BAC Information

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BAC

Clone NameB6Ng01-062N04
Chromosome6 (Build37)
Map Location 137,584,142 - 137,696,325
singlet/doubletdoublet
Overlap geneEps8, Strap
Upstream gene1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h, Rerg, Ptpro
Downstream geneDera, 9830102E05Rik, Mgst1, Lmo3, Igbp1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062N04.bB6Ng01-062N04.g
ACCDH883096DH883097
length1,1451,240
definitionDH883096|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N04, 5' end.DH883097|Mus musculus domesticus DNA, BAC clone: B6Ng01-062N04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(137,695,169 - 137,696,325)(137,584,142 - 137,585,418)
sequence
gaattcacacctgcttttagaggaactagttccgtccatgtctacggagg
gccaccagatggagctcttttacactctatccttgattgcctaaccaggt
tatctaggcttcctagttccaccacaatgctgagacacagactcaatagg
gaccttactaaccttacattttaatatgagaatgtatagatcaggaaggt
ttttctactgcaggaaaaatcttccacatataatcttatgcctcatcatc
ttactctgcagtttcctcaagctgagtagccagagaataaaaccatccaa
gtagagggactgggatggaattacttgtctaccatacacaaacctcctgg
acccaacccttacccacaaccccaagttccatgaacagagaccgagatga
gaacagctgcatccaaaatccaacatctgtccatctctctctccttcaca
gtctgggtgagcaatgctaaggctctcctccaccccagctcagccacagc
tctcaagctgagaataacggaatgtgtgactgaatcattctagaactgac
ttaagcagccccagtccacctgttttccccaaggaacaaaacaaaactgc
ttcctgttctttgtgtctaaatccagctagctaagttccttgggtggaaa
accataatacttatgtacaggttaaaaaaaaaaaaaaaagtgccagctta
tagacagaaaaagatttttcaaactaaaagcaaaacatagtgggacttgg
taagtaagcataaaagtagtgtcttagtcagggtttctatttctgcataa
acatcatgaccaagaagcagttggggaggaaaaggtttattcagcttaca
ctttctacattgctgttcatcaccaaaggaagtcaggactggaactcaac
aggtcagaagcagagctgatgcagaggccatggagggatgttctttactg
gcttgcttccctggcttgctcagcctgctttcttatagaaccaagactac
cagcctcgagatggtaccacccacaagggccttcctccttcatcactaat
tgaggaatgcttccagttggatctcatggagcatttccccactgagctct
tttccttgtggtaacctcagctgtgttcaggtgaccaaaactagc
gaattcaaggccagcctggtctacatatcaagttccaggccagccagacc
ctgcctcaaaaaaatcaaacaaaaagataataacaacaacaaaaagacaa
ctaatgaaattctgttttctgaacattattggatatcatagtcatcaact
caaaaatctgtataagactggcataagatccagcccgccaaatactcagc
acagatgggaaagtgttcttctggcttaagcctttctggagatattttat
ctgaaagccgccgggagagagagtatcctttgtcgtgtgtggccactggt
aggttccccataatcccgtggctaatcctcactcatgcacatatgggcaa
cactaactagacttagtgggttatttttttaaagttaaagaggggacata
aaattggaaggaggcaacttcttaagagaagatggaagggagaaatgggt
aaataagaccatgtttctttgcatacatgtatgaaactcgacaatgaaag
aaaaagtagtattaaaaaacttagcaggaatatttagaaagttagatggt
gtgaaagggtggcagctaaaagcctttaaaactgtgtcccagctaacgtc
gtcctgctggtctcaagagttaggctgtgtcctcaagcctctgcagaaac
ctaaactctgtgtccatggaactgggtgggaggagctgcagccttggatt
agctaacctgcaacacttcacccgagattcagatccacacgctcagggac
tcacacaaagcaagacctttttactttaaaaccccagctgcaatcagtgt
ccatactgactcataaagtcaaggttattattcagaaatagaaagatgtt
aagtcttccaaggacaacgatacccatgcttgggtctaaaagccctgcta
tttgtctttatttactaaataaacatttaatatagtctacatcatataat
gtactatttcttacaacatacaatcacagtgcccagacagagcaaggaca
gcaagatagggtaaaatggctttgagcttttaaacctccatctaccatat
tctaaacaaagtttaactaatcattcccttgaactactggttcacaatct
tactaacttatattcagaacggcatagctggataattcatgacctgaaga
tctaaaaatacccaaaatacctgtatctttgataagtccctcattcttta
ggctcatcttggtcatgagagctacaatcagtcagcgttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_137695169_137696325
seq2: B6Ng01-062N04.b_47_1191 (reverse)

