BAC Information

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BAC

Clone NameB6Ng01-063F07
Chromosome6 (Build37)
Map Location 40,627,529 - 40,776,976
singlet/doubletdoublet
Overlap geneMgam, EG638904
Upstream geneBraf, Mrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138
Downstream geneMoxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063F07.bB6Ng01-063F07.g
ACCDH883459DH883460
length1,1251,069
definitionDH883459|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F07, 5' end.DH883460|Mus musculus domesticus DNA, BAC clone: B6Ng01-063F07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,775,835 - 40,776,976)(40,627,529 - 40,628,594)
sequence
gaattcttactaagaaacaccacgatgatcagtggggaaatataccttta
gacacaccatcatcccagtacagctggccctttgcctcgcgcttataatc
caaagcaatgatgagtcccatgggattcttccggctgacgagaacaattc
caagtttcagacaatgaacaaaggcagaaacagattaatttggcccttga
tgattctaccccttgatgcctaggggtgtatcctccagagtctatcccag
aaactgagtagatgttagcattttgtaaaaacacggtgtgaaaaagtagc
agaatgtggaaaagagagaatgtaagaacaacggtggggtgaggtgggtt
tgtgatcattttaacaaggctgattagaccctgtgacaggcactgttgta
agtgtgctccagatactgtcctttatattaattcagttagccctcacaaa
ggtgaggccatcatcccctccagtttaccagtagcaagtgtggacacaga
cacactgtccaacgctaacacatgtaggatgttttcaggccagagtttga
actaaaattctgctgcagaatctgagccctgaaactccaaacaatattga
cttttgccccctactaaattcttctcatgtattggcagatacaccttaag
ataatgtctgaccatagggaaactcttatgaagattattttgatcattcc
tatcatctgattcaatccaaatagacaaaatacaaaaaaatgaaaaagaa
agtgagactatgtttatcactctaaagacaatttgaggccagccttgaaa
ggagaagattgctgacagtagtggtatttcatttggcccatgtactcttg
atccttgcttgtttcccccatgaagcctcactaagcttcagagtagtaat
aagacacaggaacttacctgtcgtttgtggttctgcttggctcctgggtg
ggaaatatgtagccacctcgaaggtgaagtctatcctgtcacttggtaat
ggcatgtctataaattgttccttggttggatagcagtccttagcacaaaa
ggaacgatcagaaggagactgcacaggaaaaccctaaagattctctactc
agtcacttaccttagaacaaaagat
gaattccaggaaattaaaatctttggaacacgggaattccgcaatgttag
agtgaaacagaatgggaatctccttcaaatgtctcctcaagtcacttaca
atccaaacctgaaggtaagaattgcttttgtgaggaagctttccacaaac
ctccatggggccatgatacttcttgctaaggtcacatgggctgctgaagg
accagagcacttctgaggccaggtgaggaggttagagtattggagaagga
aggttaaaaacagagatgttgaagccaacgtggctccaggttttcccatc
cttatttttctcactcattttttttttcctaactggatgtggggacacga
tccaacgaagagactctgaaagttgatggcttgtgctctaaggtgaaggg
agagagagagagagagagagagagagagagagagagagagagagagacag
agagagagacagagagagagacagagagagagacagagagagagacagag
agagaaagagagagagagagagagagatcgatcacaggtcttttatttat
ttaatttttaatgttcctttccttttcgtatgctttattaagacatcaca
tgttccctatcatatgcatttccaagaaatattttgtggaaaaaggattg
atggtgctaactaacatggacggtgattagacagtggaattctccagatg
taatggggtccactgttttctgtatgactttgtcttccattcctttactt
cctcagtcctgtgaggaccctttcctgagtcaattctgatggcttctcct
ggaggctcctcacggaaccagagtgctgaatcaatactgattgagggatc
tttttaagtttgagtttacctgtcaactgagacatttattaatggcatat
tgatcacacttgagatttattatgacatacataaagagatatatatttta
cttagttacatataaaggattatgtggctgtttcagtctggggcaaaatg
taagacagctgaaaaaatcatatgtgaaacacatgattgtttatgaacaa
aaaaataaaaaatttaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_40775835_40776976
seq2: B6Ng01-063F07.b_45_1169 (reverse)

seq1  ATCTTCTTGTCTCTAAGGTAAAGTTGACTGAAGTAGAGGATCTTTAGGGT  50
      ||||| |||| ||||||||||   |||||| ||||||| |||||||||| 
seq2  ATCTT-TTGT-TCTAAGGTAA--GTGACTG-AGTAGAGAATCTTTAGGG-  44

seq1  TTTTCCTGGCTGCAGTCTCCTATCTGGTCTGTTTTCCTTTTGTTGCTTAG  100
      ||||||||  ||||||||||| |||| ||    ||||||||| ||| || 
seq2  TTTTCCTG--TGCAGTCTCCT-TCTGATC---GTTCCTTTTG-TGC-TAA  86

