BAC Information

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BAC

Clone NameB6Ng01-057I04
Chromosome6 (Build37)
Map Location 72,204,955 - 72,346,124
singlet/doubletdoublet
Overlap geneSftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8
Upstream geneSmyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8
Downstream geneGgcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10, Dnahc6, Suclg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057I04.bB6Ng01-057I04.g
ACCDH879359DH879360
length9721,120
definitionDH879359|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I04, 5' end.DH879360|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,204,955 - 72,205,932)(72,344,977 - 72,346,124)
sequence
gaattctccaaaggctttccatctggagtcaacaccaccctcacagctgc
tccctgcgcggtggcccttgccagtcttgggctggatcgagtgactgtcc
ctctggaagccaagcctgggaccggtttgggatgaacagattcaaagata
acttttctcatagaagaagcttaaggcaggagttcactgaagggtggggt
ggtacttatggggtgaaagagaagcatgggagaagttgcttcccttccct
acccccatgtctgtctctctgtctttctctctttccccacactgtctgct
atatactatggcttctgtgtctttaagttttacggtatcatgaatgtcct
ctgtccacctggtaaattccagttagccttcaagaagccaactcagatct
ccctgtcactggcctcatgctctgcctctctcctcacgaacagattcatt
aaagcccccagcagctccacacacaggcatggcatgcccactgctgagtt
agcagatggcctcatagccacctgtctctcaaccccgccagccagcaggg
gctcaagggcaaccgaggtggtcagacagagcccaggaacggcttgtcct
ctttagacatgtgaccaccagggcctgtccttaggggttacagacaggta
tgagtatatcaccctggtgacgtgtttgtccttgctgaggatacatttgg
gacgttggaatgcattgaaataggcctttatttggcaagggatgtagctc
cttagtagagctctactcagcattgatccttagttttaggtcccaagtca
agcataaaactaggtaacacttgggagtagatgaaggagaatcagaactt
taggtcatccttggctacatagctcattcaagatcagcctgagctacaag
agattccatctcaaaataaatattttttaaaagatgttatttatataatc
tctccacaactttcatccatta
gaattccagacatagagaaatatgagaaattcccacaggtccaagaagtt
aaggagccattaagcaaaaatgggtgcctggggctgggcatgggtagaac
tgaaggggacgggcatgggtagggctgaagctgcctcacgagggcttggg
aaagtgggtgaacacttggattgcctgcatagggaggctggctttagcct
ggaggtaaggtgagtttactcaaatgtgtttggggaacacaacaagcact
ttccaaaggaatggatgggaccagacaggtgagtttggaaatggatgcat
ctagagaagagaccgtgctggcatccactaggaagctggagttggtgaca
agaaaaaaaaaaaaaaaaaaaaacatcgtaaaatgacccagaatgcataa
agatatggaacaactcgagctgtggtgcggggatcaaagctggacctggt
caggcgaggtgagaatcacagaacgacagccgggcccttacttttatgct
tgcttgattttgtgttgtgtgctggctcacttggtagcccaggctagctc
tcctgcctcaccactccacccttcagttccagctttacaggtatgtgtga
ccatgtctggcaccggcttccttgttcttatgttgtttaatttttttccc
caagatagttttatttttaaatgtcaagcaaaaaacaaggctaccctaca
aagcagcacaacaaaagcatgtaaaggccaccaagagccccaaatgccgc
agacccaccacgtttctcctgaacaaaaggccttcctgcacggcattcag
gggactgagagcttgtcacccaaaggagactatgctttttggttccccca
acatctagtctaaagcgcaattgtttgggtgaaattgtgagatagactca
ctctctcacttcagcctggaactcactatatagcctaggctagcctccag
ctcaagtgatccgtttccagtgtgatcaatggctagaataaaagcatgaa
ccatacatccatttctctttgttcatttaagatgaagtctgaatataacc
cagccggctgaaacagcgcctctcaaacgaaatccccttcgagccctatc
agttctcctttttttcttac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72204955_72205932
seq2: B6Ng01-057I04.b_46_1017

seq1  GAATTCTCCAAAGGCTTTCCATCTGGAGTCAACACCACCCTCACAGCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAAAGGCTTTCCATCTGGAGTCAACACCACCCTCACAGCTGC  50

seq1  TCCCTGCGCGGTGGCCCTTGCCAGTCTTGGGCTGGATCGAGTGACTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCGCGGTGGCCCTTGCCAGTCTTGGGCTGGATCGAGTGACTGTCC  100

seq1  CTCTGGAAGCCAAGCCTGGGACCGGTTTGGGATGAACAGATTCAAAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAGCCAAGCCTGGGACCGGTTTGGGATGAACAGATTCAAAGATA  150

seq1  ACTTTTCTCATAGAAGAAGCTTAAGGCAGGAGTTCACTGAAGGGTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTCATAGAAGAAGCTTAAGGCAGGAGTTCACTGAAGGGTGGGGT  200

