BAC Information

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BAC

Clone NameB6Ng01-059K02
Chromosome6 (Build37)
Map Location 70,754,723 - 70,891,846
singlet/doubletdoublet
Overlap geneEif2ak3, 1700011F03Rik
Upstream geneIgk, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5, Igk-V21-4, Igk-V21-3, Igk-V21-2, Igk-V21-1, Igk-J1, Igk-J2, Igk-J3, Igk-J4, Igk-J5, Igk-C, Rpia
Downstream geneLOC232077, LOC619547, Thnsl2, Fabp1, Smyd1, Krcc1, Gm1070, Cd8b1, LOC100042853, Cd8a, Rmnd5a, LOC100042863, Rnf103, Vps24, Jmjd1a, Ppia-ps6_731.1, LOC668029, LOC668034, Reep1, Mrpl35, Immt, Ptcd3, Rpo1-4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K02.bB6Ng01-059K02.g
ACCDH880849DH880850
length8401,099
definitionDH880849|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K02, 5' end.DH880850|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,754,723 - 70,755,562)(70,890,744 - 70,891,846)
sequence
gaattctgtagtgcaggctacagcagcaactctaacattataccactagg
tggcagcagcaaccaccatatctttcctctagacaacaaaaacaaacata
aatttgcaatctggaggtcaattctttccccacccccattctctcctccc
atctccatctcttccctccacgcctgcatccatgaacccaagtcctctgg
aagactctcagccaaactagttcagttcttcacggagaacccatgtcaag
aagcacattctatacagctccgaaaagaatattcatgaaaacagcactca
ctctttcttcacataaggtgttagtattttgtatccttctgctattcaat
ttgtacaaacgctactgcttttgtttgaatgctcgttccctccaaaacac
atgctgaatttttatttatttatttattatctataatatttatttgtttg
tttgtttgtttgttttttcaacacacgggttctctgtgaaaccctggcta
tcctggaactcactttgttgaccaggctggcttcaaactcagagagccac
ctgcttctgcctcccgagtgttgggactaaaggggtgcacaaccacgccc
ggccccttcatgatgaaatttaattgtttctccactgccaatatcgagcc
ttctgagcacattttctgactaaaacaatggaaaatagcactgaactcac
ccacacagttgcatttcgaactgaggaattctttacggttagggacggca
actctgccttcttgtaccactaggtggcagcaacatctcagttgtggcta
ccataaacctctgcatgcccctcccccccccccccacccc
gaattcacagaggtctgcctgcctctgcttcctgagtgctgctagtattg
aaaacatacaccaacacactgggctgttataatttttaaatttaatttat
ttatttttacttcacgtatatgagtgcctgcctgtatgtatatcatttgt
gtgccaggtaccatcagaggccagaaaagagtatcagataccctggaatt
ggaattaccaatggtcataagacactatatgggtactagaaattaaaccc
atgtttctgcaagagcagcaagtgctcttaaccacagacccatctcttta
gcccctcttttattttatttttttaattatgtgtctactcatgtgcagct
gttggggaggcatgactcgtgagtgcaaatatccacagacatcaaataat
ctggggttacgggcagttgtgaaccgattggcgtgggtactgggaaccaa
tcttgggtcctccaagtacatgatcttaactatggaattatcttttcagc
ccctcaatacatactatttgagattctagtagcaaaaaatcatttaatag
ccccatgctgggagggccctaattgactttccgtttatttgaaacacaat
atatagggaaaaatctggggcttatcagaggatgcctcctgggaagatgg
catttgaattggcagccactaaagaaaaactcatctagcccagcggttct
caccttcccaatgccgtgacccttttacacagctcctcatgttgtggtga
ccccccttctcatacaattattttcattgctacctcataatggtaactgt
aattttgctaccattctgaactgtaatgtaaatgtctgatatgcaggata
tctgatatgcggcccttgtgaaagggtctttggaaccccagagggtccag
tcccacaggttgagaaccactgatatagatcaatggatattatggatgtc
aaaagagatgataagcagttaaggggaaagaaagatttgtcagttggaga
gagtggcagatgatgttggagacaagggaggttattctcatcctaagaac
ctaaggtcttctgttcaccatggggctgggtaaactgtcacgtgacggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_70754723_70755562
seq2: B6Ng01-059K02.b_43_882

seq1  GAATTCTGTAGTGCAGGCTACAGCAGCAACTCTAACATTATACCACTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTAGTGCAGGCTACAGCAGCAACTCTAACATTATACCACTAGG  50

