BAC Information

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BAC

Clone NameB6Ng01-057D21
Chromosome6 (Build37)
Map Location 35,822,604 - 35,930,721
singlet/doubletdoublet
Overlap geneLOC100039327
Upstream geneTmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
Downstream gene9330158H04Rik, Chrm2, EG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057D21.bB6Ng01-057D21.g
ACCDH879170DH879171
length1,019921
definitionDH879170|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D21, 5' end.DH879171|Mus musculus domesticus DNA, BAC clone: B6Ng01-057D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,822,604 - 35,823,624)(35,929,801 - 35,930,721)
sequence
gaattcatgaacatttcagcaagaaaagaagaaacagcaatcttccatgg
ctggacactatatattctgtatcttttcaacattttatctcacacaactt
gaacatgtgtcatttcagtatgaacagagatatctcactaaacaagattc
cagagtattctctgctatgtatggtcttatgttagttgttcctcaggctt
tgcggttagattttaatagtttggggttggttttaatcttttgtattttt
aagggggatatgttcgcttctttacagtcacattttctttttcaacaata
aggatatttatggaaatattcatttctatctaggctttttcatcaaaaag
tgtacataatgtaccttaattggtaatcatttctaaactacctggaattc
agttttgattagcttttttctttgagtgaaaggttcctggcatattctga
tagagcagtgaacatgtctggcagtgttccatatggtattatccagtatc
atgaccccaatcttagtgagtatgaaagtgccttgctgggtccacacaat
aaaagattcccccaggaccacatttctgaatcctgattctaagcaacaat
cactgtagtttaaaatctttttatttaaaaatatttcatttatgcatcta
agtgttttgcttgcatatatgtctatataccatgtgcatgctggcacctg
tagaggccaaaagagggcgctggatcccctagaactagaattataggcag
gactgagctgccatgtagctgctaggattcgaaccgagatcctctggaag
aacagtcagtgctcttaactactaagtcatgtttccagtccctaaatcaa
ttcttagacagtagcatttttattatagtctgaaattacttgtttcctcc
aaggagatagttgctttattaatgtgttagctataaactgaatttggctt
catatttaccatatattttaaattattaacaatatcagttttaaaaacga
aaagagaaatggcatagct
gaattccacctgcctctgtctcccgagtcctgggattaaaggcatgcacc
accacgcccagcttcttatacattttatatcttgagcaccttaaggagtc
ttttgcatcctacattattaagtagtttcctatatttttgccaaagtctt
acatcctggcctttcagattttctagaaaaaaattaccatttagtgcggt
gtggggtaggaatgcactcttggttttctccagaatgatggcaaaggttt
agcatctattttcccactgcccagcagtgttgcttctgctgtacatcaag
acgtcatgagtctggattccttttctaagctgctgatgctgcttcatgag
tcagatgaccagcaagcaggaacatcaggacgtcaggtactgcagggcac
atccttgcatctttaaaagcaggtccatcagcatctttatcaacacttta
tctctttgttctcctccaatttgtagcagggataaagtaaaatgagatca
atttaaaaatagacttttgcttaatatgtagacagatatcttctaggtat
catgactttcaatctaccaacgtctcacattccttcatgattgacattct
ccttagtgtctcaaaaagttctatacttttcactaatgatcttatttttg
cttattcctagatatactttatatttgtactattgtaaaaattgtcactt
tttatttaattttaaacaaataaatattaattttaaacaattatttaagt
tgtttccatttgttgataataaatacaaattcagctaaatatactgtgac
tcatgcttagccaaacagtttctaatattagggaattattagggtatgtc
atttagtctttgtactgctctgaccataataccttgtatatatagtttgt
gtgtgtgtgtgtgtatgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_35822604_35823624
seq2: B6Ng01-057D21.b_42_1060

seq1  GAATTCATGAACATTTCAGCAAGAAAAGAAGAAACAGCAATCTTCCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAACATTTCAGCAAGAAAAGAAGAAACAGCAATCTTCCATGG  50

seq1  CTGGACACTATATATTCTGTATCTTTTCAACATTTTATCTCACACAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACACTATATATTCTGTATCTTTTCAACATTTTATCTCACACAACTT  100