seq1  GGACTGGCTATCCAACCAAGGAAACAATTTATAGACATGCCATTACCAAG  150
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGACT-GCTATCCAACCAAGG-AACAATTTATAGACATGCCATTACCAAG  134

seq1  TGACAGGATAGGACTTCACCTTCGAGGTGGCTACATATTTCCCACCCAGG  200
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGATA-GACTTCACCTTCGAGGTGGCTACATATTTCCCACCCAGG  183

seq1  AGCCAAGCAGAACCACAAACGACAGGTAAGTTCCTGTGTCTTATTACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGCAGAACCACAAACGACAGGTAAGTTCCTGTGTCTTATTACTAC  233

seq1  TCTGAAGCTTAGTGAGGCTTCATGGGGGAAACAAGCAAGGATCAAGAGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCTTAGTGAGGCTTCATGGGGGAAACAAGCAAGGATCAAGAGTA  283

seq1  CATGGGCCAAATGAAATACCACTACTGTCAGCAATCTTCTCCTTTCAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCAAATGAAATACCACTACTGTCAGCAATCTTCTCCTTTCAAGG  333

seq1  CTGGCCTCAAATTGTCTTTAGAGTGATAAACATAGTCTCACTTTCTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCAAATTGTCTTTAGAGTGATAAACATAGTCTCACTTTCTTTTT  383

seq1  CATTTTTTTGTATTTTGTCTATTTGGATTGAATCAGATGATAGGAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTGTATTTTGTCTATTTGGATTGAATCAGATGATAGGAATGAT  433

seq1  CAAAATAATCTTCATAAGAGTTTCCCTATGGTCAGACATTATCTTAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATCTTCATAAGAGTTTCCCTATGGTCAGACATTATCTTAAGGT  483

seq1  GTATCTGCCAATACATGAGAAGAATTTAGTAGGGGGCAAAAGTCAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTGCCAATACATGAGAAGAATTTAGTAGGGGGCAAAAGTCAATATT  533

seq1  GTTTGGAGTTTCAGGGCTCAGATTCTGCAGCAGAATTTTAGTTCAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGTTTCAGGGCTCAGATTCTGCAGCAGAATTTTAGTTCAAACTC  583

seq1  TGGCCTGAAAACATCCTACATGTGTTAGCGTTGGACAGTGTGTCTGTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGAAAACATCCTACATGTGTTAGCGTTGGACAGTGTGTCTGTGTC  633

seq1  CACACTTGCTACTGGTAAACTGGAGGGGATGATGGCCTCACCTTTGTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTGCTACTGGTAAACTGGAGGGGATGATGGCCTCACCTTTGTGAG  683

seq1  GGCTAACTGAATTAATATAAAGGACAGTATCTGGAGCACACTTACAACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTGAATTAATATAAAGGACAGTATCTGGAGCACACTTACAACAG  733

seq1  TGCCTGTCACAGGGTCTAATCAGCCTTGTTAAAATGATCACAAACCCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTCACAGGGTCTAATCAGCCTTGTTAAAATGATCACAAACCCACC  783

seq1  TCACCCCACCGTTGTTCTTACATTCTCTCTTTTCCACATTCTGCTACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCACCGTTGTTCTTACATTCTCTCTTTTCCACATTCTGCTACTTT  833

seq1  TTCACACCGTGTTTTTACAAAATGCTAACATCTACTCAGTTTCTGGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCGTGTTTTTACAAAATGCTAACATCTACTCAGTTTCTGGGATA  883

seq1  GACTCTGGAGGATACACCCCTAGGCATCAAGGGGTAGAATCATCAAGGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGGAGGATACACCCCTAGGCATCAAGGGGTAGAATCATCAAGGGC  933

seq1  CAAATTAATCTGTTTCTGCCTTTGTTCATTGTCTGAAACTTGGAATTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAATCTGTTTCTGCCTTTGTTCATTGTCTGAAACTTGGAATTGTT  983

seq1  CTCGTCAGCCGGAAGAATCCCATGGGACTCATCATTGCTTTGGATTATAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAGCCGGAAGAATCCCATGGGACTCATCATTGCTTTGGATTATAA  1033

seq1  GCGCGAGGCAAAGGGCCAGCTGTACTGGGATGATGGTGTGTCTAAAGGTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCGAGGCAAAGGGCCAGCTGTACTGGGATGATGGTGTGTCTAAAGGTA  1083

seq1  TATTTCCCCACTGATCATCGTGGTGTTTCTTAGTAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCCCACTGATCATCGTGGTGTTTCTTAGTAAGAATTC  1125