seq1  GCTAGTTTTGTGTCAACTTGACACAGCTGGAGTTACCACAGGGAAAGGAG  50
      |||||||||| |||| ||  |||||||||  ||||||||| ||||| |||
seq2  GCTAGTTTTG-GTCACCTGAACACAGCTGAGGTTACCACAAGGAAAAGAG  49

seq1  CTTCAGTTGGGGAAATGCCTCCATGAGATCCAACTGGAAGGCATTTCCTC  100
      | |||| |||||||||| ||||||||||||||||||||| ||| ||||||
seq2  C-TCAG-TGGGGAAATG-CTCCATGAGATCCAACTGGAA-GCA-TTCCTC  94

seq1  AATTAGTGATGAAGGGGGAAAGGCCCCTTGTGGGTGGTACCATCTCGAGG  150
      ||||||||||||||| ||||  | ||||||||||||||||||||||||||
seq2  AATTAGTGATGAAGGAGGAA--GGCCCTTGTGGGTGGTACCATCTCGAGG  142

seq1  CTGGTAGTCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAAGC  200
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  CTGGTAGTCTTGGTTCTATAAGAAAGCAGGCTGAGCAAGCCA-GGGAAGC  191

seq1  AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCC  250
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCT-CTGCTT-C  239

seq1  TGACCTGTTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATG  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTG-TTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAATG  288

seq1  TAGAAAGTGTAAGCTGAATAAACCTTTTCCTCCCCAACTGCTTCTTGGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTGTAAGCTGAATAAACCTTTTCCTCCCCAACTGCTTCTTGGTC  338

seq1  ATGATGTTTATGCAGAAATAGAAACCCTGACTAAGACACTACTTTTATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTATGCAGAAATAGAAACCCTGACTAAGACACTACTTTTATGC  388

seq1  TTACTTACCAAGTCCCACTATGTTTTGCTTTTAGTTTGAAAAATCTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTACCAAGTCCCACTATGTTTTGCTTTTAGTTTGAAAAATCTTTTT  438

seq1  CTGTCTATAAGCTGGCACTTTTTTTTTTTTTTTTAACCTGTACATAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTATAAGCTGGCACTTTTTTTTTTTTTTTTAACCTGTACATAAGTA  488

seq1  TTATGGTTTTCCACCCAAGGAACTTAGCTAGCTGGATTTAGACACAAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTTTCCACCCAAGGAACTTAGCTAGCTGGATTTAGACACAAAGA  538

seq1  ACAGGAAGCAGTTTTGTTTTGTTCCTTGGGGAAAACAGGTGGACTGGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCAGTTTTGTTTTGTTCCTTGGGGAAAACAGGTGGACTGGGGC  588

seq1  TGCTTAAGTCAGTTCTAGAATGATTCAGTCACACATTCCGTTATTCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGTCAGTTCTAGAATGATTCAGTCACACATTCCGTTATTCTCAG  638

seq1  CTTGAGAGCTGTGGCTGAGCTGGGGTGGAGGAGAGCCTTAGCATTGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAGCTGTGGCTGAGCTGGGGTGGAGGAGAGCCTTAGCATTGCTCA  688

seq1  CCCAGACTGTGAAGGAGAGAGAGATGGACAGATGTTGGATTTTGGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTGTGAAGGAGAGAGAGATGGACAGATGTTGGATTTTGGATGCA  738