seq1  GAACATGTGTCATTTCAGTATGAACAGAGATATCTCACTAAACAAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTGTCATTTCAGTATGAACAGAGATATCTCACTAAACAAGATTC  150

seq1  CAGAGTATTCTCTGCTATGTATGGTCTTATGTTAGTTGTTCCTCAGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTATTCTCTGCTATGTATGGTCTTATGTTAGTTGTTCCTCAGGCTT  200

seq1  TGCGGTTAGATTTTAATAGTTTGGGGTTGGTTTTAATCTTTTGTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTTAGATTTTAATAGTTTGGGGTTGGTTTTAATCTTTTGTATTTTT  250

seq1  AAGGGGGATATGTTCGCTTCTTTACAGTCACATTTTCTTTTTCAACAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGATATGTTCGCTTCTTTACAGTCACATTTTCTTTTTCAACAATA  300

seq1  AGGATATTTATGGAAATATTCATTTCTATCTAGGCTTTTTCATCAAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTTATGGAAATATTCATTTCTATCTAGGCTTTTTCATCAAAAAG  350

seq1  TGTACATAATGTACCTTAATTGGTAATCATTTCTAAACTACCTGGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATAATGTACCTTAATTGGTAATCATTTCTAAACTACCTGGAATTC  400

seq1  AGTTTTGATTAGCTTTTTTCTTTGAGTGAAAGGTTCCTGGCATATTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGATTAGCTTTTTTCTTTGAGTGAAAGGTTCCTGGCATATTCTGA  450

seq1  TAGAGCAGTGAACATGTCTGGCAGTGTTCCATATGGTATTATCCAGTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCAGTGAACATGTCTGGCAGTGTTCCATATGGTATTATCCAGTATC  500

seq1  ATGACCCCAATCTTAGTGAGTATGAAAGTGCCTTGCTGGGTCCACACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCCAATCTTAGTGAGTATGAAAGTGCCTTGCTGGGTCCACACAAT  550

seq1  AAAAGATTCCCCCAGGACCACATTTCTGAATCCTGATTCTAAGCAACAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTCCCCCAGGACCACATTTCTGAATCCTGATTCTAAGCAACAAT  600

seq1  CACTGTAGTTTAAAATCTTTTTATTTAAAAATATTTCATTTATGCATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTAGTTTAAAATCTTTTTATTTAAAAATATTTCATTTATGCATCTA  650

seq1  AGTGTTTTGCTTGCATATATGTCTATATACCATGTGCATGCTGGCACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGCTTGCATATATGTCTATATACCATGTGCATGCTGGCACCTG  700

seq1  TAGAGGCCAAAAGAGGGCGCTGGATCCCCTAGAACTAGAATTATAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGCCAAAAGAGGGCGCTGGATCCCCTAGAACTAGAATTATAGGCAG  750

seq1  GACTGAGCTGCCATGTAGCTGCTAGGATTCGAACCGAGATCCTCTGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGCTGCCATGTAGCTGCTAGGATTCGAACCGAGATCCTCTGGAAG  800

seq1  AACAGTCAGTGCTCTTAACTACTAAGTCATGTTTCCAGTCCCTAAATCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAGTGCTCTTAACTACTAAGTCATGTTTCCAGTCCCTAAATCAA  850

seq1  TTCTTAGACAGTAGCATTTTTATTATAGTCTGAAATTACTTGTTTCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGACAGTAGCATTTTTATTATAGTCTGAAATTACTTGTTTCCTCC  900

seq1  AAGGAGATAGTTGCTTTATTAATGTGTTAGCTATTAAACTGAATTTGGCT  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGGAGATAGTTGCTTTATTAATGTGTTAGCTA-TAAACTGAATTTGGCT  949

seq1  TCATATTTACCATATATTTTACATTATTAACAATATCAGTTTTTAAAAAC  1000
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TCATATTTACCATATATTTTAAATTATTAACAATATCAG-TTTTAAAAAC  998

