BAC Information

Click to search

BAC

Clone NameB6Ng01-062M02
Chromosome6 (Build37)
Map Location 61,580,632 - 61,675,100
singlet/doubletdoublet
Overlap geneC130092O11Rik
Upstream geneSnca, ENSMUSG00000064018, Mmrn1, LOC100041756, LOC100041764, LOC100042694
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062M02.bB6Ng01-062M02.g
ACCDH883053DH883054
length1,2081,149
definitionDH883053|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M02, 5' end.DH883054|Mus musculus domesticus DNA, BAC clone: B6Ng01-062M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,673,867 - 61,675,100)(61,580,632 - 61,581,810)
sequence
gaattcattaaatatctcaattgagtaaatgagaaagatcctaaaatcta
ggttctgggttgtcttttcaacatatacaatgcccaatataccctacaaa
gaaaatatatcctcacatttaaatacacttgaatattactcattataaaa
acctttccagacactcatgactctgcaccttgtctctgttatatactctc
agctacctagcatccacctcagtcctgataatgctgagcatatactgagg
tgtatggttgtgccttcacctccttctctcttcctccttgtccagtttta
tgacccataataattatcagcaatcattctgtctgtattgattatataat
tttattttgtagaattttatcaagtaaaatatcatataaaataacaataa
aaattaggctcttatttttcagttagtagggcgtacgaaaaccctctctg
atgattttactgcctccctcctgatagatgatgggaaagaaaagcactaa
gatcttctaaaatctcaatttatgtaccaaaataagtacttcaattttaa
taatcattaaaatgaaacattgagccaagggcaaagtcagattgctggag
cttagattcctggtgaagcaaggtacactagtgctttgcacgttcacatc
atgtggaaagcaaagtcaagaaaacaatgaagccaagtcaaacctaggct
gcatagcaaatgcctataaagcctgggctacaggtgaagattatgtatca
ggtacaaccagacagataaaaacagcagaggctgggtggttaaacacagg
attttagttactcaaggttccggacatttcactctgagaccatatgacta
acagacttggagttttgtgagtgccatttcctggctcacaattacttccc
tgggaatgtgcatatgggttttgcagagaatgggattttagatggatatt
agagatataaatagagaggagaggcagacgtcagaaagaagagacagaaa
gatatggagacaagatatgtcctcttcacatagccacttaacctcatggt
caacacaaaacactgtacttagaagcccgaatggagtgaagccttgccct
cctctgtgaatagcttctggcaagcatgatgctctgcttgggggtgaagc
tgagtagatgctcctatgacacgtctttctgctctaacataggcttactg
gtaactct
gaattcctgagctttttccaaagtctaaaatacaaccaaagcatatgaag
ccctaattctaaccaactttttataacaacaatgtgagttaatatatgtt
gtaacctttcaaaaatgtaaaaaagcaacatgagtgtttttcaattttgt
gaatttgtatcatgctaagtgttaatattaaactgtttgaataaaagggc
aaattaattaagatttgaagtattgataatacttatctccagagattttg
ttgaaattttatttagaagaataaacatgcccagataacacatgaattgt
aagtccctggatagaattgcacaaacagaaaggtaaaaataaaaacactt
ttctttggcttgtgttatattttgtttttcacaggttcatatttatgtac
agttcatctgatgttttcatgtgagattgattccttgcttcaaacagtta
tggcaaaaacttctgagagtaacagaactaaagttacaccatacaaattg
agtttatagttaggccagaacaaatcttcactagaatggctttctagtga
aattctagtgacactgggaaaaagctctgagccagtctccgagagctaag
cattttaaacacttatataaggcaagccctgtataaacattgcttaaaaa
cagtctgctacaagacttgattctcagttcactgtcttacgggaacataa
aacctatatgtatggtatatggcgcaaacatctccacagctaggggcacg
acactttacaagtacagaccctccaacacaagaaccagaaatttgacttt
ctacaagctgttctagcagctcagagtcacaattttcataacattttaaa
atcaaattctgtaaaattctttctcatctctcatgttagaattatgaagt
gaagtggaaagcagaagaaacttttttctatcatagaattgaatcacaat
aatttgaaattcatagtatgattccatgactttgcaataatattttctgg
attttgatggtagtagctagcagatttgataattagactaagatagccac
tactggatttccaacttttatgtttgtcagtttatgtaagtcttctgagt
catgaactactagtgcaggcagattactaagtgatgctagtcagttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_61673867_61675100
seq2: B6Ng01-062M02.b_48_1255 (reverse)

