BAC Information

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BAC

Clone NameB6Ng01-061E19
Chromosome6 (Build37)
Map Location 88,004,145 - 88,146,741
singlet/doubletdoublet
Overlap geneRpn1
Upstream geneGfpt1, D6Ertd527e, Antxr1, Gkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7
Downstream geneGata2, Dnajb8, Eefsec, Ruvbl1, Sec61a1, 4933428M03Rik, Mgll, Abtb1, Podxl2, LOC100043146, Mcm2, Gpr175, 4933427D06Rik, Gm1965, LOC100043153, LOC100043159, EG624483, EG624491
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-061E19.bB6Ng01-061E19.g
ACCDH882015DH882016
length919946
definitionDH882015|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E19, 5' end.DH882016|Mus musculus domesticus DNA, BAC clone: B6Ng01-061E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,004,145 - 88,005,065)(88,145,794 - 88,146,741)
sequence
gaattcagaaagtctgttaagaatggagaaaaacaggttcttggaagttc
actagcaagtggcagaagtggaccactacagtctcctccctcgacacgcc
catggggagcagctaggaaaggtgagggagggagctcacataaatcactg
actgctgtggggttcaggcgtatgggttctccttccccaccgctgccaaa
aagagtcctaagacgtgtgttcttaaggcctgagacatgagacagccagg
atcacaggtgtcttgtttcctcaggcagcgtgtaaggaggcagggcatgg
ttttgggctggttctcagtcttccaagagctgggaaggagagcaaggcag
tgtaggggtaggggatggagactttaggggatgctgcctgctagccacct
ctgggaggatagaataccagacttcccaaccattgctccaggaggacaat
gggccaaatctttgtatccgctatcctttgctgcaaaacattaaccctgc
agcttaatgctgaagcccagcatgacagctagttagattagccaaatcag
agagcactctggacatcaacctctgtcctccataggcgtatgggaacatg
ggaacacacacacacacacacacacacacacacacacacacacacacaca
cacacaggggattggggtgaggggtacagaagtagtactcaagccagact
gtgcacggtggctcatgccctgtaatcccagcatttaggaggttaaagta
caaattctgacgccacactgtgttataaagtgagattctcagcaggcatg
gtggcacacacctttatcccagcatctgggaggcagaggcgcaggatctt
tttgagtttgaggcaacttggcctacctagctagtccctgccatcccaga
gtacatatttatactgtct
gaattccatggccctgcagagttctaggaggagaacgcggtgcgcagagg
aaactgccctgaccgagtcggcgcggcggctgtcaaggcgggggtctccg
agcagataccctccccctcgcccggagcaggtaatttccctcttttctcc
caaagtcgcaattaaaattatctccctgtttgaacgagatgggggttgtc
ttttccatgccacattgcggaccgggcagcgtcctgcctgtcatagaggt
gaaaatggccaagcttggtgggttcccactcgaaacgagagcccggggtt
tctcacggtgctggcgcagagcggagtacagagggggatttaattactcc
gttcggcagctcagaaaatcgccatgcaacaagggcttaaccgggtggtt
aagctatgcttgagcctgggcctcaggagacccgcaacagcctagcctgc
ccacagactgggcatgggagaggaggagggtggtcctgccaggtcctttg
aggacccaaggttgccttctggaaactgcaagcaaccagccagctgggcc
gagcccctgctgaggttggagtccctgcgtctgatgcgggtctgctgggt
tttccagcaggaactaacccgtctgaaagggaaaattgcaggctaggata
gcagagcactgagttggcgaatagaggggagcctgtgctgatgctgatga
acgtgtgtgaatcaagtagatccacaagccaagaagccactacttggcca
aaaatgaaccaccactaaaaagtccaacaaacaacagggaggtccgagtc
agttcccaagatggcttagatttcattttccccaaccccaccgccccccc
ccaacgaaagcagattatttcaacttacaaacgcccactctgaggttcct
aagataccttcaggtggacacttgcttttaaatgtttgtggttgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_88004145_88005065
seq2: B6Ng01-061E19.b_47_965

seq1  GAATTCAGAAAGTCTGTTAAGAATGGAGAAAAACAGGTTCTTGGAAGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAGTCTGTTAAGAATGGAGAAAAACAGGTTCTTGGAAGTTC  50

seq1  ACTAGCAAGTGGCAGAAGTGGACCACTACAGTCTCCTCCCTCGACACGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAGTGGCAGAAGTGGACCACTACAGTCTCCTCCCTCGACACGCC  100