seq1  AGAGAGAGAAAAGGCATAGCT  1021
        | ||||||| |||||||||
seq2  GAAAAGAGAAATGGCATAGCT  1019

seq1: chr6_35929801_35930721
seq2: B6Ng01-057D21.g_68_988 (reverse)

seq1  CATACATACACACACACACACACAAACTATATATACAAGGTATTATGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATACACACACACACACACAAACTATATATACAAGGTATTATGGTC  50

seq1  AGAGCAGTACAAAGACTAAATGACATACCCTAATAATTCCCTAATATTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTACAAAGACTAAATGACATACCCTAATAATTCCCTAATATTAG  100

seq1  AAACTGTTTGGCTAAGCATGAGTCACAGTATATTTAGCTGAATTTGTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTGGCTAAGCATGAGTCACAGTATATTTAGCTGAATTTGTATT  150

seq1  TATTATCAACAAATGGAAACAACTTAAATAATTGTTTAAAATTAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCAACAAATGGAAACAACTTAAATAATTGTTTAAAATTAATATTT  200

seq1  ATTTGTTTAAAATTAAATAAAAAGTGACAATTTTTACAATAGTACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAAAATTAAATAAAAAGTGACAATTTTTACAATAGTACAAATA  250

seq1  TAAAGTATATCTAGGAATAAGCAAAAATAAGATCATTAGTGAAAAGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTATATCTAGGAATAAGCAAAAATAAGATCATTAGTGAAAAGTATA  300

seq1  GAACTTTTTGAGACACTAAGGAGAATGTCAATCATGAAGGAATGTGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTGAGACACTAAGGAGAATGTCAATCATGAAGGAATGTGAGAC  350

seq1  GTTGGTAGATTGAAAGTCATGATACCTAGAAGATATCTGTCTACATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGATTGAAAGTCATGATACCTAGAAGATATCTGTCTACATATTA  400

seq1  AGCAAAAGTCTATTTTTAAATTGATCTCATTTTACTTTATCCCTGCTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAGTCTATTTTTAAATTGATCTCATTTTACTTTATCCCTGCTACA  450

seq1  AATTGGAGGAGAACAAAGAGATAAAGTGTTGATAAAGATGCTGATGGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGGAGAACAAAGAGATAAAGTGTTGATAAAGATGCTGATGGACC  500

seq1  TGCTTTTAAAGATGCAAGGATGTGCCCTGCAGTACCTGACGTCCTGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTAAAGATGCAAGGATGTGCCCTGCAGTACCTGACGTCCTGATGT  550

seq1  TCCTGCTTGCTGGTCATCTGACTCATGAAGCAGCATCAGCAGCTTAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCTTGCTGGTCATCTGACTCATGAAGCAGCATCAGCAGCTTAGAAA  600

seq1  AGGAATCCAGACTCATGACGTCTTGATGTACAGCAGAAGCAACACTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCCAGACTCATGACGTCTTGATGTACAGCAGAAGCAACACTGCTG  650

seq1  GGCAGTGGGAAAATAGATGCTAAACCTTTGCCATCATTCTGGAGAAAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGGGAAAATAGATGCTAAACCTTTGCCATCATTCTGGAGAAAACC  700

seq1  AAGAGTGCATTCCTACCCCACACCGCACTAAATGGTAATTTTTTTCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGCATTCCTACCCCACACCGCACTAAATGGTAATTTTTTTCTAGA  750

seq1  AAATCTGAAAGGCCAGGATGTAAGACTTTGGCAAAAATATAGGAAACTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGAAAGGCCAGGATGTAAGACTTTGGCAAAAATATAGGAAACTAC  800

seq1  TTAATAATGTAGGATGCAAAAGACTCCTTAAGGTGCTCAAGATATAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAATGTAGGATGCAAAAGACTCCTTAAGGTGCTCAAGATATAAAAT  850

seq1  GTATAAGAAGCTGGGCGTGGTGGTGCATGCCTTTAATCCCAGGACTCGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGAAGCTGGGCGTGGTGGTGCATGCCTTTAATCCCAGGACTCGGG  900

seq1  AGACAGAGGCAGGTGGAATTC  921
      |||||||||||||||||||||
seq2  AGACAGAGGCAGGTGGAATTC  921