BAC Information

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BAC

Clone NameB6Ng01-058N04
Chromosome6 (Build37)
Map Location 149,266,712 - 149,373,987
singlet/doubletdoublet
Overlap gene2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1
Upstream geneTmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik
Downstream geneLOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058N04.bB6Ng01-058N04.g
ACCDH880295DH880296
length1,1131,153
definitionDH880295|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N04, 5' end.DH880296|Mus musculus domesticus DNA, BAC clone: B6Ng01-058N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,266,712 - 149,267,825)(149,372,830 - 149,373,987)
sequence
gaattcaggatttgtcccagggcagacagcaggaaagtgctgtacctaga
caaggaatgaaaacaaaatccctcacaatgtgaggtaatacgatggtgtg
ttaactaattctttcctactgtcagccttcctggggactcaggacccagc
ttcaaagtatagctctttggccaatggagtcctttgaacgaaaggagaaa
agggacctctaatgtcagtctctctccactcttctcatcctcctgtctct
aaactccttttcatgaagccaaccacagatgtggaaaggctattctgccc
tctaccctctgcttctttgtaagaattggctataagggttcctctgacct
gtgtaggattgccagcctcactcacagaggttcttgccccaaacccagag
gaaagtaccacaaggagaccaagaaaaagcagacagacaagtgtggctga
attttccatatgtccactcactactacctttttatctcatcattttttta
aagattttttaaagatttatttattatatgtaagtacactgtagctgtct
tcagacactccagaagagggtgtcatatctcattacggatggttgtgagc
cacgatgtggttgctgggatttgaactcaggaccttcagaaaagtagtca
gtgctcttaactgttgagccatctctccaggcccttatctcatcattttt
taagttaaattagtttaccctatgtagatgggtgttttgtccacatgcac
cgtgtgaggccagaaaagtacattggatctcttgggactggagtaacaga
tggtttctggaaattgaacttgggtactctagaagaccacctagttctta
actgctgagctatctctccagccctctctctaatcacatgtctgcataat
tgtttattctttaaatctaaacttgaaaatggatagtttccattaatctt
cgttctttagaagtcttcatttctgaagtttcctgtcacataaaaatgtg
ggttacatttattattactattttttaatgtctttcttagtggttctgga
gatttctgatatattcactcagcgaacatgactgggacatcctttaacct
cctcaactcagct
gaattcccattctattgtttctgaactacaaaatgttaaacactgatgag
atatgtagatgtgctaaatcattcttagctcatatatttaataggcatgt
gttgatcacttaagttgctaggcccacgtttggggagaggagggatcaag
acaagggtcactggcttcaaaaatttacaagaagggtgaataaaaaggaa
agaaaaccaatatatccaggatacacaggtcagttcgattcaactttttc
atgggcattcaaagttcaagatttcatttttgccacattacatactttaa
cttaataataaaaatacaacattgttcaaaattggacatcagaataaaaa
taactaaaaattgggaataagctagataaagtcttaaataattctactct
cttcattttaagcttgtcttttattaagtgagtatacagaagtcattaaa
ctattcttgtttccattttaagtctccatgataaactggcagatggaaca
ccttatgttcacaagaggaaagccaagtacttagaaaggtaacttaatca
cagaaaagagggtaagtcaaaagaaagggttctggactgttgtgccccta
gaaggttagcagataattggattcaaaaggctttcacagaattataaaat
acccagtgtaacattctccagtatgctttcctttctcagtgaagaaaaca
tgcatgctctgaggaagattttagttttgtagaaagactgtttctaatca
gacttaaaggcatattatttcctctagtatgtatcaagtttaaaggtatg
atatactatgttttacctataagaaagatattttgagtgaaaagataata
tatttctatatatcatacacacgtcaacaaaactgaagactacaggtaaa
ttccagcatttgtcttaatttatctttccttttatctatgtgtaggtggc
cttcgatactttgtagattcttcttttacccacactttaccctcctccca
gtgccctggttttaccacctaaccctaggataggacagcaccagggatag
aagggggaagcagaatttgagcctatttcccttgtttcttcttgaccatg
gctactaacaaacctgaaccacctacttaatgactgcaaaacatgtcttc
tgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_149266712_149267825
seq2: B6Ng01-058N04.b_47_1159

seq1  GAATTCAGGATTTGTCCCAGGGCAGACAGCAGGAAAGTGCTGTACCTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATTTGTCCCAGGGCAGACAGCAGGAAAGTGCTGTACCTAGA  50

seq1  CAAGGAATGAAAACAAAATCCCTCACAATGTGAGGTAATACGATGGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATGAAAACAAAATCCCTCACAATGTGAGGTAATACGATGGTGTG  100

seq1  TTAACTAATTCTTTCCTACTGTCAGCCTTCCTGGGGACTCAGGACCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAATTCTTTCCTACTGTCAGCCTTCCTGGGGACTCAGGACCCAGC  150