seq1  AGAGTTACACAGTATAGCCCCTTATGTTAGAGCAGAAAGGAACTGGTTGG  50
      |||||||| ||||| ||||   |||||||||||||||||  ||  ||  |
seq2  AGAGTTAC-CAGTA-AGCC---TATGTTAGAGCAGAAAG--AC--GT--G  39

seq1  TCATGGGAGCATCTACTTCCAGCTGTTTCACCCCACAGCAGAGCCATCAT  100
      |||| ||||||||||||  ||||   ||||||||  ||||||| ||||||
seq2  TCATAGGAGCATCTACT--CAGC---TTCACCCCCAAGCAGAG-CATCAT  83

seq1  GCTTTGCCAGAAGCATATCACAGAGGAGGGCAAGGCTGTCACT-CATTCG  149
      || |||||||||||   |||||||||||||||||||| ||||| ||||||
seq2  GC-TTGCCAGAAGCTATTCACAGAGGAGGGCAAGGCT-TCACTCCATTCG  131

seq1  GGCTTCTTAAGTAACAGTGTTTTGTGTTGACCATGAGGTTAAGTGGCTTA  199
      |||||| ||||| |||||||||||||||||||||||||||||||||| ||
seq2  GGCTTC-TAAGT-ACAGTGTTTTGTGTTGACCATGAGGTTAAGTGGC-TA  178

seq1  TGTGAAGAGGACATATCTTGTCTCCATATCTGTCTGTCTCTTTCTTTCTG  249
      ||||||||||||||||||||||||||||||| |||||||| |||||||||
seq2  TGTGAAGAGGACATATCTTGTCTCCATATCTTTCTGTCTC-TTCTTTCTG  227

seq1  ACCTTCTTGCCCTCTCCTCTCTATTTATATCTTCTAATATCCATCTAAAA  299
      | | |||   ||||||||||||||||||||| ||||||||||||||||||
seq2  A-CGTCT--GCCTCTCCTCTCTATTTATATC-TCTAATATCCATCTAAAA  273

seq1  TCCCATTCTCTGCAAAAACCATATGCACATTCCCAGGGAAGTAATTGTGA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCCCATTCTCTGCAAAACCCATATGCACATTCCCAGGGAAGTAATTGTGA  323

seq1  GCCAGGAAATGGCACTCACAAAACTCCAAGTCTGTTAGTCATATGGTCTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAATGGCACTCACAAAACTCCAAGTCTGTTAGTCATATGGTCTC  373

seq1  AGAGTGAAATGTCCGGAACCTTGAGTAACTAAAATCCTGTGTTTAACCAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAATGTCCGGAACCTTGAGTAACTAAAATCCTGTGTTTAACCAC  423

seq1  CCAGCCTCTGCTGTTTTTATCTGTCTGGTTGTACCTGATACATAATCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTCTGCTGTTTTTATCTGTCTGGTTGTACCTGATACATAATCTTC  473

seq1  ACCTGTAGCCCAGGCTTTATAGGCATTTGCTATGCAGCCTAGGTTTGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAGCCCAGGCTTTATAGGCATTTGCTATGCAGCCTAGGTTTGACT  523

seq1  TGGCTTCATTGTTTTCTTGACTTTGCTTTCCACATGATGTGAACGTGCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCATTGTTTTCTTGACTTTGCTTTCCACATGATGTGAACGTGCAA  573

seq1  AGCACTAGTGTACCTTGCTTCACCAGGAATCTAAGCTCCAGCAATCTGAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGTGTACCTTGCTTCACCAGGAATCTAAGCTCCAGCAATCTGAC  623

seq1  TTTGCCCTTGGCTCAATGTTTCATTTTAATGATTATTAAAATTGAAGTAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTTGGCTCAATGTTTCATTTTAATGATTATTAAAATTGAAGTAC  673