seq1  CATGGGGAGCAGCTAGGAAAGGTGAGGGAGGGAGCTCACATAAATCACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGGAGCAGCTAGGAAAGGTGAGGGAGGGAGCTCACATAAATCACTG  150

seq1  ACTGCTGTGGGGTTCAGGCGTATGGGTTCTCCTTCCCCACCGCTGCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGGGGTTCAGGCGTATGGGTTCTCCTTCCCCACCGCTGCCAAA  200

seq1  AAGAGTCCTAAGACGTGTGTTCTTAAGGCCTGAGACATGAGACAGCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCCTAAGACGTGTGTTCTTAAGGCCTGAGACATGAGACAGCCAGG  250

seq1  ATCACAGGTGTCTTGTTTCCTCAGGCAGCGTGTAAGGAGGCAGGGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGTGTCTTGTTTCCTCAGGCAGCGTGTAAGGAGGCAGGGCATGG  300

seq1  TTTTGGGCTGGTTCTCAGTCTTCCAAGAGCTGGGAAGGAGAGCAAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGCTGGTTCTCAGTCTTCCAAGAGCTGGGAAGGAGAGCAAGGCAG  350

seq1  TGTAGGGGTAGGGGATGGAGACTTTAGGGGATGCTGCCTGCTAGCCACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGGGTAGGGGATGGAGACTTTAGGGGATGCTGCCTGCTAGCCACCT  400

seq1  CTGGGAGGATAGAATACCAGACTTCCCAACCATTGCTCCAGGAGGACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGATAGAATACCAGACTTCCCAACCATTGCTCCAGGAGGACAAT  450

seq1  GGGCCAAATCTTTGTATCCGCTATCCTTTGCTGCAAAACATTAACCCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAATCTTTGTATCCGCTATCCTTTGCTGCAAAACATTAACCCTGC  500

seq1  AGCTTAATGCTGAAGCCCAGCATGACAGCTAGTTAGATTAGCCAAATCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAATGCTGAAGCCCAGCATGACAGCTAGTTAGATTAGCCAAATCAG  550

seq1  AGAGCACTCTGGACATCAACCTCTGTCCTCCATAGGCGTATGGGAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTCTGGACATCAACCTCTGTCCTCCATAGGCGTATGGGAACATG  600

seq1  GGAACACACACACACACACACACACACACACACACACACACACACACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACACACACACACACACACACACACACACACACACACACACACACA  650

seq1  CACACAGGGGATGGGGGTGAGGGGTACAGAAGTAGTACTCAAGCCAGACT  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACACAGGGGATTGGGGTGAGGGGTACAGAAGTAGTACTCAAGCCAGACT  700

seq1  GTGCACGGTGGCTCATG-CCTGTAATCCCAGCATTTAGGAGGCTAAAGTA  749
      ||||||||||||||||| |||||||||||||||||||||||| |||||||
seq2  GTGCACGGTGGCTCATGCCCTGTAATCCCAGCATTTAGGAGGTTAAAGTA  750

seq1  CAAA-TCTGAGGCCACACTGGGTTATAAAGTGAGATTCTCAGCAGGCATG  798
      |||| ||||| ||||||||| |||||||||||||||||||||||||||||
seq2  CAAATTCTGACGCCACACTGTGTTATAAAGTGAGATTCTCAGCAGGCATG  800

seq1  GTGGCACACACCTTTAATCCCAGCATCTGGGAGGCAGAGGCAGCAGGATC  848
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  GTGGCACACACCTTT-ATCCCAGCATCTGGGAGGCAGAGGC-GCAGGATC  848

seq1  TTTTTGAGTTTGAGGCCAACCTGGCCTACATAGCTAGTTCCATGCCATCC  898
      ||||||||||||||| |||| |||||||| ||||||| ||| ||||||||
seq2  TTTTTGAGTTTGAGG-CAACTTGGCCTACCTAGCTAG-TCCCTGCCATCC  896

seq1  CAGAGTACATAGAGAGACTGTCT  921
      |||||||||||   | |||||||
seq2  CAGAGTACATATTTATACTGTCT  919

seq1: chr6_88145794_88146741
seq2: B6Ng01-061E19.g_68_1013 (reverse)

seq1  AACAAC--AAAACATTTAAAAGGCAAGTGTCCACCTGAAGGTATCTTAGG  48
      ||||||   |||||||||||| ||||||||||||||||||||||||||||
seq2  AACAACCACAAACATTTAAAA-GCAAGTGTCCACCTGAAGGTATCTTAGG  49

