BAC Information

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BAC

Clone NameB6Ng01-058A20
Chromosome6 (Build37)
Map Location 36,387,420 - 36,513,498
singlet/doubletdoublet
Overlap geneChrm2
Upstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
Downstream geneEG620863, LOC100039370, Ptn, LOC100039514, Dgki, EG665024, Creb3l2, Akr1d1, LOC665046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058A20.bB6Ng01-058A20.g
ACCDH879737DH879738
length1,085793
definitionDH879737|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A20, 5' end.DH879738|Mus musculus domesticus DNA, BAC clone: B6Ng01-058A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,387,420 - 36,388,509)(36,512,706 - 36,513,498)
sequence
gaattctgcaccttcccagaagatgcttcttgtttcttacccaatggtga
agagcctctcacctgccaggctccatggcatcctgctccctccattgact
tctgtggctgctgtgccctccaaatctgaattgtgagtcttcccagcatc
ttaggtggctttcatgtcttctgtcctagtacttcagccactcagtctct
gctcttccttgtctatgatgtttgtctttgtttcactttagacttccaaa
tctgggtgaattgttatcaccagtcatagctccaaagcttcttgaaagcc
tgaattaaaatgttgcctctcctgctcggactcccccactcttctctctc
gtgtccaattgtctgcatccttcaatagtgcacggaccttcactgccacc
accttcattactgtcttagcagcttctctcttcttctcttccttctctcc
tgggtttaaatgctagaactcaacaaaccattctcttcattacttcaaat
cagtttcccatctccttctaatgactgtagggagatagctttgcctacac
cacataggtggtgctggagaaacgtctcatccatacaaagcataagtgtt
ccgagtcatggcacccagcctcaagcaccccctgagagactctccttagt
cagcactaggatttgttctttcccaaagctcatttgctgaagcagcaacc
ttgcccccacccacaccaccacctacgctctgcttccttcgtgtaaccca
gaaatcctgtcgacgctacctcattaacatttctcaaaatccctccacat
ttgcacagctactgctttagttgagtcacatacctcttttccctacatct
ctcttcacaacacacacacccacacacacacaccacacacacacacacac
acacacacacacacatgtcagttgcatccctttggacctgttcatttctg
cccagtatagcatggaatcttagaagtgaaaagctgtgcaccagttaaga
tgttcttcttgtacttctaaggagaaaaaaaaaaaaaagaagccaactct
tttaattaacccctttctccacagaaacattaccc
gaattcacaggagtttctacatttccagccaacttcatagtgctcctatg
tgggtagaagagtgagagaggagagggagggaaagagagaaggaggggtg
gtttctactttatttttttcaaaattaatgctgtcttttattttttaatt
tttatgtttaattaattatttaatttacatcctgatcccctcctctcctc
ccagtccttctctctacctctccttcatccactactcctctctttgtctt
cagaaaagggaagactccaatggatgtcaaacaggcttggcatttgacac
tcttaatgataatttgctatacttgcacacaagagcctagcataattgtc
atcagagatgcttctcccagtaactgatggaaactaatgcagagacccac
agtcaaacattaagcagagcttgaagagtcttgcagaagaggggaagaaa
gaatggtttctatttccactggtgttgggagggtgtaaagacaaagctaa
actctcatttgcaacactttttaactttaaagctctctttatcttagtta
tattatacagttcaggatttatttatttgttaaactgggattttttaaaa
tactctgtatcctacgtgctagagacaacttgattttaaagcaacatgtc
aagtatgtaaaaataatgtttttaaatatatggtatttatttttatacct
atctgttataccttcaaccctgaaacttatatgttaaaatgcaaaccctt
ggtgtgattataataggtgtgggggcatttggtagggatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_36387420_36388509
seq2: B6Ng01-058A20.b_46_1130

seq1  GAATTCTGCACCTTCCCAGAAGATGCTTCTTGTTTCTTACCCAATGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACCTTCCCAGAAGATGCTTCTTGTTTCTTACCCAATGGTGA  50

seq1  AGAGCCTCTCACCTGCCAGGCTCCATGGCATCCTGCTCCCTCCATTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCTCACCTGCCAGGCTCCATGGCATCCTGCTCCCTCCATTGACT  100

