BAC Information

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BAC

Clone NameB6Ng01-068L17
Chromosome6 (Build37)
Map Location 6,255,037 - 6,359,772
singlet/doubletdoublet
Overlap geneEG667468, LOC667471
Upstream geneAsb4, Pdk4, Dync1i1, Slc25a13, EG667462
Downstream geneLOC100040096, Shfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068L17.bB6Ng01-068L17.g
ACCDH887232DH887233
length7251,139
definitionDH887232|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L17, 5' end.DH887233|Mus musculus domesticus DNA, BAC clone: B6Ng01-068L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,359,048 - 6,359,772)(6,255,037 - 6,256,203)
sequence
gaattctgtcaaatcagagactttcacattcagcagagcatcggcagaag
acatcatgatggagttttcccactgagaaagtctccatcaggagtttctg
gcttcccagttccctctctaggcactcttataccatgggataaagagtag
taacatctattctaactgctcacaagatgtggtactgctaaataccttta
gttgattactttttcccctcttcagagagctgttggagtaggtgtggcct
ttttggagtaggtgtgtcactgtggtctttaagaccctcatcctagcttc
ctggaagggagtattctgctagcagttttcagatgaaaatatagaactct
cagctcttcctgtaccatgcctgcctagatgctacaatgctccctccttt
atgataatggactgaacctctgaacctgtaagccagccccaattaaatgt
cctttataagacttgccttggtcatggtgtctgttcatagcagtaaaacc
ctaactaagacaccatccaaatgttgtaaattgtaagcattttatgtcat
tattgaaatactaactttcccagattatataattacacagaaagttattc
aattaccccaaacacctagaaaatttagttgtagggatattttggcatgt
gtatatgagtgtacacatgtctgttgataaagatacatgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg

gaattcatatcagtttccacattggtccatagacacccttagggaaagcc
ctgtttaatccagggtgtcccggacagttagggactttatatctgctttt
ggatttagcatagagttgtattgctactggtgttctgagaacagggggac
tgctagatctgtgccctctatctgtcccaaactgttagtaggatttctgc
ttcagtctataagtcaggtccagagtgagtcttagccctcttctccatga
taaattccctaaatctggtactattcattacttctctaaacctctatata
aacccttcaatatagaatctcattgatgccacagaaatctcattattgtc
agatactttataggaagcatcttggttagaacccaaacagaacccaaagg
aagcaaaaaggaagagcccactagactatgtcacatggtttaatacaagc
ccctggagcaatagccaccagtgtggtgtttctttaacattcatttgttt
attcatccatccacccatccgtctgtctgtctgtctgcctgaccatccat
ccgttcatctatccatccgtccagcattcttttagccatattctgagacg
tccagctgcctgctgtaggaagcaggcccgcaggcattctgtccaactgg
tctttgcaatcttaccttgtccatttctgcaattcagtggagaccaatat
ataaccaaccctttcacacaaaatggcctgccagaagcccaagggtgagc
tgattttcaaaggtctcccacccttaaatgaacctcctttggtgctttca
tggattctgttgttggagccacaaggacccttaagaaaaaaatccttgga
ggcagctggtccccgctgtcattgaaactcagaggagggaacgccatggg
tgagaaactgctgcctggatgtcatgaggttgcttgtatttcaaagaatt
cagctaccacctttgtggcttttagctctctaataagcagttttaaaagc
taaaacgtaatttgcctttaaatctgctgttcttgcttagtctaatgggg
tgttagcaatgccggcagcataaagctctttagtcaatcaactgaaatgg
gttgcttgggctgaaatatttgaaaactggggtgggcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_6359048_6359772
seq2: B6Ng01-068L17.b_48_772 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACATGTATCTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACATGTATCTTTATC  50

seq1  AACAGACATGTGTACACTCATATACACATGCCAAAATATCCCTACAACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATGTGTACACTCATATACACATGCCAAAATATCCCTACAACTA  100

seq1  AATTTTCTAGGTGTTTGGGGTAATTGAATAACTTTCTGTGTAATTATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTAGGTGTTTGGGGTAATTGAATAACTTTCTGTGTAATTATATA  150