seq1  TTATTTTGGTACATAAATTGAGATTTTAGAAGATCTTAGTGCTTTTCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGGTACATAAATTGAGATTTTAGAAGATCTTAGTGCTTTTCTTT  723

seq1  CCCATCATCTATCAGGAGGGAGGCAGTAAAATCATCAGAGAGGGTTTTCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATCTATCAGGAGGGAGGCAGTAAAATCATCAGAGAGGGTTTTCG  773

seq1  TACGCCCTACTAACTGAAAAATAAGAGCCTAATTTTTATTGTTATTTTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGCCCTACTAACTGAAAAATAAGAGCCTAATTTTTATTGTTATTTTAT  823

seq1  ATGATATTTTACTTGATAAAATTCTACAAAATAAAATTATATAATCAATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATTTTACTTGATAAAATTCTACAAAATAAAATTATATAATCAATA  873

seq1  CAGACAGAATGATTGCTGATAATTATTATGGGTCATAAAACTGGACAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAATGATTGCTGATAATTATTATGGGTCATAAAACTGGACAAGG  923

seq1  AGGAAGAGAGAAGGAGGTGAAGGCACAACCATACACCTCAGTATATGCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAGAAGGAGGTGAAGGCACAACCATACACCTCAGTATATGCTC  973

seq1  AGCATTATCAGGACTGAGGTGGATGCTAGGTAGCTGAGAGTATATAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATCAGGACTGAGGTGGATGCTAGGTAGCTGAGAGTATATAACAG  1023

seq1  AGACAAGGTGCAGAGTCATGAGTGTCTGGAAAGGTTTTTATAATGAGTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTGCAGAGTCATGAGTGTCTGGAAAGGTTTTTATAATGAGTAA  1073

seq1  TATTCAAGTGTATTTAAATGTGAGGATATATTTTCTTTGTAGGGTATATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAGTGTATTTAAATGTGAGGATATATTTTCTTTGTAGGGTATATT  1123

seq1  GGGCATTGTATATGTTGAAAAGACAACCCAGAACCTAGATTTTAGGATCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTGTATATGTTGAAAAGACAACCCAGAACCTAGATTTTAGGATCT  1173

seq1  TTCTCATTTACTCAATTGAGATATTTAATGAATTC  1234
      |||||||||||||||||||||||||||||||||||
seq2  TTCTCATTTACTCAATTGAGATATTTAATGAATTC  1208

seq1: chr6_61580632_61581810
seq2: B6Ng01-062M02.g_66_1214

seq1  GAATTCCTGAGCTTTTTCCAAAGTCTAAAATACAACCAAAGCATATGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGCTTTTTCCAAAGTCTAAAATACAACCAAAGCATATGAAG  50

seq1  CCCTAATTCTAACCAACTTTTTATAACAACAATGTGAGTTAATATATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATTCTAACCAACTTTTTATAACAACAATGTGAGTTAATATATGTT  100

seq1  GTAACCTTTCAAAAATGTAAAAAAGCAACATGAGTGTTTTTCAATTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCTTTCAAAAATGTAAAAAAGCAACATGAGTGTTTTTCAATTTTGT  150

seq1  GAATTTGTATCATGCTAAGTGTTAATATTAAACTGTTTGAATAAAAGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGTATCATGCTAAGTGTTAATATTAAACTGTTTGAATAAAAGGGC  200

seq1  AAATTAATTAAGATTTGAAGTATTGATAATACTTATCTCCAGAGATTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAAGATTTGAAGTATTGATAATACTTATCTCCAGAGATTTTG  250

seq1  TTGAAATTTTATTTAGAAGAATAAACATGCCCAGATAACACATGAATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATTTTATTTAGAAGAATAAACATGCCCAGATAACACATGAATTGT  300

seq1  AAGTCCCTGGATAGAATTGCACAAACAGAAAGGTAAAAATAAAAACACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCTGGATAGAATTGCACAAACAGAAAGGTAAAAATAAAAACACTT  350