seq1  TCTGTGGCTGCTGTGCCCTCCAAATCTGAATTGTGAGTCTTCCCAGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTGCTGTGCCCTCCAAATCTGAATTGTGAGTCTTCCCAGCATC  150

seq1  TTAGGTGGCTTTCATGTCTTCTGTCCTAGTACTTCAGCCACTCAGTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGGCTTTCATGTCTTCTGTCCTAGTACTTCAGCCACTCAGTCTCT  200

seq1  GCTCTTCCTTGTCTATGATGTTTGTCTTTGTTTCACTTTAGACTTCCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTCCTTGTCTATGATGTTTGTCTTTGTTTCACTTTAGACTTCCAAA  250

seq1  TCTGGGTGAATTGTTATCACCAGTCATAGCTCCAAAGCTTCTTGAAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGAATTGTTATCACCAGTCATAGCTCCAAAGCTTCTTGAAAGCC  300

seq1  TGAATTAAAATGTTGCCTCTCCTGCTCGGACTCCCCCACTCTTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTAAAATGTTGCCTCTCCTGCTCGGACTCCCCCACTCTTCTCTCTC  350

seq1  GTGTCCAATTGTCTGCATCCTTCAATAGTGCACGGACCTTCACTGCCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATTGTCTGCATCCTTCAATAGTGCACGGACCTTCACTGCCACC  400

seq1  ACCTTCATTACTGTCTTAGCAGCTTCTCTCTTCTTCTCTTCCTTCTCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCATTACTGTCTTAGCAGCTTCTCTCTTCTTCTCTTCCTTCTCTCC  450

seq1  TGGGTTTAAATGCTAGAACTCAACAAACCATTCTCTTCATTACTTCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAAATGCTAGAACTCAACAAACCATTCTCTTCATTACTTCAAAT  500

seq1  CAGTTTCCCATCTCCTTCTAATGACTGTAGGGAGATAGCTTTGCCTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCCCATCTCCTTCTAATGACTGTAGGGAGATAGCTTTGCCTACAC  550

seq1  CACATAGGTGGTGCTGGAGAAACGTCTCATCCATACAAAGCATAAGTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGGTGGTGCTGGAGAAACGTCTCATCCATACAAAGCATAAGTGTT  600

seq1  CCGAGTCATGGCACCCAGCCTCAAGCACCCCCTGAGAGACTCTCCTTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCATGGCACCCAGCCTCAAGCACCCCCTGAGAGACTCTCCTTAGT  650

seq1  CAGCACTAGGATTTGTTCTTTCCCAAAGCTCATTTGCTGAAGCAGCAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTAGGATTTGTTCTTTCCCAAAGCTCATTTGCTGAAGCAGCAACC  700

seq1  TTGCCCCCACCCACACCACCACCTACGCTCTGCTTCCTTCGTGTAACCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCCCACCCACACCACCACCTACGCTCTGCTTCCTTCGTGTAACCCA  750

seq1  GAAATCCTGTCGACGCTACCTCATTAACATTTCTCAAAATCCCTCCACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTGTCGACGCTACCTCATTAACATTTCTCAAAATCCCTCCACAT  800

seq1  TTGCACAGCTACTGCTTTAGTTGAGTCACATACCTCTTTTCCCTACATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAGCTACTGCTTTAGTTGAGTCACATACCTCTTTTCCCTACATCT  850

seq1  CTCTTCACAACACACACACCCACACACACACACCACACACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCACAACACACACACCCACACACACACACCACACACACACACACAC  900

seq1  ACACACACACACACATGTCAGGTTGCATCCCTTTGGACCTGTTCATTTCT  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACACACACACACACATGTCA-GTTGCATCCCTTTGGACCTGTTCATTTCT  949

seq1  GCCCAGTATAGCATGGAATCTTAGAAGTGAAAAGCTGTGCACAAGTTAAG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCCAGTATAGCATGGAATCTTAGAAGTGAAAAGCTGTGCACCAGTTAAG  999

