaaccgggttagcat
tcaggcccattgtaccaattcttgtttgatgagatgctatttgggaagag
gggttgggtcttagcggcagtacagtgtgtttcagggattgggtactgcc
acagtcaccaaacatgcaggtggtggtgggggcttgtcacgctaagcgtg
gcagaggactccttgcttggagcctggagaaggagagtgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_87523251_87524256
seq2: B6Ng01-057A01.b_44_1128 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  GTCTGAATGGTCAGTGTGGTGGGCCCCATTGGGACCGCCATTGAACGAAC  50

seq1  ---------------------------------GTCTGAGATGGTCAGTG  17
                                       |||| |||| |||||||
seq2  TTCCTTAGAAAGTCCCATGCCCAAGTTTTTCTCGTCTAAGAT-GTCAGTG  99

seq1  TTGGTGTGGGCA-CCACAGAATTTCAGTAGTCTATTTCCTACCCACTGTT  66
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TT-GTGTGGGCACCCACAGAATTTCAGTAGTCTATTTCCTACCCACTGTT  148

seq1  TAGGTCAAGCCTTATTTTAATTATCGGAGATGGCTACTAGAGCTCCGGCC  116
      ||||||||| |||||||||| |||||||||||||||||||||||||||||
seq2  TAGGTCAAG-CTTATTTTAA-TATCGGAGATGGCTACTAGAGCTCCGGCC  196

seq1  ATCACAACTATATTCCTTAAACAGCAGGAAGTTGGAATGAAAACATTAAG  166
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCACAACTATA-TCCTTAAACAGCAGGAAGTTGGAATGAAAACATTAAG  245

seq1  CAGCTTCCTTTCTTACTGATGAAAGGAATACTTTACTAAGTTACTGCTTA  216
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCTTTCTTACTGATGAAAGGAATACTTTACTAAGTTACTGCTTA  295

seq1  GATTTTATTGGTAGATAACTTGTAGTCACCCCTACAACAAGGGAAGATGG  266
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTGGTAGATAACTTGTAGTCACCCCTACAACAAGGGAAGATGG  345

seq1  GAAATACAATCTCTACTATGAAATTAAAAGTTGATTTATTTTTACCCAGG  316
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACAATCTCTACTATGAAATTAAAAGTTGATTTATTTTTACCCAGG  395

seq1  AAAAATAGAATACTGGGTAGTGAAAGAAAAATTAATTTCCCAGTCATTCA  366
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAGAATACTGGGTAGTGAAAGAAAAATTAATTTCCCAGTCATTCA  445

seq1  AAAATCTTAAAAATATTCTTTGTCCTTTTCCAGCCCTGGTTCCCCTATCT  416
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTAAAAATATTCTTTGTCCTTTTCCAGCCCTGGTTCCCCTATCT  495

seq1  CCTACTGTTTCTCAAACAGTTATTCAGCATATCTATACACTCAACTCTTT  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTTTCTCAAACAGTTATTCAGCATATCTATACACTCAACTCTTT  545

seq1  CTAGTTACACAGGGAGGAAGGTATTAAGGAGGTGTATGGCTGTCCTGGTT  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTACACAGGGAGGAAGGTATTAAGGAGGTGTATGGCTGTCCTGGTT  595

seq1  AGTTTTGTGTCAACTTGACACAAGCTTTAGCCATCAGTTGAGAAAATGCC  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGTCAACTTGACACAAGCTTTAGCCATCAGTTGAGAAAATGCC  645

seq1  TTCATAAGATCCAGCTGTGGGGCATTTTCTTAGTGATTGATGGAGGAGGG  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAAGATCCAGCTGTGGGGCATTTTCTTAGTGATTGATGGAGGAGGG  695

seq1  CTCAGTCCATTGTGGGTGGTGCCATCCCTGGCCTGGTGGTCCTGGGTTCT  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCATTGTGGGTGGTGCCATCCCTGGCCTGGTGGTCCTGGGTTCT  745

seq1  ATAAGAAGGCAAGCTGAACAAGCCATGGGGAGCAAGACAGTAAGCAGCAT  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGGCAAGCTGAACAAGCCATGGGGAGCAAGACAGTAAGCAGCAT  795

seq1  CCCTCCATGACTTCTGTATCAGCTCCTGCTTCCAGGTGGAAGTGTAAGCC  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCATGACTTCTGTATCAGCTCCTGCTTCCAGGTGGAAGTGTAAGCC  845

seq1  AAATCAACCCTTTCCTCCCCAAGTTGTTTTGGTCATAGTGTTTCATCACA  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAACCCTTTCCTCCCCAAGTTGTTTTGGTCATAGTGTTTCATCACA  895

seq1  GCAGTAGTAATCCTAACTAAGACAGTGGACCACTACTGAAGAGTATCTAG  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGTAATCCTAACTAAGACAGTGGACCACTACTGAAGAGTATCTAG  945

seq1  GGACACATAGACTTGATCAGAGGGCATCTATCTGGGTGGGAAGCCAGGTG  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATAGACTTGATCAGAGGGCATCTATCTGGGTGGGAAGCCAGGTG  995

seq1  ACTCAATCTTACTTCCTTGGAAACTTGTGGGCCCTTGCCCTCCTGGAATT  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATCTTACTTCCTTGGAAACTTGTGGGCCCTTGCCCTCCTGGAATT  1045

seq1  TTCTGATGGTTTGATATAAGAGTCCTTATCTATGGAATTC  1006
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGGTTTGATATAAGAGTCCTTATCTATGGAATTC  1085

