BAC Information

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BAC

Clone NameB6Ng01-060P17
Chromosome6 (Build37)
Map Location 41,738,394 - 41,739,480
singlet/doubletsinglet
Overlap genenone
Upstream geneEG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459
Downstream genePip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060P17.bB6Ng01-060P17.g
ACCDH881797DH881798
length1,1951,063
definitionDH881797|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P17, 5' end.DH881798|Mus musculus domesticus DNA, BAC clone: B6Ng01-060P17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgggccagcctccagatatgaataaagaattctaccccaatgga
tggtcaacggccccaatatatgccaggaaatagttgctgttatcctgaaa
ccatattttaataagagaatacacatttataattacatggatgatatctt
gtctcagggaaataaaaaaacttcacctcatgatctcaaagatttacaga
taccactctaacaagaataagaatcataacagccccaaaatgacattcac
cccacccaggtcacctttggaacaaaatttccctaacctcagaagtcttc
ataagcttgccctaacattaccccagatgctcaatcttaataacctccag
agtttattgggaaaccttagctatttctggccatgtctccaatctctaca
aaaaccctatagcctctttttaaacctcttaaaaggaaataaaattccct
cttgcccaggaacactcacttccaaggccaaacaagaccattgcaagatt
aaagggtcactccaggccatgtcctaggcccaatatacaccagacaaacc
ttaccagctcctcatattcaaccctcaccctaacctcatatggaccctat
ataaaccacagcgagttttggaatggctacacactcttattgactgtgct
accagactcctaacagaggttgatgccctatcctctataataaagcaagg
aaaagacagggccttaaatataatgggcaaagaaccagatatccttggat
gacttctctctctctctctctctctctctctctctctctctctctcttct
gatatccaatggttactttaaaaattactctttaatttaccatcatccta
ctgggggttcctggacaaatgataaaaattatctcaatgagactgggccc
tgctctggcacttttgacatggctgccctacctctgactacacacctgtt
catgaaaaccattcctaagctcccttgtgcagtcatacttttgcagtcga
aatcgactctcaattattcatttcaggagaacttctaggccttaggagaa
gacgccctacaactattggctgacagcctgaggcggttactactgtgtgc
tcctaattctttgtctgcgcaccctctgggtcgtatcgatagatgatctt
ggtgcgataaccagggattcggattcacaagatacactgaaatgt
gaattcctttacttctgtgcttcatagatcatcccaaataactagcacca
agttttcttttatatagtggatcctcaataaatagcaattgttggttata
catacatgttattagccctaagctggtaaggcaaaataacagaaaaagtt
gaggctgaatatttggaatcaatctttatccaaagtatgtccctgacaca
tagaaattgatttttagcaacagttattaacagaattgaaaattgaaagt
gattctagtcaggtatatgtaatgctgacatttatcatggctaacattgg
tatccaagactttcaggataaatttgccttgctcttattttagctcttta
ttattctgacaaattagaataataatggaaaaatatagaatttctcttct
tctatgtgcttgaggatggaagaaatggtagaaagaacataaataaaaat
gggaagactcttacattagcttagaaaatcctcacagatgacagaattgt
tatagaaatgttatcttttgttgaaatattttaagagcaatttatcactc
tgataagtagacattgattatcatgtgataatttatttcacatctttttc
atttttatttatttatttatttttggtttttcaagacagggtttctcttt
atagccctggctgtcctggaactcactttgtagaccaggctggcctcgaa
ctcagaaatctgcctgcctctgcctcctgagtcctgggatcccctagcca
ggcttccatgtctggcctcaatgggagaggatatacttaattctgatgta
acttcacccgccaagcctggttgctacggaggttatgaggagcttacctt
ctggagaagggaaggggagaaaaagcaaagggagtggagagtggactggg
aggagaggaacgagagagctgtgatctggatgtaagcgaataaataaaag
tactgaaaacaaaagaaaaatagcacacatacaagtttccgtttaaatgt
tttttcccatcatatcagtcacaggcccttctctctcttctagtccacgt
cataccccttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_41738394_41739480
seq2: B6Ng01-060P17.g_69_1131

seq1  GAATTCCTTTACTTCTGTGCTTCATAGATCATCCCAAATAACTAGCACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACTTCTGTGCTTCATAGATCATCCCAAATAACTAGCACCA  50

seq1  AGTTTTCTTTTATATAGTGGATCCTCAATAAATAGCAATTGTTGGTTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTTTTATATAGTGGATCCTCAATAAATAGCAATTGTTGGTTATA  100

