BAC Information

Click to search

BAC

Clone NameB6Ng01-065K24
Chromosome6 (Build37)
Map Location 106,495,223 - 106,495,586
singlet/doubletsinglet
Overlap geneCntn4
Upstream geneLOC100043350
Downstream geneIl5ra, Trnt1, Crbn, Ppia-ps6_1128.1, Lrrn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065K24.bB6Ng01-065K24.g
ACCDH885089DH885090
length1,158900
definitionDH885089|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K24, 5' end.DH885090|Mus musculus domesticus DNA, BAC clone: B6Ng01-065K24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggtatatcgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgctggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagacgctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacgatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatgggcctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttagagacaaagtttggagctgagatgaaa
ggatggaccatgtagagactgccatacccagggatccaccccataatcag
catccaaacgctgacaccattgcatacactagcaagattttttgaaagga
cccagatgtagctgtctcttgtgagactatgccgggcctagcaaacacag
aagtggatgctcacagtcagctatagatggatcacagggtccccaatgga
ggagctagagaaagtagccaagagctaaaggatctgcaaccttataggtg
gaacaacatatgaactaaccagtacctggagcctctgactctagctgcat
tatgtatcaaagatggctattcgccatcacatggagagaaggccatggac
acgccaatttatatgctcagttcatggaaccgcaggccaaaagggggatg
tgtggtag
gaattccttgtttagttctgtaccccattttttaaaaagggttatttggc
tttctggagtccaacttcttgagctctctctctctctttatatatatgaa
tgatattaatcccctatcagatttaggattggtaaatatctttccccagt
ctgttggtggcctttttgtcttatcgacagtgtcttttgctttacagaag
cttttcaattttatgaggtcccatttgttgattcttgatcttacagcaca
aggcattgctgttctcttctgttcaggattttttccctctgtgcccatat
cttcgaggcttttcccactttctcctccataagtttctggttttatgtgg
aggtctttgatccacttagacttgagctttgtagaaggagataagaatgg
atcaatttgcattcttctatatgctaacagccagttgagccagcaccatt
tgttgaagatgctgtcttctttccactgaatggttttagctcccttgtca
aagatcaagtgaccataggtgtgtgggttcatttctaggtcttcaattct
attccattgttctacctatctgtcgctgtaccagtaccatgcagttttta
tcacaattgctctgtagtacagcttgaggtcagggatggtgattccacca
gaggttcttctattgttgagaagttttttgttttgtttttttaaaggatg
ttgatttgcatcctgtaatcactttccctcaatgcttcttggcctctatg
acattaattgttttctctgttctaccatacaccctgctctcttgttgcca
ttatggattgagtcctctaaactatgaactgaatcaagtaatttctctaa
gttgtttatgttatacttggtcagagtatgtgaataccagcatgtctctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_106495223_106495586
seq2: B6Ng01-065K24.g_299_655 (reverse)

seq1  GTACTGGTATACTGACAGATAAGTAGACCAATGGAATAGAATTGAAGACC  50
      ||||||||| |  |||||||| ||||| ||||||||||||||||||||||
seq2  GTACTGGTACAGCGACAGATAGGTAGAACAATGGAATAGAATTGAAGACC  50

seq1  CAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCT  100
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGAAATGAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCT  100

seq1  AAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAATGGTGCTGGCA  150
      |||||||| ||||||||  |||||||||| ||||||||||||||||||| 
seq2  AAAACCATTCAGTGGAAAGAAGACAGCATCTTCAACAAATGGTGCTGGCT  150

seq1  CAACTGGTTGTTATCATGTAGGAGAATGTGAATCAATCCATTTAAGAATG  200
      ||||||| ||||| ||| ||| ||||||  |||  |||||||      | 
seq2  CAACTGGCTGTTAGCATATAGAAGAATGCAAATTGATCCATT----CTTA  196

seq1  GATCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAA  250
        ||||| ||| ||| |||| |||||||||||||| || || ||||||||
seq2  TCTCCTTCTACAAAGCTCAAGTCTAAGTGGATCAAAGACCTCCACATAAA  246

seq1  ACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAG  300
      ||||        ||||||||| ||||||||||| ||||||||||| ||||
seq2  ACCA--------GAAACTTATGGAGGAGAAAGT-GGGAAAAGCCTCGAAG  287

seq1  ATATGGGCACAG-GGGAAAAATTCCT-----GAATAGAACAGCAATGGCT  344
      |||||||||||| |||||||| ||||     ||| |||||||||||| ||
seq2  ATATGGGCACAGAGGGAAAAAATCCTGAACAGAAGAGAACAGCAATGCCT  337

seq1  TGCGCTGTAAGATCGAGAAT  364
      || ||||||||||| |||||
seq2  TGTGCTGTAAGATCAAGAAT  357