BAC Information

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BAC

Clone NameB6Ng01-063A03
Chromosome6 (Build37)
Map Location 8,205,604 - 8,324,217
singlet/doubletdoublet
Overlap geneRpa3, LOC100036521
Upstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002
Downstream geneLOC667028, A430035B10Rik, Glcci1, Ica1, LOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063A03.bB6Ng01-063A03.g
ACCDH883233DH883234
length1,1721,099
definitionDH883233|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A03, 5' end.DH883234|Mus musculus domesticus DNA, BAC clone: B6Ng01-063A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,323,025 - 8,324,217)(8,205,604 - 8,206,735)
sequence
gaattctcaaaattctctcaaaaatagactgctctaactcaagaactcta
cttttctctcttaccccctcctctttcatttcttgacccagaaaccccac
aagagctgggcagcctctcccagcagctagctcagcgctgctctcactga
cccccggcttctccgtgtgagttgttgctgtgaatcagccagagactctg
cacgcagagccatcggttgcatcccgggattcccgctgccttttccttac
ctccaaagcctggctgccttctgcttcagaagttttacatctcacttcat
ttgctgtagctcctataagacagaggagaactcttctgttataaggacaa
ttttcttgggtttgtttgcagtgttttttggtactgtacgcttcatgcta
tggaagcaaccactatttcctttgttacagagtaaacaaattaattttaa
ggagaaagaaaatatattttttcacggatatcatgaatcattccataaac
acacactaaaatgtatcctgctttacacaggtttacactgaaaaaagaac
atcaatttgaattgtgtttatcaagtcatgttttaattaagaaagctatg
acttaaagacacgcaaactattttaaaatgcaaatttccttatgacatga
gtaattgtcctctaaacttgttttcataaaattaatccttatgactttta
ttttcttcttttgttcctatggataaaagtagatatgcatatttctgtgt
gacagtaaacccaatagaagacaatcttcacagcaggaaagaacatgagc
aaacacataaagagccttcagttagtaacacgagttctaagtctggtgcc
tctgcagattccattgctaaattaacttggagcagctgacttacacgaca
cagaatagatccacagttgagcaagtataatcataacaagttattaatgg
cctgccttagtttgctattactaataattgggattggcacatggtcagta
catacccaattagcctacttttctgaagcataatcagaaactatttagta
atttgtaaattgttcttgcatacataaggtcattagaatgtccaaaaagt
ggagctgactgatccagtagactgtgcgaatgatagggagtatgaactca
gtccagatggaaccggaaagct

gaattccatactaagaataatggcaagcttaaaggcacgaagaaaaagtc
aaagattctgccaaccctacgatcacctgtttggcagtggtctatacaca
ttttagaatccaaaatgaagaaattgacaaattggatacacgcctgttct
tttcattcaccaaaagcattttctaaataagctactaaggaataatcagc
atggtagatggtaagaaaatctatagcatggctagctggcccaggcttct
atttggtagatataagaccaaaccttatagttacaaaactccaagcttga
gactgaaaaataaaaacaattgaccaacagcatcatattttgatttttat
tattcagactatatattgaagtatcacttttaaaaaaagtttataaaaag
gcttagttgtaaactgtcataatagatttacaaaaaaatatatatatata
aaagaacaaattaaatattagaaattataggagtcgctccattaaactgc
aggagtcttccttaatagccttcagtgtagcttcctggcaatcttaagaa
actgaagaagctcattcatgttgtggaagccctacagggaaaaactgagg
aagctcattgataattttcacagcttcattgtaaagttcaagatctgaaa
gaaacatttaagcaaacacttaatctacagtggactctgcagtatcaact
gttacctgaagtatttctatgtctttccttgtgagaagtcgacttacttt
cacaacccatgtttatttaactgtggtactagcaaagactggagagatgg
taaaccattaaagtcgttttatgctggggtcatactttcagtgttactat
actgttctagttgtccaactcatatattaaaatattaatttatcatattt
taagtcctttttattctatactagcggtattatgttttcttacacacaga
tgactattacaagtctattctcattttatggaatgaaatatacaaactga
gattagatcaaaactaataaaagttttctatcatgagactgctgaacagt
acggtgctttactccaacgatagtatcttcttaacaggtataagatgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8323025_8324217
seq2: B6Ng01-063A03.b_46_1217 (reverse)

