BAC Information

Click to search

BAC

Clone NameB6Ng01-068C16
Chromosome6 (Build37)
Map Location 148,504,065 - 148,629,093
singlet/doubletdoublet
Overlap geneEG622319, LOC100042984
Upstream geneCcdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
Downstream geneLOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068C16.bB6Ng01-068C16.g
ACCDH886834DH886835
length1,0051,100
definitionDH886834|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C16, 5' end.DH886835|Mus musculus domesticus DNA, BAC clone: B6Ng01-068C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,628,080 - 148,629,093)(148,504,065 - 148,505,172)
sequence
gaattccacacgcaggcatgaaattctcgtttctggtgttttctgtctgt
gctcagtgccttacaggaatagaatatatgtaggcacatcattgcagaat
tagaagaaagtttacatttattggcaggaaagcagaaaaagtagcttcaa
caacctggaagaccaaatttaatataattagtttaggtttttgtttttaa
tatttgcttgctatgttctttgatgaaagctaaagtgttgggtcactttt
caacagtttaatttctctccccctccctttctccccctctccctctccct
ctccctctccctttctctctctttctttctctgtatgtgtgtgtatgtgt
gtgtgcatgcacgcatgtctgtgtgcaggaaaagttcagtattaggttcc
tcctcccgccccttttcttgacatagggtctctcactgatttggcaagac
tgaacatccagcaagctcccaaactcatggcctcccaatgtgacagacac
atccccccatatccagctctgtatgtgggtgctggggttctgaacccagg
ttctcatgtttgcacagcaagcttttaacctactgagccatctctccaac
cctaaacagttcagtttttaatttttgctttagagatttcatgggcattt
atagctgctgtgtaaaatatatctgaaacaatctagttgaagttattttc
tttgctttgaattggaaattgcattcagaaaaacaacaggcaacctgata
cgcatttgtgaaaacactcaacatacctgaacttaaaaggagccagtctg
gctaagactctgggatagtcctgggttttctgtttttgtttttgtttgtt
tgtttgtttgtttcagttaggttgtcagtgttgtcttctggacaagaaat
caattcagatgttagttgagatctagtgggggaattaacagatgatgatt
tatttatgtgtttgccaatgctttttttttgttttgttttttttttttat
ttgcc
gaattcactaatatgtgtcatctgatatcctttaaatgctgagcagcaaa
ggagaagggtgggaaatatcagacatggagggttctgttgtgacctgcta
tggagtgaccctctctacctagaagcctgagaaatcactgatggaagtta
tgcatagatcagcagggaatgggccaaagctgagccctgctaatagtcac
taaccaccctctctttagggcctggggagacccagggctctgtagggctg
agtgagcacagtgagcagtgtttctgaaagtcacatcgcttcatggcttg
aggcacccataggaaagggaggggaccatttcccagtgtgagctgtgagc
tgtggaatctactgctctctctttccagaacacccgcctacaaaggcgga
gagctgatctgtactttcctttatttttaaaatattaaattagagactgt
aacaaaatacccacactctgtgagaacaattttgaaaacagaaatagtca
tgatgtttctttggtgtcaaattctacctttgttgtgtttccctcctcct
tcttttccaattagccaagttggatttaaatatttatgatgctgcttctt
aagattgcacacacatctgccaagaagaaagttagaaaatgaggcgaaaa
tatgccactgagctctgtctgcatttccaagggtacgagggactggagga
gagcccagctctgaaactagggatcaaaaaattggctaaacatttttatg
gcttatttgacaaaactgtctaaaaaattatagcttattttatccaacta
cattcagacagaatttaaacacaatgtgagagcccagaaagaaagcattt
tccaaaataaacacagagcattcatggctgagaaaagaggccagctaatg
ctaggaagagagagacatgagacccaacaagctaatgacagagctggctg
caggattctgtttctgctgatggggtttttgtttatattgtgaagcagta
cctagaatattttaaaaggtgcggagctactcagcagctgtgaagtcagg
ggtttgacatcacagatgccatggcggggatggttctgcatttctggctt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_148628080_148629093
seq2: B6Ng01-068C16.b_43_1047 (reverse)

seq1  GGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACAATAGGCAAA  50
      |||||| |||||||||||| |||| ||||||||     |  || ||||||
seq2  GGCAAATAAAAAAAAAAAACAAAACAAAAAAAA-----AGCATTGGCAAA  45

seq1  CACATAAATAAATCAATCATCTGTTTATTTCCCCCACTAGATCTCAACTA  100
      |||||||||||||| |||||||| ||| ||||||||||||||||||||||
seq2  CACATAAATAAATC-ATCATCTG-TTAATTCCCCCACTAGATCTCAACTA  93