seq1  GCTGTTCTCATCTCGGTCTCTGTTCATGGAACTTGGGGTTGTGGGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTCATCTCGGTCTCTGTTCATGGAACTTGGGGTTGTGGGTAAGG  788

seq1  GTTGGGTCCAGGAGGTTTGTGTATGGTAGACAAGTAATTCCATCCCAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGTCCAGGAGGTTTGTGTATGGTAGACAAGTAATTCCATCCCAGTC  838

seq1  CCTCTACTTGGATGGTTTTATTCTCTGGCTACTCAGCTTGAGGAAACTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACTTGGATGGTTTTATTCTCTGGCTACTCAGCTTGAGGAAACTGC  888

seq1  AGAGTAAGATGATGAGGCATAAGATTATATGTGGAAGATTTTTCCTGCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGATGATGAGGCATAAGATTATATGTGGAAGATTTTTCCTGCAG  938

seq1  TAGAAAAACCTTCCTGATCTATACATTCTCATATTAAAATGTAAGGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAACCTTCCTGATCTATACATTCTCATATTAAAATGTAAGGTTAG  988

seq1  TAAGGTCCCTATTGAGTCTGTGTCTCAGCATTGTGGTGGAACTAGGAAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCCTATTGAGTCTGTGTCTCAGCATTGTGGTGGAACTAGGAAGC  1038

seq1  CTAGATAACCTGGTTAGGCAATCAAGGATAGAGTGTAAAAGAGCTCCATC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAACCTGGTTAGGCAATCAAGGATAGAGTGTAAAAGAGCTCCATC  1088

seq1  TGGTGGCCCTCCGTAGACATGGACGGAACTAGTTCCTCTAAAAGCAGGTG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCCCTCCGTAGACATGGACGGAACTAGTTCCTCTAAAAGCAGGTG  1138

seq1  TGAATTC  1157
      |||||||
seq2  TGAATTC  1145

seq1: chr6_137584142_137585418
seq2: B6Ng01-062N04.g_67_1306

seq1  GAATTCAAGGCCAGCCTGGTCTACATATCAAGTTCCAGGCCAGCCAGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACATATCAAGTTCCAGGCCAGCCAGACC  50

seq1  CTGCCTCAAAAAAATCAAACAAAAAGATAATAACAACAACAAAAAGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAAAAAAATCAAACAAAAAGATAATAACAACAACAAAAAGACAA  100

seq1  CTAATGAAATTCTGTTTTCTGAACATTATTGGATATCATAGTCATCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGAAATTCTGTTTTCTGAACATTATTGGATATCATAGTCATCAACT  150

seq1  CAAAAATCTGTATAAGACTGGCATAAGATCCAGCCCGCCAAATACTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCTGTATAAGACTGGCATAAGATCCAGCCCGCCAAATACTCAGC  200

seq1  ACAGATGGGAAAGTGTTCTTCTGGCTTAAGCCTTTCTGGAGATATTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGGAAAGTGTTCTTCTGGCTTAAGCCTTTCTGGAGATATTTTAT  250

seq1  CTGAAAGCCGCCGGGAGAGAGAGTATCCTTTGTCGTGTGTGGCCACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCCGCCGGGAGAGAGAGTATCCTTTGTCGTGTGTGGCCACTGGT  300

seq1  AGGTTCCCCATAATCCCGTGGCTAATCCTCACTCATGCACATATGGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCCCCATAATCCCGTGGCTAATCCTCACTCATGCACATATGGGCAA  350

seq1  CACTAACTAGACTTAGTGGGTTATTTTTTTAAAGTTAAAGAGGGGACATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACTAGACTTAGTGGGTTATTTTTTTAAAGTTAAAGAGGGGACATA  400

seq1  AAATTGGAAGGAGGCAACTTCTTAAGAGAAGATGGAAGGGAGAAATGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGAAGGAGGCAACTTCTTAAGAGAAGATGGAAGGGAGAAATGGGT  450

seq1  AAATAAGACCATGTTTCTTTGCATACATGTATGAAACTCGACAATGAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGACCATGTTTCTTTGCATACATGTATGAAACTCGACAATGAAAG  500