seq1  AGCTTTCCGTGCTCCATCTCGACTTGATGTTCATTACTCTCCTTATCATC  50
      ||||||||| | ||||||| ||| ||| ||||||    |||| |||||| 
seq2  AGCTTTCCG-GTTCCATCTGGAC-TGA-GTTCAT---ACTCCCTATCATT  44

seq1  TGCACAGTCCTTACCTGTGATTTCAGTCAGCT-CACTGTTCTGGACATTC  99
       ||||||||  || ||| ||  |||||||||| |||| || |||||||||
seq2  CGCACAGTC--TA-CTG-GA--TCAGTCAGCTCCACT-TTTTGGACATTC  87

seq1  TTAAATTGACCTAATTGTATGGCAAGAACAATTTACAAATTACTAAATTA  149
      |   | |||||| | ||||| |||||||||||||||||||||||||| ||
seq2  T---AATGACCTTA-TGTAT-GCAAGAACAATTTACAAATTACTAAA-TA  131

seq1  GTTTCTGATTATGCTTCAGAGAAGTAGGCTAATTGGGTATGTACTGACCA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTTCTGATTATGCTTCAGAAAAGTAGGCTAATTGGGTATGTACTGACCA  181

seq1  TGTGCCAATTCCCAATTATTAGTAATTAGCAAACTAAGGCAGGCCATTAA  249
      |||||||| |||||||||||||||| ||||||||||||||||||||||||
seq2  TGTGCCAA-TCCCAATTATTAGTAA-TAGCAAACTAAGGCAGGCCATTAA  229

seq1  TAACTTGTTATGATTATACTTGCTCAACTGTGGATCTATTCTGTGTCGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTATGATTATACTTGCTCAACTGTGGATCTATTCTGTGTCGTG  279

seq1  TAAGTCAGCCTGCTCCAAGTTAATTTAGCAATGGAATCTGCAGAGGCACC  349
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCAG-CTGCTCCAAGTTAATTTAGCAATGGAATCTGCAGAGGCACC  328

seq1  AGACTTAGAACTCGTGTTACTAACTGAAGGCTCTTTATGTGTTTGCTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGAACTCGTGTTACTAACTGAAGGCTCTTTATGTGTTTGCTCAT  378

seq1  GTTCTTTCCTGCTGTGAAGATTGTCTTCTATTGGGTTTACTGTCACACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCCTGCTGTGAAGATTGTCTTCTATTGGGTTTACTGTCACACAG  428

seq1  AAATATGCATATCTACTTTTATCCATAGGAACAAAAGAAGAAAATAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGCATATCTACTTTTATCCATAGGAACAAAAGAAGAAAATAAAAG  478

seq1  TCATAAGGATTAATTTTATGAAAACAAGTTTAGAGGACAATTACTCATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAGGATTAATTTTATGAAAACAAGTTTAGAGGACAATTACTCATGT  528

seq1  CATAAGGAAATTTGCATTTTAAAATAGTTTGCGTGTCTTTAAGTCATAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAAATTTGCATTTTAAAATAGTTTGCGTGTCTTTAAGTCATAGC  578

seq1  TTTCTTAATTAAAACATGACTTGATAAACACAATTCAAATTGATGTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATTAAAACATGACTTGATAAACACAATTCAAATTGATGTTCTT  628

seq1  TTTTCAGTGTAAACCTGTGTAAAGCAGGATACATTTTAGTGTGTGTTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTGTAAACCTGTGTAAAGCAGGATACATTTTAGTGTGTGTTTAT  678