seq1  ACATCTGAATTGAATGTCTTGTCCAGAAGACAACACTGACAACCTAACTG  150
      |||||||||||| || ||||||||||||||||||||||||||||||||||
seq2  ACATCTGAATTG-ATTTCTTGTCCAGAAGACAACACTGACAACCTAACTG  142

seq1  AAAACAAACAAACAAACAAACAAAAACAAAAACAGAAAACCCAGGACTAT  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACAAACAAACAAACAAACAAAAACAAAAACAGAAAACCCAGGACTAT  191

seq1  CCCAGAGTCTTAGCCAGACTGGCTCCTTTTAAGTTCAGGTATGTTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGTCTTAGCCAGACTGGCTCCTTTTAAGTTCAGGTATGTTGAGTG  241

seq1  TTTTCACAAATGCGTATCAGGTTGCCTGTTGTTTTTCTGAATGCAATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACAAATGCGTATCAGGTTGCCTGTTGTTTTTCTGAATGCAATTTC  291

seq1  CAATTCAAAGCAAAGAAAATAACTTCAACTAGATTGTTTCAGATATATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAAAGCAAAGAAAATAACTTCAACTAGATTGTTTCAGATATATTT  341

seq1  TACACAGCAGCTATAAATGCCCATGAAATCTCTAAAGCAAAAATTAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCAGCTATAAATGCCCATGAAATCTCTAAAGCAAAAATTAAAAA  391

seq1  CTGAACTGTTTAGGGTTGGAGAGATGGCTCAGTAGGTTAAAAGCTTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTGTTTAGGGTTGGAGAGATGGCTCAGTAGGTTAAAAGCTTGCTG  441

seq1  TGCAAACATGAGAACCTGGGTTCAGAACCCCAGCACCCACATACAGAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACATGAGAACCTGGGTTCAGAACCCCAGCACCCACATACAGAGCT  491

seq1  GGATATGGGGGGATGTGTCTGTCACATTGGGAGGCCATGAGTTTGGGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGGGGGGATGTGTCTGTCACATTGGGAGGCCATGAGTTTGGGAGC  541

seq1  TTGCTGGATGTTCAGTCTTGCCAAATCAGTGAGAGACCCTATGTCAAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGATGTTCAGTCTTGCCAAATCAGTGAGAGACCCTATGTCAAGAA  591

seq1  AAGGGGCGGGAGGAGGAACCTAATACTGAACTTTTCCTGCACACAGACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCGGGAGGAGGAACCTAATACTGAACTTTTCCTGCACACAGACAT  641

seq1  GCGTGCATGCACACACACATACACACACATACAGAGAAAGAAAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCATGCACACACACATACACACACATACAGAGAAAGAAAGAGAGAG  691

seq1  AAAGGGAGAGGGAGAGGGAGAGGGAGAGGGGGAGAAAGGGAGGGGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGGGAGAGGGAGAGGGAGAGGGGGAGAAAGGGAGGGGGAGAG  741

seq1  AAATTAAACTGTTGAAAAGTGACCCAACACTTTAGCTTTCATCAAAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAACTGTTGAAAAGTGACCCAACACTTTAGCTTTCATCAAAGAAC  791

seq1  ATAGCAAGCAAATATTAAAAACAAAAACCTAAACTAATTATATTAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAGCAAATATTAAAAACAAAAACCTAAACTAATTATATTAAATTT  841

seq1  GGTCTTCCAGGTTGTTGAAGCTACTTTTTCTGCTTTCCTGCCAATAAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCAGGTTGTTGAAGCTACTTTTTCTGCTTTCCTGCCAATAAATG  891

seq1  TAAACTTTCTTCTAATTCTGCAATGATGTGCCTACATATATTCTATTCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTTCTTCTAATTCTGCAATGATGTGCCTACATATATTCTATTCCT  941

seq1  GTAAGGCACTGAGCACAGACAGAAAACACCAGAAACGAGAATTTCATGCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGCACTGAGCACAGACAGAAAACACCAGAAACGAGAATTTCATGCC  991

seq1  TGCGTGTGGAATTC  1014
      ||||||||||||||
seq2  TGCGTGTGGAATTC  1005

seq1: chr6_148504065_148505172
seq2: B6Ng01-068C16.g_67_1166

seq1  GAATTCACTAATATGTGTCATCTGATATCCTTTAAATGCTGAGCAGCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATATGTGTCATCTGATATCCTTTAAATGCTGAGCAGCAAA  50

seq1  GGAGAAGGGTGGGAAATATCAGACATGGAGGGTTCTGTTGTGACCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGGTGGGAAATATCAGACATGGAGGGTTCTGTTGTGACCTGCTA  100

seq1  TGGAGTGACCCTCTCTACCTAGAAGCCTGAGAAATCACTGATGGAAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGACCCTCTCTACCTAGAAGCCTGAGAAATCACTGATGGAAGTTA  150