seq1  ATGTTCTTCTTGTACTTCTTAGGGAGAAAAAAAAAAAAAAAGAAAGCCAA  1050
      |||||||||||||||||| || ||||||||||||||||||   ||||| |
seq2  ATGTTCTTCTTGTACTTC-TAAGGAGAAAAAAAAAAAAAA--GAAGCC-A  1045

seq1  ACTCTTTTATATAACCCTCTTCTGCCACAG-AACATTACCC  1090
      |||||||||  ||||||  |||| |||||| ||||||||||
seq2  ACTCTTTTAATTAACCCCTTTCT-CCACAGAAACATTACCC  1085

seq1: chr6_36512706_36513498
seq2: B6Ng01-058A20.g_66_858 (reverse)

seq1  CTAAATCCCTACCAAATGCCCCCACACCTATTATAATCACACCAAGGGTT  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCCTACCAAATGCCCCCACACCTATTATAATCACACCAAGGGTT  50

seq1  TGCATTTTAACATATAAGTTTCAGGGTTGAAGGTATAACAGATAGGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTTAACATATAAGTTTCAGGGTTGAAGGTATAACAGATAGGTATA  100

seq1  AAAATAAATACCATATATTTAAAAACATTATTTTTACATACTTGACATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATACCATATATTTAAAAACATTATTTTTACATACTTGACATGT  150

seq1  TGCTTTAAAATCAAGTTGTCTCTAGCACGTAGGATACAGAGTATTTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAAATCAAGTTGTCTCTAGCACGTAGGATACAGAGTATTTTAAA  200

seq1  AAATCCCAGTTTAACAAATAAATAAATCCTGAACTGTATAATATAACTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCAGTTTAACAAATAAATAAATCCTGAACTGTATAATATAACTAA  250

seq1  GATAAAGAGAGCTTTAAAGTTAAAAAGTGTTGCAAATGAGAGTTTAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGAGAGCTTTAAAGTTAAAAAGTGTTGCAAATGAGAGTTTAGCTT  300

seq1  TGTCTTTACACCCTCCCAACACCAGTGGAAATAGAAACCATTCTTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTACACCCTCCCAACACCAGTGGAAATAGAAACCATTCTTTCTTC  350

seq1  CCCTCTTCTGCAAGACTCTTCAAGCTCTGCTTAATGTTTGACTGTGGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGCAAGACTCTTCAAGCTCTGCTTAATGTTTGACTGTGGGTC  400

seq1  TCTGCATTAGTTTCCATCAGTTACTGGGAGAAGCATCTCTGATGACAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATTAGTTTCCATCAGTTACTGGGAGAAGCATCTCTGATGACAATT  450

seq1  ATGCTAGGCTCTTGTGTGCAAGTATAGCAAATTATCATTAAGAGTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGGCTCTTGTGTGCAAGTATAGCAAATTATCATTAAGAGTGTCAA  500

seq1  ATGCCAAGCCTGTTTGACATCCATTGGAGTCTTCCCTTTTCTGAAGACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAAGCCTGTTTGACATCCATTGGAGTCTTCCCTTTTCTGAAGACAA  550

seq1  AGAGAGGAGTAGTGGATGAAGGAGAGGTAGAGAGAAGGACTGGGAGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGAGTAGTGGATGAAGGAGAGGTAGAGAGAAGGACTGGGAGGAGA  600

seq1  GGAGGGGATCAGGATGTAAATTAAATAATTAATTAAACATAAAAATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGATCAGGATGTAAATTAAATAATTAATTAAACATAAAAATTAAA  650

seq1  AAATAAAAGACAGCATTAATTTTGAAAAAAATAAAGTAGAAACCACCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAGACAGCATTAATTTTGAAAAAAATAAAGTAGAAACCACCCCT  700

seq1  CCTTCTCTCTTTCCCTCCCTCTCCTCTCTCACTCTTCTACCCACATAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCTCTTTCCCTCCCTCTCCTCTCTCACTCTTCTACCCACATAGGA  750

seq1  GCACTATGAAGTTGGCTGGAAATGTAGAAACTCCTGTGAATTC  793
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATGAAGTTGGCTGGAAATGTAGAAACTCCTGTGAATTC  793