seq1  TTCAAAGTATAGCTCTTTGGCCAATGGAGTCCTTTGAACGAAAGGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGTATAGCTCTTTGGCCAATGGAGTCCTTTGAACGAAAGGAGAAA  200

seq1  AGGGACCTCTAATGTCAGTCTCTCTCCACTCTTCTCATCCTCCTGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACCTCTAATGTCAGTCTCTCTCCACTCTTCTCATCCTCCTGTCTCT  250

seq1  AAACTCCTTTTCATGAAGCCAACCACAGATGTGGAAAGGCTATTCTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTTTCATGAAGCCAACCACAGATGTGGAAAGGCTATTCTGCCC  300

seq1  TCTACCCTCTGCTTCTTTGTAAGAATTGGCTATAAGGGTTCCTCTGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCTCTGCTTCTTTGTAAGAATTGGCTATAAGGGTTCCTCTGACCT  350

seq1  GTGTAGGATTGCCAGCCTCACTCACAGAGGTTCTTGCCCCAAACCCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGGATTGCCAGCCTCACTCACAGAGGTTCTTGCCCCAAACCCAGAG  400

seq1  GAAAGTACCACAAGGAGACCAAGAAAAAGCAGACAGACAAGTGTGGCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTACCACAAGGAGACCAAGAAAAAGCAGACAGACAAGTGTGGCTGA  450

seq1  ATTTTCCATATGTCCACTCACTACTACCTTTTTATCTCATCATTTTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCATATGTCCACTCACTACTACCTTTTTATCTCATCATTTTTTTA  500

seq1  AAGATTTTTTAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTAAAGATTTATTTATTATATGTAAGTACACTGTAGCTGTCT  550

seq1  TCAGACACTCCAGAAGAGGGTGTCATATCTCATTACGGATGGTTGTGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACTCCAGAAGAGGGTGTCATATCTCATTACGGATGGTTGTGAGC  600

seq1  CACGATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAAAGTAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGTGGTTGCTGGGATTTGAACTCAGGACCTTCAGAAAAGTAGTCA  650

seq1  GTGCTCTTAACTGTTGAGCCATCTCTCCAGGCCCTTATCTCATCATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTTAACTGTTGAGCCATCTCTCCAGGCCCTTATCTCATCATTTTT  700

seq1  TAAGTTAAATTAGTTTACCCTATGTAGATGGGTGTTTTGTCCACATGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAATTAGTTTACCCTATGTAGATGGGTGTTTTGTCCACATGCAC  750

seq1  CGTGTGAGGCCAGAAAAGTACATTGGATCTCTTGGGACTGGAGTAACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGAGGCCAGAAAAGTACATTGGATCTCTTGGGACTGGAGTAACAGA  800

seq1  TGGTTTCTGGAAATTGAACTTGGGTACTCTAGAAGACCACCTAGTTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGGAAATTGAACTTGGGTACTCTAGAAGACCACCTAGTTCTTA  850

seq1  ACTGCTGAGCTATCTCTCCAGCCCTCTCTCTAATCACATGTCTGCATAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCTATCTCTCCAGCCCTCTCTCTAATCACATGTCTGCATAAT  900

seq1  TGTTTATTCTTTAAATCTAAACTTGAAAATGGATAGTTTCCATTAATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTCTTTAAATCTAAACTTGAAAATGGATAGTTTCCATTAATCTT  950

seq1  CGTTCTTTAG-AGTCTTCATTTCTGAAGTTTCCTGTCACATAAAAATGTT  999
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CGTTCTTTAGAAGTCTTCATTTCTGAAGTTTCCTGTCACATAAAAATGTG  1000

seq1  GGTTACATTTATTATTACTATTTTTTTAAATGTCTTTCTTAGT-GTTCT-  1047
      ||||||||||||||||||||||||||  ||||||||||||||| ||||| 
seq2  GGTTACATTTATTATTACTATTTTTT--AATGTCTTTCTTAGTGGTTCTG  1048

seq1  GAGATTTCTGATAATATTCACTCAGCAAACATTGACT-GGACATTCTTTA  1096
      |||||||||||| ||||||||||||| |||| ||||| |||||| |||||
seq2  GAGATTTCTGAT-ATATTCACTCAGCGAACA-TGACTGGGACATCCTTTA  1096

seq1  CCCTCCTTCAACTCAGCT  1114
       ||||| |||||||||||
seq2  ACCTCC-TCAACTCAGCT  1113

seq1: chr6_149372830_149373987
seq2: B6Ng01-058N04.g_68_1220 (reverse)

seq1  GCAGAAG-CATAGTTTTGCCAGTCATTTAGGTAGGTTGGTTTCAGTTTGT  49
      ||||||| ||| |||||| |||||| ||| ||||| |||||   ||||||
seq2  GCAGAAGACAT-GTTTTG-CAGTCA-TTAAGTAGG-TGGTTCAGGTTTGT  46

seq1  TAGTAGCCATGGTCAAAGAAGAAACAAAGGGAAAATAGGCTCAAATTCTG  99
      |||||||||||||| ||||||||||||  || ||||||||||||||||||
seq2  TAGTAGCCATGGTC-AAGAAGAAACAA--GGGAAATAGGCTCAAATTCTG  93