seq1  TGCATAGATCAGCAGGGAATGGGCCAAAGCTGAGCCCTGCTAATAGTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAGATCAGCAGGGAATGGGCCAAAGCTGAGCCCTGCTAATAGTCAC  200

seq1  TAACCACCCTCTCTTTAGGGCCTGGGGAGACCCAGGGCTCTGTAGGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACCCTCTCTTTAGGGCCTGGGGAGACCCAGGGCTCTGTAGGGCTG  250

seq1  AGTGAGCACAGTGAGCAGTGTTTCTGAAAGTCACATCGCTTCATGGCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCACAGTGAGCAGTGTTTCTGAAAGTCACATCGCTTCATGGCTTG  300

seq1  AGGCACCCATAGGAAAGGGAGGGGACCATTTCCCAGTGTGAGCTGTGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACCCATAGGAAAGGGAGGGGACCATTTCCCAGTGTGAGCTGTGAGC  350

seq1  TGTGGAATCTACTGCTCTCTCTTTCCAGAACACCCGCCTACAAAGGCGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATCTACTGCTCTCTCTTTCCAGAACACCCGCCTACAAAGGCGGA  400

seq1  GAGCTGATCTGTACTTTCCTTTATTTTTAAAATATTAAATTAGAGACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATCTGTACTTTCCTTTATTTTTAAAATATTAAATTAGAGACTGT  450

seq1  AACAAAATACCCACACTCTGTGAGAACAATTTTGAAAACAGAAATAGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATACCCACACTCTGTGAGAACAATTTTGAAAACAGAAATAGTCA  500

seq1  TGATGTTTCTTTGGTGTCAAATTCTACCTTTGTTGTGTTTCCCTCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTTCTTTGGTGTCAAATTCTACCTTTGTTGTGTTTCCCTCCTCCT  550

seq1  TCTTTTCCAATTAGCCAAGTTGGATTTAAATATTTATGATGCTGCTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAATTAGCCAAGTTGGATTTAAATATTTATGATGCTGCTTCTT  600

seq1  AAGATTGCACACACATCTGCCAAGAAGAAAGTTAGAAAATGAGGCGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGCACACACATCTGCCAAGAAGAAAGTTAGAAAATGAGGCGAAAA  650

seq1  TATGCCACTGAGCTCTGTCTGCATTTCCAAGGGTACGAGGGACTGGAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCACTGAGCTCTGTCTGCATTTCCAAGGGTACGAGGGACTGGAGGA  700

seq1  GAGCCCAGCTCTGAAACTAGGGATCAAAAAATTGGCTAAACATTTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCAGCTCTGAAACTAGGGATCAAAAAATTGGCTAAACATTTTTATG  750

seq1  GCTTATTTGACAAAACTGTCTAAAAAATTATAGCTTATTTTATCCAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTTGACAAAACTGTCTAAAAAATTATAGCTTATTTTATCCAACTA  800

seq1  CATTCAGACAGAATTTAAACACAATGTGAGAGCCCAGAAAGAAAGCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGACAGAATTTAAACACAATGTGAGAGCCCAGAAAGAAAGCATTT  850

seq1  TCCAAAATAAACACAGAGCATTCATGGCTGAGAAAAGAGGCCAGCTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAATAAACACAGAGCATTCATGGCTGAGAAAAGAGGCCAGCTAATG  900

seq1  CTAGGAAGAGAAGAGACATGAGACCCAACAAGCTAATGACAGAGCTGGCT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGAG-AGAGACATGAGACCCAACAAGCTAATGACAGAGCTGGCT  949

seq1  GCAGGATTTCTGTCTCTGCTGATGGGGTTTTTGTTCTATATTGTGAAGCA  1000
      |||||| |||||| ||||||||||||||||||||| ||||||||||||||
seq2  GCAGGA-TTCTGTTTCTGCTGATGGGGTTTTTGTT-TATATTGTGAAGCA  997

seq1  GTACCTAGATATTTTTAAAAGGTGCGGAGCCTACCTCAGCAGCCTGTGGA  1050
      |||||||||   ||||||||||||||||| ||| |||||||| |||| ||
seq2  GTACCTAGAATATTTTAAAAGGTGCGGAG-CTA-CTCAGCAG-CTGT-GA  1043

seq1  AGTCAGGGGTTTGACAGTCACAGATGCCATGGCGGGGATTGTTCTGCATT  1100
      |||||||||||||||| |||||||||||||||||||||| ||||||||||
seq2  AGTCAGGGGTTTGACA-TCACAGATGCCATGGCGGGGATGGTTCTGCATT  1092

seq1  TCTGGCTT  1108
      ||||||||
seq2  TCTGGCTT  1100