seq1  GGAATGATTCATGATATCCGTGAAAAAATATATTTTCTTTCTCCTTAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGATTCATGATATCCGTGAAAAAATATATTTTCTTTCTCCTTAAAA  728

seq1  TTAATTTGTTTACTCTGTAACAAAGGAAATAGTGGTTGCTTCCATAGCAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGTTTACTCTGTAACAAAGGAAATAGTGGTTGCTTCCATAGCAT  778

seq1  GAAGCGTACAGTACCAAAAAACACTGCAAACAAACCCAAGAAAATTGTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCGTACAGTACCAAAAAACACTGCAAACAAACCCAAGAAAATTGTCC  828

seq1  TTATAACAGAAGAGTTCTCCTCTGTCTTATAGGAGCTACAGCAAATGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACAGAAGAGTTCTCCTCTGTCTTATAGGAGCTACAGCAAATGAAG  878

seq1  TGAGATGTAAAACTTCTGAAGCAGAAGGCAGCCAGGCTTTGGAGGTAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTAAAACTTCTGAAGCAGAAGGCAGCCAGGCTTTGGAGGTAAGG  928

seq1  AAAAGGCAGCGGGAATCCCGGGATGCAACCGATGGCTCTGCGTGCAGAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAGCGGGAATCCCGGGATGCAACCGATGGCTCTGCGTGCAGAGT  978

seq1  CTCTGGCTGATTCACAGCAACAACTCACACGGAGAAGCCGGGGGTCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGATTCACAGCAACAACTCACACGGAGAAGCCGGGGGTCAGTG  1028

seq1  AGAGCAGCGCTGAGCTAGCTGCTGGGAGAGGCTGCCCAGCTCTTGTGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCGCTGAGCTAGCTGCTGGGAGAGGCTGCCCAGCTCTTGTGGGG  1078

seq1  TTTCTGGGTCAAGAAATGAAAGAGGAGGGGGTAAGAGAGAAAAGTAGAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGTCAAGAAATGAAAGAGGAGGGGGTAAGAGAGAAAAGTAGAGT  1128

seq1  TCTTGAGTTAGAGCAGTCTATTTTTGAGAGAATTTTGAGAATTC  1193
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAGTTAGAGCAGTCTATTTTTGAGAGAATTTTGAGAATTC  1172


seq1: chr6_8205604_8206735
seq2: B6Ng01-063A03.g_67_1165

seq1  GAATTCCATACTAAGAATAATGGCAAGCTTAAAGGCACGAAGAAAAAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACTAAGAATAATGGCAAGCTTAAAGGCACGAAGAAAAAGTC  50

seq1  AAAGATTCTGCCAACCCTACGATCACCTGTTTGGCAGTGGTCTATACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCTGCCAACCCTACGATCACCTGTTTGGCAGTGGTCTATACACA  100

seq1  TTTTAGAATCCAAAATGAAGAAATTGACAAATTGGATACACGCCTGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAATCCAAAATGAAGAAATTGACAAATTGGATACACGCCTGTTCT  150

seq1  TTTCATTCACCAAAAGCATTTTCTAAATAAGCTACTAAGGAATAATCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCACCAAAAGCATTTTCTAAATAAGCTACTAAGGAATAATCAGC  200

seq1  ATGGTAGATGGTAAGAAAATCTATAGCATGGCTAGCTGGCCCAGGCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGATGGTAAGAAAATCTATAGCATGGCTAGCTGGCCCAGGCTTCT  250

seq1  ATTTGGTAGATATAAGACCAAACCTTATAGTTACAAAACTCCAAGCTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAGATATAAGACCAAACCTTATAGTTACAAAACTCCAAGCTTGA  300

seq1  GACTGAAAAATAAAAACAATTGACCAACAGCATCATATTTTGATTTTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAAAATAAAAACAATTGACCAACAGCATCATATTTTGATTTTTAT  350