seq1  GGTACTTATGGGGTGAAAGAGAAGCATGGGAGAAGTTGCTTCCCTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTATGGGGTGAAAGAGAAGCATGGGAGAAGTTGCTTCCCTTCCCT  250

seq1  ACCCCCATGTCTGTCTCTCTGTCTTTCTCTCTTTCCCCACACTGTCTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCATGTCTGTCTCTCTGTCTTTCTCTCTTTCCCCACACTGTCTGCT  300

seq1  ATATACTATGGCTTCTGTGTCTTTAAGTTTTACGGTATCATGAATGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTATGGCTTCTGTGTCTTTAAGTTTTACGGTATCATGAATGTCCT  350

seq1  CTGTCCACCTGGTAAATTCCAGTTAGCCTTCAAGAAGCCAACTCAGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACCTGGTAAATTCCAGTTAGCCTTCAAGAAGCCAACTCAGATCT  400

seq1  CCCTGTCACTGGCCTCATGCTCTGCCTCTCTCCTCACGAACAGATTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCACTGGCCTCATGCTCTGCCTCTCTCCTCACGAACAGATTCATT  450

seq1  AAAGCCCCCAGCAGCTCCACACACAGGCATGGCATGCCCACTGCTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCCAGCAGCTCCACACACAGGCATGGCATGCCCACTGCTGAGTT  500

seq1  AGCAGATGGCCTCATAGCCACCTGTCTCTCAACCCCGCCAGCCAGCAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATGGCCTCATAGCCACCTGTCTCTCAACCCCGCCAGCCAGCAGGG  550

seq1  GCTCAAGGGCAACCGAGGTGGTCAGACAGAGCCCAGGAACGGCTTGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGGCAACCGAGGTGGTCAGACAGAGCCCAGGAACGGCTTGTCCT  600

seq1  CTTTAGACATGTGACCACCAGGGCCTGTCCTTAGGGGTTACAGACAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACATGTGACCACCAGGGCCTGTCCTTAGGGGTTACAGACAGGTA  650

seq1  TGAGTATATCACCCTGGTGACGTGTTTGTCCTTGCTGAGGATACATTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATATCACCCTGGTGACGTGTTTGTCCTTGCTGAGGATACATTTGG  700

seq1  GACGTTGGAATGCATTGAAATAGGCCTTTATTTGGCAAGGGATGTAGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTGGAATGCATTGAAATAGGCCTTTATTTGGCAAGGGATGTAGCTC  750

seq1  CTTAGTAGAGCTCTACTCAGCATTGATCCTTAGGTTTTAGGTCCCAAGTC  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTTAGTAGAGCTCTACTCAGCATTGATCCTTA-GTTTTAGGTCCCAAGTC  799

seq1  AAGCATAAAACTAGGTAACACTTGGGAGTTAGATGAAGGAGAATCAGAAC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGCATAAAACTAGGTAACACTTGGGAG-TAGATGAAGGAGAATCAGAAC  848

seq1  TTTAGGTCATCCTTGGCTACATAGCTCATTCAAGATCAGCCTGTGCTACA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTAGGTCATCCTTGGCTACATAGCTCATTCAAGATCAGCCTGAGCTACA  898

seq1  AGAGATTCCATCTCAAAAATAAATATTTTTTAAAAGATGTTTATTTATAA  950
      |||||||||||||| |||||||||||||||||||||||| |||||||| |
seq2  AGAGATTCCATCTC-AAAATAAATATTTTTTAAAAGATG-TTATTTAT-A  945

seq1  TAATCTCTCTACAACTTTCCATCCATTA  978
      ||||||||| |||||||| |||||||||
seq2  TAATCTCTCCACAACTTT-CATCCATTA  972

seq1: chr6_72344977_72346124
seq2: B6Ng01-057I04.g_66_1185 (reverse)

seq1  GTAAGAAAAAAAAAGAGAGAAAATGGAATGAGGAACTAGGAAAGAGGGAT  50
      ||||||||||||    ||| || ||  ||  ||  || |  ||| |||||
seq2  GTAAGAAAAAAA---GGAG-AACTG--ATAGGG--CTCG--AAG-GGGAT  39

seq1  ATTGCAGTCTGAAGAGGCAGCTAGTTTCAGCTGGCTGGGTTATATGTCAG  100
       |    || || |||||| ||| |||||||| ||||||||||||| ||| 
seq2  TT---CGTTTG-AGAGGC-GCT-GTTTCAGCCGGCTGGGTTATAT-TCA-  81

seq1  GACTTCATCTCTAAAATGAACAAAGAGAAGTTGGATGTAATGGTTCATGC  150
      |||||||  ||| ||||||||||||||||  ||||||| |||||||||||
seq2  GACTTCA--TCTTAAATGAACAAAGAGAA-ATGGATGT-ATGGTTCATGC  127