seq1  CTTCCCCC-TCTATCCTTGTTGCTGTCCTAT-CTAGTGTTAGTGGGTAAA  147
      |||||||| ||||||| || ||||||||||| |||| |||||  ||||||
seq2  CTTCCCCCTTCTATCCCTGGTGCTGTCCTATCCTAGGGTTAGGTGGTAAA  143

seq1  ACCAGGGCACTGGGAGGAGGGTAAAGTGTGGGTAAAAGAAGAATCTACAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCACTGGGAGGAGGGTAAAGTGTGGGTAAAAGAAGAATCTACAA  193

seq1  AGTATCGAAGGCCACCTACACATAAGATAAAAGGAAAGATAAATTAAGAC  247
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGTATCGAAGGCCACCTACACAT-AGATAAAAGGAAAGATAAATTAAGAC  242

seq1  AAATGCTGGAATTTACCTGTAGTCTTCAGTTTTGTTGACGTGTGTATGAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGAATTTACCTGTAGTCTTCAGTTTTGTTGACGTGTGTATGAT  292

seq1  ATATAGAAATATATTATCTTTTCACTCAAAATATCTTTCTTATAGGTAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGAAATATATTATCTTTTCACTCAAAATATCTTTCTTATAGGTAAA  342

seq1  ACATAGTATATCATACCTTTAAACTTGATACATACTAGAGGAAATAATAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTATATCATACCTTTAAACTTGATACATACTAGAGGAAATAATAT  392

seq1  GCCTTTAAGTCTGATTAGAAACAGTCTTTCTACAAAACTAAAATCTTCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAAGTCTGATTAGAAACAGTCTTTCTACAAAACTAAAATCTTCCT  442

seq1  CAGAGCATGCATGTTTTCTTCACTGAGAAAGGAAAGCATACTGGAGAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATGCATGTTTTCTTCACTGAGAAAGGAAAGCATACTGGAGAATG  492

seq1  TTACACTGGGTATTTTATAATTCTGTGAAAGCCTTTTGAATCCAATTATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGGGTATTTTATAATTCTGTGAAAGCCTTTTGAATCCAATTATC  542

seq1  TGCTAACCTTCTAGGGGCACAACAGTCCAGAACCCTTTCTTTTGACTTAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACCTTCTAGGGGCACAACAGTCCAGAACCCTTTCTTTTGACTTAC  592

seq1  CCTCTTTTCTGTGATTAAGTTACCTTTCTAAGTACTTGGCTTTCCTCTTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCTGTGATTAAGTTACCTTTCTAAGTACTTGGCTTTCCTCTTG  642

seq1  TGAACATAAGGTGTTCCATCTGCCAGTTTATCATGGAGACTTAAAATGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAAGGTGTTCCATCTGCCAGTTTATCATGGAGACTTAAAATGGA  692

seq1  AACAAGAATAGTTTAATGACTTCTGTATACTCACTTAATAAAAGACAAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAATAGTTTAATGACTTCTGTATACTCACTTAATAAAAGACAAGC  742

seq1  TTAAAATGAAGAGAGTAGAATTATTTAAGACTTTATCTAGCTTATTCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATGAAGAGAGTAGAATTATTTAAGACTTTATCTAGCTTATTCCCA  792

seq1  ATTTTTAGTTATTTTTATTCTGATGTCCAATTTTGAACAATGTTGTATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTTATTTTTATTCTGATGTCCAATTTTGAACAATGTTGTATTT  842

seq1  TTATTATTAAGTTAAAGTATGTAATGTGGCAAAAATGAAATCTTGAACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTAAGTTAAAGTATGTAATGTGGCAAAAATGAAATCTTGAACTT  892

seq1  TGAATGCCCATGAAAAAGTTGAATCGAACTGACCTGTGTATCCTGGATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGCCCATGAAAAAGTTGAATCGAACTGACCTGTGTATCCTGGATAT  942

seq1  ATTGGTTTTCTTTCCTTTTTATTCACCCTTCTTGTAAATTTTTGAAGCCA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTTCTTTCCTTTTTATTCACCCTTCTTGTAAATTTTTGAAGCCA  992

seq1  GTGACCCTTGTCTTGATCCCTCCTCTCCCCAAACGTGGGCCTAGCAACTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTTGTCTTGATCCCTCCTCTCCCCAAACGTGGGCCTAGCAACTT  1042

seq1  AAGTGATCAACACATGCCTATTAAATATATGAGCTAAGAATGATTTAGCA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGATCAACACATGCCTATTAAATATATGAGCTAAGAATGATTTAGCA  1092

seq1  CATCTACATATCTCATCAGTGTTTAACATTTTGTAGTTCAGAAACAATAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACATATCTCATCAGTGTTTAACATTTTGTAGTTCAGAAACAATAG  1142

seq1  AATGGGAATTC  1158
      |||||||||||
seq2  AATGGGAATTC  1153