seq1  TGGCAGCAGCAACCACCATATCTTTCCTCTAGACAACAAAAACAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCAGCAACCACCATATCTTTCCTCTAGACAACAAAAACAAACATA  100

seq1  AATTTGCAATCTGGAGGTCAATTCTTTCCCCACCCCCATTCTCTCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAATCTGGAGGTCAATTCTTTCCCCACCCCCATTCTCTCCTCCC  150

seq1  ATCTCCATCTCTTCCCTCCACGCCTGCATCCATGAACCCAAGTCCTCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATCTCTTCCCTCCACGCCTGCATCCATGAACCCAAGTCCTCTGG  200

seq1  AAGACTCTCAGCCAAACTAGTTCAGTTCTTCACGGAGAACCCATGTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCTCAGCCAAACTAGTTCAGTTCTTCACGGAGAACCCATGTCAAG  250

seq1  AAGCACATTCTATACAGCTCCGAAAAGAATATTCATGAAAACAGCACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTCTATACAGCTCCGAAAAGAATATTCATGAAAACAGCACTCA  300

seq1  CTCTTTCTTCACATAAGGTGTTAGTATTTTGTATCCTTCTGCTATTCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTTCACATAAGGTGTTAGTATTTTGTATCCTTCTGCTATTCAAT  350

seq1  TTGTACAAACGCTACTGCTTTTGTTTGAATGCTCGTTCCCTCCAAAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAACGCTACTGCTTTTGTTTGAATGCTCGTTCCCTCCAAAACAC  400

seq1  ATGCTGAATTTTTATTTATTTATTTATTATCTATAATATTTATTTGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAATTTTTATTTATTTATTTATTATCTATAATATTTATTTGTTTG  450

seq1  TTTGTTTGTTTGTTTTTTCAACACACGGGTTCTCTGTGAAACCCTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTTTTTTCAACACACGGGTTCTCTGTGAAACCCTGGCTA  500

seq1  TCCTGGAACTCACTTTGTTGACCAGGCTGGCTTCAAACTCAGAGAGCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAACTCACTTTGTTGACCAGGCTGGCTTCAAACTCAGAGAGCCAC  550

seq1  CTGCTTCTGCCTCCCGAGTGTTGGGACTAAAGGGGTGCACAACCACGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTGCCTCCCGAGTGTTGGGACTAAAGGGGTGCACAACCACGCCC  600

seq1  GGCCCCTTCATGATGAAATTTAATTGTTTCTCCACTGCCAATATCGAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTCATGATGAAATTTAATTGTTTCTCCACTGCCAATATCGAGCC  650

seq1  TTCTGAGCACATTTTCTGACTAAAACAATGGAAAATAGCACTGAACTCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGCACATTTTCTGACTAAAACAATGGAAAATAGCACTGAACTCAC  700

seq1  CCACACAGTTGCATTTCGAACTGAGGAATTCTTTACGGTTAGGGACGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGTTGCATTTCGAACTGAGGAATTCTTTACGGTTAGGGACGGCA  750

seq1  ACTCTGCCTTCTTGTACCACTAGGTGGCAGCAACATCTCAGTTGTGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCCTTCTTGTACCACTAGGTGGCAGCAACATCTCAGTTGTGGCTA  800

seq1  CCATAAACCTCTGCATGCCCCTCCCCCCCCCCCCCCCCCC  840
      ||||||||||||||||||||||||||||||||||| ||||
seq2  CCATAAACCTCTGCATGCCCCTCCCCCCCCCCCCCACCCC  840

seq1: chr6_70890744_70891846
seq2: B6Ng01-059K02.g_71_1165 (reverse)

seq1  GCCGTCACTGGACATGTTTACCCAGCCCCACTGGTGAACAGAAAGACCTT  50
      ||||||||  |||| ||||||||||||||| |||||||||| ||||||||
seq2  GCCGTCACGTGACA-GTTTACCCAGCCCCA-TGGTGAACAG-AAGACCTT  47

seq1  AGTTTCTTTAGGATGTAGAATAACCTCCC-TGTCTCCAACCTCATCTGCC  99
      || ||| |||||||| ||||||||||||| |||||||||| |||||||||
seq2  AGGTTC-TTAGGATG-AGAATAACCTCCCTTGTCTCCAACATCATCTGCC  95