seq1  TTTTAATTCTAGCAATTGATCAACACTGGAAACGGATCACTTTGAGCTGG  200
      |||| |||||||| ||||||| |||||||||||||||||| |||||||||
seq2  TTTT-ATTCTAGCCATTGATC-ACACTGGAAACGGATCAC-TTGAGCTGG  174

seq1  AGGCTAGCCTAGGCTATATAGTGAGTTCCAGGCTGGAGTGAGAGAGTGAG  250
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGCTAGCCTAGGCTATATAGTGAGTTCCAGGCTGAAGTGAGAGAGTGAG  224

seq1  TCTTATCTCACAATTTCAACCAAACAATTGCGCTTTAGACTAGATGTTGG  300
      || ||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TC-TATCTCACAATTTCACCCAAACAATTGCGCTTTAGACTAGATGTTGG  273

seq1  GGAGAACCAAAAAGCATAGTCTCCTTTGGGTGACAAGCTCTCAGTCCCCT  350
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-GAACCAAAAAGCATAGTCTCCTTTGGGTGACAAGCTCTCAGTCCCCT  322

seq1  GAATGCCGTGCAGGAAGGCCTTTTGTTCAGGAGAAACGTGGTGGGTCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCCGTGCAGGAAGGCCTTTTGTTCAGGAGAAACGTGGTGGGTCTGC  372

seq1  GGCATTTGGGGCTCTTGGTGGCCTTTACATGCTTTTGTTGTGCTGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGGGGCTCTTGGTGGCCTTTACATGCTTTTGTTGTGCTGCTTTG  422

seq1  TAGGGTAGCCTTGTTTTTTGCTTGACATTTAAAAATAAAACTATCTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAGCCTTGTTTTTTGCTTGACATTTAAAAATAAAACTATCTTGGG  472

seq1  GAAAAAAATTAAACAACATAAGAACAAGGAAGCCGGTGCCAGACATGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAATTAAACAACATAAGAACAAGGAAGCCGGTGCCAGACATGGTC  522

seq1  ACACATACCTGTAAAGCTGGAACTGAAGGGTGGAGTGGTGAGGCAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACCTGTAAAGCTGGAACTGAAGGGTGGAGTGGTGAGGCAGGAGA  572

seq1  GCTAGCCTGGGCTACCAAGTGAGCCAGCACACAACACAAAATCAAGCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGGGCTACCAAGTGAGCCAGCACACAACACAAAATCAAGCAAG  622

seq1  CATAAAAGTAAGGGCCCGGCTGTCGTTCTGTGATTCTCACCTCGCCTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTAAGGGCCCGGCTGTCGTTCTGTGATTCTCACCTCGCCTGAC  672

seq1  CAGGTCCAGCTTTGATCCCCGCACCACAGCTCGAGTTGTTCCATATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCAGCTTTGATCCCCGCACCACAGCTCGAGTTGTTCCATATCTTT  722

seq1  ATGCATTCTGGGTCATTTTACGATGTTTTTTTTTTTTTTTTTTTTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTCTGGGTCATTTTACGATGTTTTTTTTTTTTTTTTTTTTTCTTG  772

seq1  TCACCAACTCCAGCTTCCTAGTGGATGCCAGCACGGTCTCTTCTCTAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAACTCCAGCTTCCTAGTGGATGCCAGCACGGTCTCTTCTCTAGAT  822

seq1  GCATCCATTTCCAAACTCACCTGTCTGGTCCCATCCATTCCTTTGGAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCATTTCCAAACTCACCTGTCTGGTCCCATCCATTCCTTTGGAAAG  872

seq1  TGCTTGTTGTGTTCCCCAAACACATTTGAGTAAACTCACCTTACCTCCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTTGTGTTCCCCAAACACATTTGAGTAAACTCACCTTACCTCCAG  922

seq1  GCTAAAGCCAGCCTCCCTATGCAGGCAATCCAAGTGTTCACCCACTTTCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGCCAGCCTCCCTATGCAGGCAATCCAAGTGTTCACCCACTTTCC  972

seq1  CAAGCCCTCGTGAGGCAGCTTCAGCCCTACCCATGCCCGTCCCCTTCAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTCGTGAGGCAGCTTCAGCCCTACCCATGCCCGTCCCCTTCAGT  1022

seq1  TCTACCCATGCCCAGCCCCAGGCACCCATTTTTGCTTAATGGCTCCTTAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCATGCCCAGCCCCAGGCACCCATTTTTGCTTAATGGCTCCTTAA  1072

seq1  CTTCTTGGACCTGTGGGAATTTCTCATATTTCTCTATGTCTGGAATTC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGGACCTGTGGGAATTTCTCATATTTCTCTATGTCTGGAATTC  1120