seq1  ATCTGGGAAAGTTAGTATTTCAATAATGACATAAAATGCTTACAATTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAAGTTAGTATTTCAATAATGACATAAAATGCTTACAATTTAC  200

seq1  AACATTTGGATGGTGTCTTAGTTAGGGTTTTACTGCTATGAACAGACACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGGATGGTGTCTTAGTTAGGGTTTTACTGCTATGAACAGACACC  250

seq1  ATGACCAAGGCAAGTCTTATAAAGGACATTTAATTGGGGCTGGCTTACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAAGGCAAGTCTTATAAAGGACATTTAATTGGGGCTGGCTTACAG  300

seq1  GTTCAGAGGTTCAGTCCATTATCATAAAGGAGGGAGCATTGTAGCATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAGGTTCAGTCCATTATCATAAAGGAGGGAGCATTGTAGCATCTA  350

seq1  GGCAGGCATGGTACAGGAAGAGCTGAGAGTTCTATATTTTCATCTGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCATGGTACAGGAAGAGCTGAGAGTTCTATATTTTCATCTGAAAA  400

seq1  CTGCTAGCAGAATACTCCCTTCCAGGAAGCTAGGATGAGGGTCTTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGCAGAATACTCCCTTCCAGGAAGCTAGGATGAGGGTCTTAAAGA  450

seq1  CCACAGTGACACACCTACTCCAAAAAGGCCACACCTACTCCAACAGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGTGACACACCTACTCCAAAAAGGCCACACCTACTCCAACAGCTCT  500

seq1  CTGAAGAGGGGAAAAAGTAATCAACTAAAGGTATTTAGCAGTACCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGGGGAAAAAGTAATCAACTAAAGGTATTTAGCAGTACCACATC  550

seq1  TTGTGAGCAGTTAGAATAGATGTTACTACTCTTTATCCCATGGTATAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGCAGTTAGAATAGATGTTACTACTCTTTATCCCATGGTATAAGA  600

seq1  GTGCCTAGAGAGGGAACTGGGAAGCCAGAAACTCCTGATGGAGACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGAGAGGGAACTGGGAAGCCAGAAACTCCTGATGGAGACTTTCT  650

seq1  CAGTGGGAAAACTCCATCATGATGTCTTCTGCCGATGCTCTGCTGAATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGAAAACTCCATCATGATGTCTTCTGCCGATGCTCTGCTGAATGT  700

seq1  GAAAGTCTCTGATTTGACAGAATTC  725
      |||||||||||||||||||||||||
seq2  GAAAGTCTCTGATTTGACAGAATTC  725


seq1: chr6_6255037_6256203
seq2: B6Ng01-068L17.g_68_1206

seq1  GAATTCATATCAGTTTCCACATTGGTCCATAGACACCCTTAGGGAAAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATCAGTTTCCACATTGGTCCATAGACACCCTTAGGGAAAGCC  50

seq1  CTGTTTAATCCAGGGTGTCCCGGACAGTTAGGGACTTTATATCTGCTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAATCCAGGGTGTCCCGGACAGTTAGGGACTTTATATCTGCTTTT  100

seq1  GGATTTAGCATAGAGTTGTATTGCTACTGGTGTTCTGAGAACAGGGGGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTAGCATAGAGTTGTATTGCTACTGGTGTTCTGAGAACAGGGGGAC  150

seq1  TGCTAGATCTGTGCCCTCTATCTGTCCCAAACTGTTAGTAGGATTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGATCTGTGCCCTCTATCTGTCCCAAACTGTTAGTAGGATTTCTGC  200

seq1  TTCAGTCTATAAGTCAGGTCCAGAGTGAGTCTTAGCCCTCTTCTCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCTATAAGTCAGGTCCAGAGTGAGTCTTAGCCCTCTTCTCCATGA  250

seq1  TAAATTCCCTAAATCTGGTACTATTCATTACTTCTCTAAACCTCTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCCTAAATCTGGTACTATTCATTACTTCTCTAAACCTCTATATA  300

seq1  AACCCTTCAATATAGAATCTCATTGATGCCACAGAAATCTCATTATTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTCAATATAGAATCTCATTGATGCCACAGAAATCTCATTATTGTC  350