seq1  ACTTCTCTCCATCCTGACAAATCTTTCTTTCCCCTTAACTGCTTATCATC  149
      || ||||||||  |||||||||||||||||||||||||||||||||||||
seq2  AC-TCTCTCCA-ACTGACAAATCTTTCTTTCCCCTTAACTGCTTATCATC  143

seq1  TCTTTTGACATCCATAATATCCATTTGATCTATATCAGTGGTTCTCAACC  199
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCTTTTGACATCCATAATATCCA-TTGATCTATATCAGTGGTTCTCAACC  192

seq1  TGTGGGACTGGACCCCTCTGGGGTTCCAAAGACCCTTTCACAAGGGCCGC  249
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTGGGACTGGA-CCCTCTGGGGTTCCAAAGACCCTTTCACAAGGGCCGC  241

seq1  ATATCAGATATCCTGCATATCAGACATTTACATTACAGTTCAGAATGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGATATCCTGCATATCAGACATTTACATTACAGTTCAGAATGGTA  291

seq1  GCAAAATTACAGTTACCATTATGAGGTAGCAATGAAAATAATTGTATGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTACAGTTACCATTATGAGGTAGCAATGAAAATAATTGTATGAG  341

seq1  AAGGGGGGTCACCACAACATGAGGAGCTGTGTAAAAGGGTCACGGCATTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGTCACCACAACATGAGGAGCTGTGTAAAAGGGTCACGGCATTG  391

seq1  GGAAGGTGAGAACCGCTGGGCTAGATGAGTTTTTCTTTAGTGGCTGCCAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGAGAACCGCTGGGCTAGATGAGTTTTTCTTTAGTGGCTGCCAA  441

seq1  TTCAAATGCCATCTTCCCAGGAGGCATCCTCTGATAAGCCCCAGATTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGCCATCTTCCCAGGAGGCATCCTCTGATAAGCCCCAGATTTTT  491

seq1  CCCTATATATTGTGTTTCAAATAAACGGAAAGTCAATTAGGGCCCTCCCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATATTGTGTTTCAAATAAACGGAAAGTCAATTAGGGCCCTCCCA  541

seq1  GCATGGGGCTATTAAATGATTTTTTGCTACTAGAATCTCAAATAGTATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGGGCTATTAAATGATTTTTTGCTACTAGAATCTCAAATAGTATGT  591

seq1  ATTGAGGGGCTGAAAAGATAATTCCATAGTTAAGATCATGTACTTGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGGGGCTGAAAAGATAATTCCATAGTTAAGATCATGTACTTGGAGG  641

seq1  ACCCAAGATTGGTTCCCAGTACCCACGCCAATCGGTTCACAACTGCCCGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGATTGGTTCCCAGTACCCACGCCAATCGGTTCACAACTGCCCGT  691

seq1  AACCCCAGATTATTTGATGTCTGTGGATATTTGCACTCACGAGTCATGCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGATTATTTGATGTCTGTGGATATTTGCACTCACGAGTCATGCC  741

seq1  TCCCCAACAGCTGCACATGAGTAGACACATAATTAAAAAAATAAAATAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAACAGCTGCACATGAGTAGACACATAATTAAAAAAATAAAATAAA  791

seq1  AGAGGGGCTAAAGAGATGGGTCTGTGGTTAAGAGCACTTGCTGCTCTTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTAAAGAGATGGGTCTGTGGTTAAGAGCACTTGCTGCTCTTGC  841

seq1  AGAAACATGGGTTTAATTTCTAGTACCCATATAGTGTCTTATGACCATTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATGGGTTTAATTTCTAGTACCCATATAGTGTCTTATGACCATTG  891

seq1  GTAATTCCAATTCCAGGGTATCTGATACTCTTTTCTGGCCTCTGATGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCAATTCCAGGGTATCTGATACTCTTTTCTGGCCTCTGATGGTA  941

seq1  CCTGGCACACAAATGATATACATACAGGCAGGCACTCATATACGTGAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCACACAAATGATATACATACAGGCAGGCACTCATATACGTGAAGT  991

seq1  AAAAATAAATAAATTAAATTTAAAAATTATAACAGCCCAGTGTGTTGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAATAAATTAAATTTAAAAATTATAACAGCCCAGTGTGTTGGTG  1041

seq1  TATGTTTTCAATACTAGCAGCACTCAGGAAGCAGAGGCAGGCAGACCTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCAATACTAGCAGCACTCAGGAAGCAGAGGCAGGCAGACCTCT  1091

seq1  GTGA  1103
      ||||
seq2  GTGA  1095