seq1  CATACATGTTATTAGCCCTAAGCTGGTAAGGCAAAATAACAGAAAAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTTATTAGCCCTAAGCTGGTAAGGCAAAATAACAGAAAAAGTT  150

seq1  GAGGCTGAATATTTGGAATCAATCTTTATCCAAAGTATGTCCCTGACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGAATATTTGGAATCAATCTTTATCCAAAGTATGTCCCTGACACA  200

seq1  TAGAAATTGATTTTTAGCAACAGTTATTAACAGAATTGAAAATTGAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTGATTTTTAGCAACAGTTATTAACAGAATTGAAAATTGAAAGT  250

seq1  GATTCTAGTCAGGTATATGTAATGCTGACATTTATCATGGCTAACATTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTAGTCAGGTATATGTAATGCTGACATTTATCATGGCTAACATTGG  300

seq1  TATCCAAGACTTTCAGGATAAATTTGCCTTGCTCTTATTTTAGCTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGACTTTCAGGATAAATTTGCCTTGCTCTTATTTTAGCTCTTTA  350

seq1  TTATTCTGACAAATTAGAATAATAATGGAAAAATATAGAATTTCTCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGACAAATTAGAATAATAATGGAAAAATATAGAATTTCTCTTCT  400

seq1  TCTATGTGCTTGAGGATGGAAGAAATGGTAGAAAGAACATAAATAAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTGCTTGAGGATGGAAGAAATGGTAGAAAGAACATAAATAAAAAT  450

seq1  GGGAAGACTCTTACATTAGCTTAGAAAATCCTCACAGATGACAGAATTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGACTCTTACATTAGCTTAGAAAATCCTCACAGATGACAGAATTGT  500

seq1  TATAGAAATGTTATCTTTTGTTGAAATATTTTAAGAGCAATTTATCACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAATGTTATCTTTTGTTGAAATATTTTAAGAGCAATTTATCACTC  550

seq1  TGATAAGTAGACATTGATTATCATGTGATAATTTATTTCACATCTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGTAGACATTGATTATCATGTGATAATTTATTTCACATCTTTTTC  600

seq1  ATTTTTATTTATTTATTTATTTTTGGTTTTTCAAGACAGGGTTTCTCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTATTTATTTATTTTTGGTTTTTCAAGACAGGGTTTCTCTTT  650

seq1  ATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAA  700

seq1  CTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTCCTGGGATCCCCTAGCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAATCTGCCTGCCTCTGCCTCCTGAGTCCTGGGATCCCCTAGCCA  750

seq1  GGCTTCCATGTCTGGCCTCAATGGGAGAGGATATACTTAATTCTGATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCATGTCTGGCCTCAATGGGAGAGGATATACTTAATTCTGATGTA  800

seq1  ACTTCACCCGCCAAGCCTGGTTGCTACGGAGGTTATGAGGAGCTTACCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACCCGCCAAGCCTGGTTGCTACGGAGGTTATGAGGAGCTTACCTT  850

seq1  CTGGAGAAGGGAAGGGGAGAAAAAGCAAAGGGGAGTGGGAGAGTGGGACT  900
      ||||||||||||||||||||||||||||| |||||| ||||||| |||||
seq2  CTGGAGAAGGGAAGGGGAGAAAAAGCAAA-GGGAGT-GGAGAGT-GGACT  897

seq1  GGGAGGAGAGGAACGAGAGGAGCTGTGATCTGGATGTAAAGCGAATAAAT  950
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  GGGAGGAGAGGAACGAGA-GAGCTGTGATCTGGATGT-AAGCGAATAAAT  945

seq1  AAAAGTACTGAAAACAAAAAGAAAAATAAGCAACACATACACAGTTTCCC  1000
      ||||||||||||||| ||||||||||| ||| ||||||||| ||||||| 
seq2  AAAAGTACTGAAAAC-AAAAGAAAAAT-AGC-ACACATACA-AGTTTCCG  991

seq1  TTTTTAAAATGTTTTTTCCCCATCAATTTATCAGTCACAGCCCCCTTCCT  1050
      |||   ||||||||||| |||||||   ||||||||||||  ||||||  
seq2  TTT---AAATGTTTTTT-CCCATCA---TATCAGTCACAG-GCCCTTC--  1031

seq1  TCTCTCTTCCTAGTCCCAACTTCATAAACCCCTTCTC  1087
      |||||||| |||||||  || ||||  ||||||||||
seq2  TCTCTCTT-CTAGTCC--ACGTCAT--ACCCCTTCTC  1063