seq1: chr6_40627529_40628594
seq2: B6Ng01-063F07.g_65_1133

seq1  GAATTCCAGGAAATTAAAATCTTTGGAACACGGGAATTCCGCAATGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAAATTAAAATCTTTGGAACACGGGAATTCCGCAATGTTAG  50

seq1  AGTGAAACAGAATGGGAATCTCCTTCAAATGTCTCCTCAAGTCACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACAGAATGGGAATCTCCTTCAAATGTCTCCTCAAGTCACTTACA  100

seq1  ATCCAAACCTGAAGGTAAGAATTGCTTTTGTGAGGAAGCTTTCCACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAACCTGAAGGTAAGAATTGCTTTTGTGAGGAAGCTTTCCACAAAC  150

seq1  CTCCATGGGGCCATGATACTTCTTGCTAAGGTCACATGGGCTGCTGAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGGGGCCATGATACTTCTTGCTAAGGTCACATGGGCTGCTGAAGG  200

seq1  ACCAGAGCACTTCTGAGGCCAGGTGAGGAGGTTAGAGTATTGGAGAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGCACTTCTGAGGCCAGGTGAGGAGGTTAGAGTATTGGAGAAGGA  250

seq1  AGGTTAAAAACAGAGATGTTGAAGCCAACGTGGCTCCAGGTTTTCCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAAAACAGAGATGTTGAAGCCAACGTGGCTCCAGGTTTTCCCATC  300

seq1  CTTATTTTTCTCACTCATTTTTTTTTTCCTAACTGGATGTGGGGACACGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTTCTCACTCATTTTTTTTTTCCTAACTGGATGTGGGGACACGA  350

seq1  TCCAACGAAGAGACTCTGAAAGTTGATGGCTTGTGCTCTAAGGTGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACGAAGAGACTCTGAAAGTTGATGGCTTGTGCTCTAAGGTGAAGGG  400

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG  450

seq1  AGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAGAGAGAGACAGAG  500

seq1  AGAGAAAGAGAGAGAGAGAGAGAGAGATCGATCACAGGTCTTTTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAGAGAGAGAGAGAGAGATCGATCACAGGTCTTTTATTTAT  550

seq1  TTAATTTTTAATGTTCCTTTCCTTTTCGTATGCTTTATTAAGACATCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTAATGTTCCTTTCCTTTTCGTATGCTTTATTAAGACATCACA  600

seq1  TGTTCCCTATCATATGCATTTCCAAGAAATATTTTGTGGAAAAAGGATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTATCATATGCATTTCCAAGAAATATTTTGTGGAAAAAGGATTG  650

seq1  ATGGTGCTAACTAACATGGACGGTGATTAGACAGTGGAATTCTCCAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGCTAACTAACATGGACGGTGATTAGACAGTGGAATTCTCCAGATG  700

seq1  TAATGGGGTCCACTG-TTTCTGTATGAC-TTGTCTTCCATTCCTTTACTT  748
      ||||||||||||||| |||||||||||| |||||||||||||||||||||
seq2  TAATGGGGTCCACTGTTTTCTGTATGACTTTGTCTTCCATTCCTTTACTT  750

seq1  CCTCAGTCCTGTGAGGAACCTTTCCTGAGTCAATTCTGATGGCTTCTCCT  798
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CCTCAGTCCTGTGAGGACCCTTTCCTGAGTCAATTCTGATGGCTTCTCCT  800

seq1  -GAGGCTCCTCACGGAACCAGAGTGCTGAATCAATACTGATTGA-GGATC  846
       ||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGAGGCTCCTCACGGAACCAGAGTGCTGAATCAATACTGATTGAGGGATC  850

seq1  -TTTTAAGTTTGAGTTTACCTGTCAACTGAGACATTTATTAAATGGCATA  895
       ||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTAAGTTTGAGTTTACCTGTCAACTGAGACATTTATT-AATGGCATA  899

seq1  TTGATCACACTTGAGATTTTATTATGACAATACATAAAAGAGATATATAT  945
      |||||||||||||||| ||||||||||| |||||| ||||||||||||||
seq2  TTGATCACACTTGAGA-TTTATTATGAC-ATACAT-AAAGAGATATATAT  946

seq1  TTTACTAAGTTACATATAAAGGATTATGTGGCTGTTTCAGTCTGTGGCAA  995
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTACTTAGTTACATATAAAGGATTATGTGGCTGTTTCAGTCTGGGGCAA  996

seq1  AGTGTAAGACAGCTGAAAGATACATATGTG-AATACATGATTTGTTTATG  1044
      | |||||||||||||||| |  |||||||| || |||||| |||||||||
seq2  AATGTAAGACAGCTGAAAAAATCATATGTGAAACACATGA-TTGTTTATG  1045

seq1  A--CAGAAAATAAGATATTTAACA  1066
      |   | ||||||| | ||||||||
seq2  AACAAAAAAATAAAAAATTTAACA  1069