seq1  TTCTTTGGCTTGTGTTATATTTTGTTTTTCACAGGTTCATATTTATGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGCTTGTGTTATATTTTGTTTTTCACAGGTTCATATTTATGTAC  400

seq1  AGTTCATCTGATGTTTTCATGTGAGATTGATTCCTTGCTTCAAACAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTGATGTTTTCATGTGAGATTGATTCCTTGCTTCAAACAGTTA  450

seq1  TGGCAAAAACTTCTGAGAGTAACAGAACTAAAGTTACACCATACAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAAACTTCTGAGAGTAACAGAACTAAAGTTACACCATACAAATTG  500

seq1  AGTTTATAGTTAGGCCAGAACAAATCTTCACTAGAATGGCTTTCTAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAGTTAGGCCAGAACAAATCTTCACTAGAATGGCTTTCTAGTGA  550

seq1  AATTCTAGTGACACTGGGAAAAAGCTCTGAGCCAGTCTCCGAGAGCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGTGACACTGGGAAAAAGCTCTGAGCCAGTCTCCGAGAGCTAAG  600

seq1  CATTTTAAACACTTATATAAGGCAAGCCCTGTATAAACATTGCTTAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAACACTTATATAAGGCAAGCCCTGTATAAACATTGCTTAAAAA  650

seq1  CAGTCTGCTACAAGACTTGATTCTCAGTTCACTGTCTTACGGGAACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCTACAAGACTTGATTCTCAGTTCACTGTCTTACGGGAACATAA  700

seq1  AACCTATATGTATGGTATATGGCGCAAACATCTCCACAGCTAGGGGCACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATGTATGGTATATGGCGCAAACATCTCCACAGCTAGGGGCACG  750

seq1  ACACTTTACAAGTACAGACCCTCCAACACAAGAACCAGAAATTTGACTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACAAGTACAGACCCTCCAACACAAGAACCAGAAATTTGACTTT  800

seq1  CTACAAGCTGTTCTAGCAGCTCAGAGTCACAATTTTCATAACATTTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCTGTTCTAGCAGCTCAGAGTCACAATTTTCATAACATTTTAAA  850

seq1  ATCAAATTCTGTAAAATTCTTTCTCATCTCTCATGTTAGAATTATGAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATTCTGTAAAATTCTTTCTCATCTCTCATGTTAGAATTATGAAGT  900

seq1  GAAGTGGATAGCAGAAGAAAC-TTTTTCTATCATAGAATTGAATCACAAT  949
      |||||||| |||||||||||| ||||||||||||||||||||||||||||
seq2  GAAGTGGAAAGCAGAAGAAACTTTTTTCTATCATAGAATTGAATCACAAT  950

seq1  AATTTGAAATTCATAGTATGAATTCCATGACTTTGCAATTAATATTTCCT  999
      |||||||||||||||||||| ||||||||||||||||| |||||||| ||
seq2  AATTTGAAATTCATAGTATG-ATTCCATGACTTTGCAA-TAATATTTTCT  998

seq1  GGATTTTGATTGGTAAGTAGCTTAGCAGATTTGAATAAAATTAGAACTTA  1049
      ||||||||| |||| |||||| |||||||||||   | |||||| |||  
seq2  GGATTTTGA-TGGT-AGTAGC-TAGCAGATTTG---ATAATTAG-ACT--  1039

seq1  AAGATAGCCACTAACTGGTATTTTCCAAACTTTTATGTTTTGTTCAGTTT  1099
      |||||||||||| ||||| ||||  | |||||||||||||   ||||  |
seq2  AAGATAGCCACT-ACTGG-ATTT--CCAACTTTTATGTTT--GTCAG--T  1081

seq1  TTATGTAAAGTCCTTCTGAGTCATTGAACTTACTAAGTGCAGTGCAGATT  1149
      |||||| |||| ||||||||||| ||||| |||| ||||||| |||||||
seq2  TTATGT-AAGT-CTTCTGAGTCA-TGAAC-TACT-AGTGCAG-GCAGATT  1125

seq1  ACATAAAGTGATGCTAAAGTCTCAGTTGGT  1179
      ||   |||||||||||     |||||||||
seq2  AC--TAAGTGATGCTA----GTCAGTTGGT  1149