BAC Information

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BAC

Clone NameB6Ng01-058A11
Chromosome6 (Build37)
Map Location 64,357,053 - 64,455,731
singlet/doubletdoublet
Overlap geneGrid2
Upstream genenone
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A11.bB6Ng01-058A11.g
ACCDH879721DH879722
length728948
definitionDH879721|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A11, 5' end.DH879722|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,357,053 - 64,357,779)(64,455,094 - 64,455,731)
sequence
gaattctcgctgtattttattggtaccattgttttatgtaggattagtat
gtattattgtaccatagcttgttaataggccatgtgcaaggtgatgatca
atggttcaatgtcagccttgaaggggatattgaataaagtagttttttca
tgtcagcattggtctggatactaattaacatttcagtgttgatttgaaat
atggaatggggagtgagcttattaaatatgcagattactcttcattgagt
aggggtgattattgacttgaaccacactttaagaatttatgaggcccttg
acaaattaagccaggtgattataagtaagatgaagtttaatgaggacaaa
taagtgataatttactttgtgtgtgtgtgtgtgtgtatgtgtgtaatagc
ttagatttaggggatgcagacagtttcagaataaaccatttgataatcac
aaatttgaactatgacattggtgtttctcaagaaaatgagaagtttcctg
tagtataaaattgtccaacaccttcaaagattagattggcctctttaata
cttgagaaaacaatgagtagctaatagcttcaaaaagtgatcaatagatt
ctggggataagaactgaaggaagatactttaaatcaacaagaaaaaggct
tcaaggatgaaaaaggaacaaagaatttactacctaaaagaaataccatg
atgtgggtaagtgacaaaaggcagactt
gaattcatttaaatacataagacttcagttttattgcctgtaaaatgagt
gtcataatataatctttgcagaattattaatgttaaatgcaatggaaagg
aattaaaaacacagtatggcatggtgccaccacatgccacgtaatatttc
tctaatggcagagaggcagatacagatggtgatggctaaatttattgcag
gatgtaggttaatgcaaatagaccttcatctacccctacagaagtcccaa
ttccagatagatcaaggtccgcaatcaatactaggtaccctgtagctgac
tgaagaaaaagtaggttaatagtcttgagctcattttcataggaaaagac
tttctgaacaggacacctataactcaggcgctaaggccaacaattaaatg
atactccatgaaactgaaaagcttctatacggcaaagcacaacatcatta
ggacaaagtagtagcctacagaatggaaaaaagatttttttttaccaagt
acaaatctgatagacgtttaatatctaaaatatataaacaattaaaagac
aggacatcaagaatacaagcaaagaattttaaaatggggtatagaaccag
agtactcaaaagatgatacatagatgcctaggataaacataagaaacatt
caacattctttctcaaggaaatgcaaatcaaaatgacattgggatttcat
tttctgccagtcgggatggcctagatcaataaaacaaatacagttcatgc
tggtgatgacagacaagggatactcacaagtttactggtgactaataaac
ttctgcagtaagactctgaaaaagtccagaaacttaaactggctgaatga
aagatgcacaaccatctattgttaggtgaggtgtggggcataggcacaag
atcaggccttagatgtggaaactagatgattaggggcatcagtaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_64357053_64357779
seq2: B6Ng01-058A11.b_37_764

seq1  GAATTCTCGCTGTATTTTATTGGTACCATTGTTTTATGTAGGATTAGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCTGTATTTTATTGGTACCATTGTTTTATGTAGGATTAGTAT  50

seq1  GTATTATTGTACCATAGCTTGTTAATAGGCCATGTGCAAGGTGATGATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATTGTACCATAGCTTGTTAATAGGCCATGTGCAAGGTGATGATCA  100

seq1  ATGGTTCAATGTCAGCCTTGAAGGGGATATTGAATAAAGTAGTTTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCAATGTCAGCCTTGAAGGGGATATTGAATAAAGTAGTTTTTTCA  150

seq1  TGTCAGCATTGGTCTGGATACTAATTAACATTTCAGTGTTGATTTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCATTGGTCTGGATACTAATTAACATTTCAGTGTTGATTTGAAAT  200

seq1  ATGGAATGGGGAGTGAGCTTATTAAATATGCAGATTACTCTTCATTGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATGGGGAGTGAGCTTATTAAATATGCAGATTACTCTTCATTGAGT  250

seq1  AGGGGTGATTATTGACTTGAACCACACTTTAAGAATTTATGAGGCCCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGATTATTGACTTGAACCACACTTTAAGAATTTATGAGGCCCTTG  300

seq1  ACAAATTAAGCCAGGTGATTATAAGTAAGATGAAGTTTAATGAGGACAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTAAGCCAGGTGATTATAAGTAAGATGAAGTTTAATGAGGACAAA  350