seq1  TATTCAGACTATATATTGAAGTATCACTTTTAAAAAAAGTTTATAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAGACTATATATTGAAGTATCACTTTTAAAAAAAGTTTATAAAAAG  400

seq1  GCTTAGTTGTAAACTGTCATAATAGATTTACAAAAAAATATATATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTGTAAACTGTCATAATAGATTTACAAAAAAATATATATATATA  450

seq1  AAAGAACAAATTAAATATTAGAAATTATAGGAGTCGCTCCATTAAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAAATTAAATATTAGAAATTATAGGAGTCGCTCCATTAAACTGC  500

seq1  AGGAGTCTTCCTTAATAGCCTTCAGTGTAGCTTCCTGGCAATCTTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTTCCTTAATAGCCTTCAGTGTAGCTTCCTGGCAATCTTAAGAA  550

seq1  ACTGAAGAAGCTCATTCATGTTGTGGAAGCCCTACAGGGAAAAACTGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAGCTCATTCATGTTGTGGAAGCCCTACAGGGAAAAACTGAGG  600

seq1  AAGCTCATTGATAATTTTCACAGCTTCATTGTAAAGTTCAAGATCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCATTGATAATTTTCACAGCTTCATTGTAAAGTTCAAGATCTGAAA  650

seq1  GAAACATTTAAGCAAACACTTAATCTACAGTGGACTCTGCAGTATCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTAAGCAAACACTTAATCTACAGTGGACTCTGCAGTATCAACT  700

seq1  GTTACCTGAAGTATTTCTATGTCTTTCCTTGTGAGAAGTCGACTTACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTGAAGTATTTCTATGTCTTTCCTTGTGAGAAGTCGACTTACTTT  750

seq1  CACAACCCATGTTTATTTAACTGTGGTACTAGCAAAGACTGGAGAGATGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCCATGTTTATTTAACTGTGGTACTAGCAAAGACTGGAGAGATGG  800

seq1  TAAACCATTAAAGTCGTTTTATGCTGGGGTCATACTTTCAGTGTTACTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTAAAGTCGTTTTATGCTGGGGTCATACTTTCAGTGTTACTAT  850

seq1  ACTGTTCTAG-TGTCCAACTCATATATTAAAATATTAATTTTATCATATT  899
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  ACTGTTCTAGTTGTCCAACTCATATATTAAAATATTAA-TTTATCATATT  899

seq1  TTAAGTCCTTTTTATTCTATAACTAGCGGTATTTATTGTTTTCTTTACAC  949
      |||||||||||||||||||| ||||||||||||   ||||||| ||||||
seq2  TTAAGTCCTTTTTATTCTAT-ACTAGCGGTATT--ATGTTTTC-TTACAC  945

seq1  ACAAGGAATGACTAATTTACAAGGTCTATTCTCATTTTATAGAAATTGAA  999
      |||    |||||||  |||||| ||||||||||||||||| |||  || |
seq2  ACA---GATGACTA--TTACAA-GTCTATTCTCATTTTATGGAA--TG-A  986

seq1  AATATACCAAAACTGAGATTTTAGATCAAAAACCTTAAATAAAAGTTTTC  1049
      |||||||  |||||||||  |||||||||||  ||  |||||||||||||
seq2  AATATAC--AAACTGAGA--TTAGATCAAAA--CT--AATAAAAGTTTTC  1028

seq1  TCCTATTCATGAGACTGCTGAACAGTACGGTGCTTTACTCACCAAAGCGA  1099
      |     |||||||||||||||||||||||||||||||||  ||||  |||
seq2  T----ATCATGAGACTGCTGAACAGTACGGTGCTTTACT--CCAA--CGA  1070

seq1  TTAGTATCTTCCTTAAACAGGGTATAAGATGCA  1132
       ||||||||||  | |||| |||||||||||||
seq2  -TAGTATCTTC--TTAACA-GGTATAAGATGCA  1099


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