seq1  AGATACTTTATAGGAAGCATCTTGGTTAGAACCCAAACAGAACCCAAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTTATAGGAAGCATCTTGGTTAGAACCCAAACAGAACCCAAAGG  400

seq1  AAGCAAAAAGGAAGAGCCCACTAGACTATGTCACATGGTTTAATACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAGGAAGAGCCCACTAGACTATGTCACATGGTTTAATACAAGC  450

seq1  CCCTGGAGCAATAGCCACCAGTGTGGTGTTTCTTTAACATTCATTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCAATAGCCACCAGTGTGGTGTTTCTTTAACATTCATTTGTTT  500

seq1  ATTCATCCATCCACCCATCCGTCTGTCTGTCTGTCTGCCTGACCATCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCATCCACCCATCCGTCTGTCTGTCTGTCTGCCTGACCATCCAT  550

seq1  CCGTTCATCTATCCATCCGTCCAGCATTCTTTTAGCCATATTCTGAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCATCTATCCATCCGTCCAGCATTCTTTTAGCCATATTCTGAGACG  600

seq1  TCCAGCTGCCTGCTGTAGGAAGCAGGCCCGCAGGCATTCTGTCCAACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGCCTGCTGTAGGAAGCAGGCCCGCAGGCATTCTGTCCAACTGG  650

seq1  TCTTTGCAATCTTACCTTGTCCATTTCTGCAATTCAGTGGAGACCAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCAATCTTACCTTGTCCATTTCTGCAATTCAGTGGAGACCAATAT  700

seq1  ATAACCAACCCTTTCACACAAAATGGCCTGCCAGAAGCCCAAGGGTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAACCCTTTCACACAAAATGGCCTGCCAGAAGCCCAAGGGTGAGC  750

seq1  TGATTTTCAAAGGTCTCCCACCCTTAAATGAACCTCCTTTGGTGCTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTCAAAGGTCTCCCACCCTTAAATGAACCTCCTTTGGTGCTTTCA  800

seq1  TGGATTCTGTTGTTGGAGCCACAAGGACCCTTAAGAAAAAAATCCTTGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGTTGTTGGAGCCACAAGGACCCTTAAGAAAAAAATCCTTGGA  850

seq1  GGCAGCTGGTCCCCGCTGTCATTGAAACCCAGAGGAGGGAACGCCATGGG  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCAGCTGGTCCCCGCTGTCATTGAAACTCAGAGGAGGGAACGCCATGGG  900

seq1  TGAGAAACTGCTGCCTGGATGTCATGAGGTTGCTTGTATTTCAAAAGAAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGAGAAACTGCTGCCTGGATGTCATGAGGTTGCTTGTATTTC-AAAGAAT  949

seq1  TCAGCTTACCACCTCTGTGGCTTTTAGCCTCTCTAATAAAGCAGTTTTTA  1000
      ||||| |||||||| |||||||||||| ||||||||| ||||||||||  
seq2  TCAGC-TACCACCTTTGTGGCTTTTAG-CTCTCTAAT-AAGCAGTTTT--  994

seq1  AAAAGCTAAAAACGTAATCTGCCTTTTAAATCTGCTGTTCCTGCTGAGTC  1050
      ||||||| |||||||||| |||| |||||||||||||||| |||| ||||
seq2  AAAAGCT-AAAACGTAATTTGCC-TTTAAATCTGCTGTTCTTGCTTAGTC  1042

seq1  TAAATGGGGTTGTAGCAAAATGCCCGGCCAGCATTAGAGCTCCCTGAAGT  1100
      | ||||||||  ||||  ||||||  | ||||| || ||||  ||  |||
seq2  T-AATGGGGTGTTAGC--AATGCC--GGCAGCA-TAAAGCT--CTTTAGT  1084

seq1  CAATCAACTGAAATGGGGTTGCTTGGGGGCCTGAAATATATTTGAAAACA  1150
      |||||||||||||| ||||||||||||   |||||  |||||||||||| 
seq2  CAATCAACTGAAAT-GGGTTGCTTGGG---CTGAA--ATATTTGAAAAC-  1127

seq1  CTCTGGGGGTGGCGCAA  1167
           ||||||| ||||
seq2  ----TGGGGTGG-GCAA  1139


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