seq1  TAAGTGATAATTTACTTTGTGTGTGTGTGTGTGTGTATGTGTGTAATAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGATAATTTACTTTGTGTGTGTGTGTGTGTGTATGTGTGTAATAGC  400

seq1  TTAGATTTAGGGGATGCAGACAGTTTCAGAATAAACCATTTGATAATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTAGGGGATGCAGACAGTTTCAGAATAAACCATTTGATAATCAC  450

seq1  AAATTTGAACTATGACATTGGTGTTTCTCAAGAAAATGAGAAGTTTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGAACTATGACATTGGTGTTTCTCAAGAAAATGAGAAGTTTCCTG  500

seq1  TAGTATAAAATTGTCCAACACCTTCAAAGATTAGATTGGCCTCTTTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAAATTGTCCAACACCTTCAAAGATTAGATTGGCCTCTTTAATA  550

seq1  CTTGAGAAAACAATGAGTAGCTAATAGCTTCAAAAAGTGATCAATAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAAAACAATGAGTAGCTAATAGCTTCAAAAAGTGATCAATAGATT  600

seq1  CTGGGGATAAGAACTGAAGGAAGATACTTTAAATCAACAAGAAAAAGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGATAAGAACTGAAGGAAGATACTTTAAATCAACAAGAAAAAGGCT  650

seq1  TCAAGGATGAAAAAGGAACAAAGAATTTACTACCT-AAAGAAATACCATG  699
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCAAGGATGAAAAAGGAACAAAGAATTTACTACCTAAAAGAAATACCATG  700

seq1  ATGTGGGTAAGTGACAAAGGGCAGACTT  727
      |||||||||||||||||| |||||||||
seq2  ATGTGGGTAAGTGACAAAAGGCAGACTT  728

seq1: chr6_64455094_64455731
seq2: B6Ng01-058A11.g_373_1007 (reverse)

seq1  TGATGCCCCTAATCATCTTAGTTTCCACATCTAAGGCCTGATCTTGTGCC  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGATGCCCCTAATCATC-TAGTTTCCACATCTAAGGCCTGATCTTGTGCC  49

seq1  TATGCCCCACACCTCACCTAACAATAGATGGCTTGTGCATCTTTTCATTC  100
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  TATGCCCCACACCTCACCTAACAATAGATGG-TTGTGCATC-TTTCATTC  97

seq1  AGCCAGTTTAAGTTTCTGGACTTTTTCAGAGTCTTACTGCAGGAGTTTAT  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGCCAGTTTAAGTTTCTGGACTTTTTCAGAGTCTTACTGCAGAAGTTTAT  147

seq1  TAGTCACCAGTAAACTTGTGAGTATCCCTTGTCTGTCATCACCAGCATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCACCAGTAAACTTGTGAGTATCCCTTGTCTGTCATCACCAGCATGA  197

seq1  ACTGTATTTGTTTTATTGATCTAGGCCATCCCGACTGGCAGAAAATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTTGTTTTATTGATCTAGGCCATCCCGACTGGCAGAAAATGAAA  247

seq1  TCCCAATGTCATTTTGATTTGCATTTCCTTGAGTAAGAATGTTGAATGTT  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCCCAATGTCATTTTGATTTGCATTTCCTTGAGAAAGAATGTTGAATGTT  297

seq1  TCTTATGTTTATCCTAGGCATCTATGTATCATCTTTTGAGTACTCTGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGTTTATCCTAGGCATCTATGTATCATCTTTTGAGTACTCTGGTT  347

seq1  CTATACCCCATTTTAAAATTCTTTGCTTGTATTCTTGATGTCCTGTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCCATTTTAAAATTCTTTGCTTGTATTCTTGATGTCCTGTCTTT  397

seq1  TAATTGTTTATATATTTTAGATATTAAACGTCTATCAGATTTGTACTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTATATATTTTAGATATTAAACGTCTATCAGATTTGTACTTGG  447

seq1  TAAAAAAAAATCTTTTTTCCATTCTGTAGGCTACTACTTTGTCCTAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATCTTTTTTCCATTCTGTAGGCTACTACTTTGTCCTAATGA  497

seq1  TGTTGTGCTTTGCCGTATAGAAGCTTTTCAGTTTCATGGAGTATCATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTTTGCCGTATAGAAGCTTTTCAGTTTCATGGAGTATCATTTA  547

seq1  ATTGTTGGCCTTAGCGCCTGAGTTATAGGTGTCCTGTTCAGAAAGTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGCCTTAGCGCCTGAGTTATAGGTGTCCTGTTCAGAAAGTCTTT  597

seq1  TCCTATGAAAATGAGCTCAAGACTATTAACCTACTTTT  638
      ||||||||||||||||||||||||||||||||||||||
seq2  TCCTATGAAAATGAGCTCAAGACTATTAACCTACTTTT  635