seq1  AAAAAGTAGTATTAAAAAACTTAGCAGGAATATTTAGAAAGTTAGATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAGTATTAAAAAACTTAGCAGGAATATTTAGAAAGTTAGATGGT  550

seq1  GTGAAAGGGTGGCAGCTAAAAGCCTTTAAAACTGTGTCCCAGCTAACGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGGGTGGCAGCTAAAAGCCTTTAAAACTGTGTCCCAGCTAACGTC  600

seq1  GTCCTGCTGGTCTCAAGAGTTAGGCTGTGTCCTCAAGCCTCTGCAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTGGTCTCAAGAGTTAGGCTGTGTCCTCAAGCCTCTGCAGAAAC  650

seq1  CTAAACTCTGTGTCCATGGAACTGGGTGGGAGGAGCTGCAGCCTTGGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCTGTGTCCATGGAACTGGGTGGGAGGAGCTGCAGCCTTGGATT  700

seq1  AGCTAACCTGCAACACTTCACCCGAGATTCAGATCCACACGCTCAGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAACCTGCAACACTTCACCCGAGATTCAGATCCACACGCTCAGGGAC  750

seq1  TCACACAAAGCAAGACCTTTTTACTTTAAAACCCCAGCTGCAATCAGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACAAAGCAAGACCTTTTTACTTTAAAACCCCAGCTGCAATCAGTGT  800

seq1  CCATACTGACTCATAAAGTCAAGGTTATTATTCAGAAATAGAAAGATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTGACTCATAAAGTCAAGGTTATTATTCAGAAATAGAAAGATGTT  850

seq1  AAGTCTTCCAAGGACAACGATACCCATGCTTGGGTCTAAAAGCCCTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTCCAAGGACAACGATACCCATGCTTGGGTCTAAAAGCCCTGCTA  900

seq1  TTTTGTCTTTATTTACTAAATAAACATTTAATATAGTCTTACATCATATA  950
       ||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  -TTTGTCTTTATTTACTAAATAAACATTTAATATAGTC-TACATCATATA  948

seq1  ATGTACTATTTCTTACAACATACAATCACAGTGCCCAGACAGAGCAAGGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTATTTCTTACAACATACAATCACAGTGCCCAGACAGAGCAAGGA  998

seq1  CAGCAAGATAGGGTAAAAATGGCTTTGAGCTCTTAAACCTCCATCTACCA  1050
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  CAGCAAGATAGGGT-AAAATGGCTTTGAGCTTTTAAACCTCCATCTACCA  1047

seq1  TATTCTACACAAAGTTTTTACCTAATCATTCCCACTTGAACTACTGGTTC  1100
      ||||||| ||||||  |||| |||||||||||  ||||||||||||||||
seq2  TATTCTAAACAAAG--TTTAACTAATCATTCC--CTTGAACTACTGGTTC  1093

seq1  ACAATCTTACTTAAACTTATATTTCAAGACAGCAATAGCTTGATTATATC  1150
      |||||||||||  |||||||| ||||  || || |||||| ||| || ||
seq2  ACAATCTTACT--AACTTATA-TTCAGAACGGC-ATAGCTGGATAAT-TC  1138

seq1  AATGACCCTGAAGATCATAAAATAACCCAAAATATAACTGATACCTATTG  1200
       |||| |||||||||| |||||  |||||||  ||| ||| || || |||
seq2  -ATGA-CCTGAAGATC-TAAAAATACCCAAA--ATACCTG-TATCT-TTG  1181

seq1  GATTAAGTCACTCCATATCTTTAGGTCTTCCATCCTTTGGTCCAATGAGA  1250
         |||||| || ||| |||||||| ||  ||||  ||||||  ||||||
seq2  --ATAAGTCCCT-CAT-TCTTTAGG-CT--CATC--TTGGTC--ATGAGA  1220

seq1  GCTGACAGAATCAGGTCTCAGCTGTTC  1277
      |||   | ||||||   ||||| ||||
seq2  GCT---ACAATCAG---TCAGC-GTTC  1240