seq1: chr6_87424464_87425608
seq2: B6Ng01-057A01.g_64_1206

seq1  GAATTCTACATTCTTCTCCAAATAAGACTTGTCCACTCAAGGGGCATATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACATTCTTCTCCAAATAAGACTTGTCCACTCAAGGGGCATATG  50

seq1  GACCCAGGAGTTGGTCATAGAACTCTGTCTCTCTGTCTCTCTCTCCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGAGTTGGTCATAGAACTCTGTCTCTCTGTCTCTCTCTCCCATC  100

seq1  TCTCTGTCTCTCTGTGTGTCTCTCCGTGTCTGTGTGTGTATGTGTGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTGTGTGTCTCTCCGTGTCTGTGTGTGTATGTGTGTGCA  150

seq1  TGCACGGGTGCTTTCCTCCTCCTTATAAACTCTGAATTTCATGAGAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACGGGTGCTTTCCTCCTCCTTATAAACTCTGAATTTCATGAGAATAT  200

seq1  AAAGGCCACAGTGCCACCACTCATAGCAACCTGACCGAGTGTAAGCTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCCACAGTGCCACCACTCATAGCAACCTGACCGAGTGTAAGCTGGC  250

seq1  ATCAAAGCAGTCATTTGGAAAATCCCAGCAATTGTGTCTTTTCTTTTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGCAGTCATTTGGAAAATCCCAGCAATTGTGTCTTTTCTTTTGGA  300

seq1  TAACAGACTTCACTTTCCAAGCAGTAATCCATACACATCTTTCTATCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGACTTCACTTTCCAAGCAGTAATCCATACACATCTTTCTATCAAC  350

seq1  TTCAATATAATTAAAAATTAGGAGCTGGGCGGTGGTGGCGCACGCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATAATTAAAAATTAGGAGCTGGGCGGTGGTGGCGCACGCCTTTA  400

seq1  ATCCCAGTACTTGGGAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGTACTTGGGAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCA  450

seq1  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTATACAGAGAAAC  500

seq1  CCTGTTTCAAAAAACAAAAAAACAAAAAACAAAAAAACAAAAATTAGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCAAAAAACAAAAAAACAAAAAACAAAAAAACAAAAATTAGGAA  550

seq1  GAAAACTGGATACAGTGGCAGTGAGCCTCCTGGAATAGGTACCTGCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGGATACAGTGGCAGTGAGCCTCCTGGAATAGGTACCTGCTTGT  600

seq1  AAAATGTAACTGTCTGTGCTGTTAAAAGGACCCTTAACTTGCTATAGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAACTGTCTGTGCTGTTAAAAGGACCCTTAACTTGCTATAGTTC  650

seq1  CAATGCTAACTACATCACTGTTTGCATAAACTACATGAGAAATTAACCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTAACTACATCACTGTTTGCATAAACTACATGAGAAATTAACCTA  700

seq1  TGGTATAGTAAGGGAAGGAGAGATAGTCAGATCAAACTAAGACCATAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATAGTAAGGGAAGGAGAGATAGTCAGATCAAACTAAGACCATAACA  750

seq1  GAGTCGGCATGGAGAGAAACAGAAGGCCTCAGAGATGCTTCAGTAAAAAC  800
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGTCGGCATGGAGAGAAACAG-AGGCCTCAGAGATGCTTCAGTAAAAAC  799

seq1  AAAGCAAGCAAGCTGGGCTGCATTGGTGAACAGAGTGAGGCTGAAAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGCAAGCTGGGCTGCATTGGTGAACAGAGTGAGGCTGAAAGGGA  849

seq1  AAAGCGTGAGACTCCTGCACAAGAATGACTCAACCTCCATAACTTTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTGAGACTCCTGCACAAGAATGACTCAACCTCCATAACTTTCCCC  899

seq1  TTTGTACTCAATAACTCTAGGGGATTTCAACATGTGTAAACC-GGTTAGC  949
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  TTTGTACTCAATAACTCTAGGGGATTTC-ACATGTGTAAACCGGGTTAGC  948

seq1  ATTCAGGCCCATTGTACCAAATCTTGTTTGATGAGATGCTAATTTGGAAA  999
      |||||||||||||||||||| ||||||||||||||||||| |||||| ||
seq2  ATTCAGGCCCATTGTACCAATTCTTGTTTGATGAGATGCT-ATTTGGGAA  997

seq1  GAGTGGTT-GGTCTTAAGCGGGCAGTACAAGTGTG-TTCAGGGAATTGGG  1047
      ||| |||| |||||| ||| |||||||| |||||| ||||||| ||||||
seq2  GAGGGGTTGGGTCTT-AGC-GGCAGTAC-AGTGTGTTTCAGGG-ATTGGG  1043

seq1  TACTG-CACAGTCAACAGAGCATGCAGTGTGTGGTGGGG--CTGTACAGC  1094
      ||||| |||||||| || | |||||||   |||||||||   |||   ||
seq2  TACTGCCACAGTCACCA-AACATGCAGGTGGTGGTGGGGGCTTGTCACGC  1092

seq1  TAAGCGTGGCAGAGGACATCCTTGCTGGGAGCCTGGAGAATGAGA-TGAA  1143
      ||||||||||||||||| |||||||| ||||||||||||| |||| ||||
seq2  TAAGCGTGGCAGAGGAC-TCCTTGCTTGGAGCCTGGAGAAGGAGAGTGAA  1141

seq1  CT  1145
      ||
seq2  CT  1143