seq1  AACCTCAGAGTGGGCGTTTGTAAGTTGAAATAAATCTGCTTTCGTTGGGG  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AACCTCAGAGTGGGCGTTTGTAAGTTGAAAT-AATCTGCTTTCGTTGGGG  98

seq1  GGGGGCGGTGGGGTTGGGGAAAATCGAATCTAAGCCATCTTGGGAACTGA  148
      ||||||||||||||||||||||||  ||||||||||||||||||||||||
seq2  GGGGGCGGTGGGGTTGGGGAAAATGAAATCTAAGCCATCTTGGGAACTGA  148

seq1  CTCGGACCTCCCTGTTGTTTGTTTGGACTTTTTAGTGGTGGTTCATTTTT  198
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCGGACCTCCCTGTTGTTTG-TTGGACTTTTTAGTGGTGGTTCATTTTT  197

seq1  GGCCTAGTAGTGGCTTCTTGGCTTTGTGGATCTACCTGATTCACACACGT  248
      |||| ||||||||||||||||| |||||||||||| ||||||||||||||
seq2  GGCCAAGTAGTGGCTTCTTGGC-TTGTGGATCTACTTGATTCACACACGT  246

seq1  TCATCAGCATCAGCACAGGCTCCCCTCTATTCGCCAACTCAGTGCTCTGC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGCATCAGCACAGGCTCCCCTCTATTCGCCAACTCAGTGCTCTGC  296

seq1  TATCCTAGCCTGCAATTTTCCCTTTCAGACGGGTTAGTTCCTGCTGGAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAGCCTGCAATTTTCCCTTTCAGACGGGTTAGTTCCTGCTGGAAA  346

seq1  ACCCAGCAGACCCGCATCAGACGCAGGGACTCCAACCTCAGCAGGGGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCAGACCCGCATCAGACGCAGGGACTCCAACCTCAGCAGGGGCTC  396

seq1  GGCCCAGCTGGCTGGTTGCTTGCAGTTTCCAGAAGGCAACCTTGGGTCCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGCTGGCTGGTTGCTTGCAGTTTCCAGAAGGCAACCTTGGGTCCT  446

seq1  CAAAGGACCTGGCAGGACCACCCTCCTCCTCTCCCATGCCCAGTCTGTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGACCTGGCAGGACCACCCTCCTCCTCTCCCATGCCCAGTCTGTGG  496

seq1  GCAGGCTAGGCTGTTGCGGGTCTCCTGAGGCCCAGGCTCAAGCATAGCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAGGCTGTTGCGGGTCTCCTGAGGCCCAGGCTCAAGCATAGCTT  546

seq1  AACCACCCGGTTAAGCCCTTGTTGCATGGCGATTTTCTGAGCTGCCGAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACCCGGTTAAGCCCTTGTTGCATGGCGATTTTCTGAGCTGCCGAAC  596

seq1  GGAGTAATTAAATCCCCCTCTGTACTCCGCTCTGCGCCAGCACCGTGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTAAATCCCCCTCTGTACTCCGCTCTGCGCCAGCACCGTGAGA  646

seq1  AACCCCGGGCTCTCGTTTCGAGTGGGAACCCACCAAGCTTGGCCATTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCGGGCTCTCGTTTCGAGTGGGAACCCACCAAGCTTGGCCATTTTC  696

seq1  ACCTCTATGACAGGCAGGACGCTGCCCGGTCCGCAATGTGGCATGGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTATGACAGGCAGGACGCTGCCCGGTCCGCAATGTGGCATGGAAAA  746

seq1  GACAACCCCCATCTCGTTCAAACAGGGAGATAATTTTAATTGCGACTTTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCCCATCTCGTTCAAACAGGGAGATAATTTTAATTGCGACTTTG  796

seq1  GGAGAAAAGAGGGAAATTACCTGCTCCGGGCGAGGGGGAGGGTATCTGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGAGGGAAATTACCTGCTCCGGGCGAGGGGGAGGGTATCTGCT  846

seq1  CGGAGACCCCCGCCTTGACAGCCGCCGCGCCGACTCGGTCAGGGCAGTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGACCCCCGCCTTGACAGCCGCCGCGCCGACTCGGTCAGGGCAGTTT  896

seq1  CCTCTGCGCACCGCGTTCTCCTCCTAGAACTCTGCAGGGCCATGGAATTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCGCACCGCGTTCTCCTCCTAGAACTCTGCAGGGCCATGGAATTC  946