BAC Information

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BAC

Clone NameB6Ng01-070M06
Chromosome17 (Build37)6 (Build37)
Map Location 50,597,044 - 50,598,184130,786,470 - 130,787,653
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDaam2, Kif6, EG668470, Rftn1, EG668475, EG628747, LOC100043818, Dazl
Downstream genePlcl2, EG654432, Tbc1d5, LOC100043451
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070M06.bB6Ng01-070M06.g
ACCDH888662DH888663
length1,136797
definitionDH888662|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M06, 5' end.DH888663|Mus musculus domesticus DNA, BAC clone: B6Ng01-070M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,597,044 - 50,598,184)(130,786,470 - 130,787,653)
sequence
gaattcaatttaaagacatcactaacaaaataccagatagtgttatagtt
agcctttctagccatatgtaggaagtagttctatttctaatgggctttaa
tatgagaaatcccacaggcaagaggaaaatgtgtttgcattgactcttcc
acagccatctccagtcatacagaaaattctcttcctctagggctttgatg
ttctgtgagagatttaccaaaatgttaaggatgctttctctacacggtgg
catcatgggtaacgaatgcttctttgtattttctcagctttctgcatcta
gcataaagaccagttgcatttataaaaaaacaaaacaaaacaaaacaaaa
caataacaaaaaacactttctgaaaaatctttttaaaattaaaaaaaaag
tatttgttgttctaattcttttttataggtgtacagtttcctctttatgt
tttatagtctcttcagacctgacagctcagtcaggaaaaggaaaagacaa
agaccagtggtcccagagaaataagaggcgggactccctttccactgggg
cccaggagtcaggtgaatcttgtggcagcatctctgatcacatacattac
aactgaaaaaatattccagcaaaagttggcaatactgaaggccttactca
acctagtgctggtgtggcagggcaggggagactaaaccaaccaggtgctg
ctctgataagagacgagaagctatccagtcaatcctctgggtgtagatcc
tgaggacttaaagaagcctgcgcagtctgagtgctaagtctctggggctg
cttccccggcagcactgagagccagcacaggcagccaggggaaagtggtg
aggagcctactgaggagactgaggccaggcacaagactggtcctctacag
gaagcactcagcttttgtcaaagtggttgtgtaagcagcagaggcctgct
ctcgtttgctgagactctcctacgtcgttctgtcatgaagtggctaaaag
caggaggctcaaacagcccagtcttactagatctgaagctacagtttcat
gtacagagaagcttatttttcctacctagctgtgtagcagccaccagcgg
gtgggtagcaatagagagaaagtggggtgatactct
gaattctctctctctctctctctctctctctctctctctctctctctctc
agaatactagtaataactatgctaatacaaacatgttgcattatgtttat
attttaatatgggacattattagtatttatgagatatattctctttgaag
attattgtgttcgtagactttgaatttttttaaatagtaatttttaatct
cttatccctccttgttacaattatcaataaatacattagaattgtctatt
attattggtgagtttagtgttcattttatgctgggctgatttcattcata
tcttccagttcctgattgataatgccaacagaaacatgttgacaaattct
acgaaaatagttttgaagagagtatgtgttgagcagagaaaaccatgagg
tttcctgagtatatatgtgtgtgtgttttatgcataaaatcatctgaatt
acaaggaacatagtttctgttccagggcaaaattctaagtggacccaatg
ggtggggaagagattgaagctttaagattacatatcctcctctggtcaaa
atgttgatgttcatagtgcattcttcatattgtccacaacagaattctca
ctcttaatttttttttttcaaatcacaggaggtcacaacatatgaaaggg
aaaaggccctcttttatttattacaattgccaatatatttagtacttgaa
tcttgtttggcactttggatttcaagcaaacagtacaaggatatttaggg
catttgaattacagtgtgtgtgtgtgtgtgtgtgtgggtgggggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_50597044_50598184
seq2: B6Ng01-070M06.b_40_1175

seq1  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTAAAGACATCACTAACAAAATACCAGATAGTGTTATAGTT  50

seq1  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCTAGCCATATGTAGGAAGTAGTTCTATTTCTAATGGGCTTTAA  100

seq1  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGAAATCCCACAGGCAAGAGGAAAATGTGTTTGCATTGACTCTTCC  150

seq1  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCATCTCCAGTCATACAGAAAATTCTCTTCCTCTAGGGCTTTGATG  200

seq1  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGAGAGATTTACCAAAATGTTAAGGATGCTTTCTCTACACGGTGG  250

seq1  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGGTAACGAATGCTTCTTTGTATTTTCTCAGCTTTCTGCATCTA  300

seq1  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAGACCAGTTGCATTTATAAAAAAACAAAACAAAACAAAACAAAA  350

seq1  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACAAAAAACACTTTCTGAAAAATCTTTTTAAAATTAAAAAAAAAG  400

seq1  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGTTCTAATTCTTTTTTATAGGTGTACAGTTTCCTCTTTATGT  450

seq1  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCTCTTCAGACCTGACAGCTCAGTCAGGAAAAGGAAAAGACAA  500

seq1  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTGGTCCCAGAGAAATAAGAGGCGGGACTCCCTTTCCACTGGGG  550

seq1  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGAGTCAGGTGAATCTTGTGGCAGCATCTCTGATCACATACATTAC  600

seq1  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAAAATATTCCAGCAAAAGTTGGCAATACTGAAGGCCTTACTCA  650

seq1  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGCTGGTGTGGCAGGGCAGGGGAGACTAAACCAACCAGGTGCTG  700

seq1  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAAGAGACGAGAAGCTATCCAGTCAATCCTCTGGGTGTAGATCC  750

seq1  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCTGGGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACTTAAAGAAGCCTGCGCAGTCTGAGTGCTAAGTCTCTGGGGCTG  800

seq1  CTTCCCCGGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAGGTGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCCCCGGCAGCACTGAGAGCCAGCACAGGCAGCCAGGGGAAAGTGGTG  850

seq1  AGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTACTGAGGAGACTGAGGCCAGGCACAAGACTGGTCCTCTACAG  900

seq1  GAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCACTCAGCTTTTGTCAAAGTGGTTGTGTAAGCAGCAGAGGCCTGCT  950

seq1  CTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGGCTAAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTGCTGAGACTCTCCTACGTCGTTCTGTCATGAAGTGGCTAAAAG  1000

seq1  CAGGAGGCTCAAAACAGCCCAGTCCTTACTTGGATCTGAAGGCTACAGTT  1050
      |||||||||| |||||||||||| ||||| | |||||||| |||||||||
seq2  CAGGAGGCTC-AAACAGCCCAGT-CTTAC-TAGATCTGAA-GCTACAGTT  1046

seq1  TCATGTTCAGAGAAG-TTA-TTTTCCCACCTAGCTGTGTAGCAG-CAGCA  1097
      |||||| |||||||| ||| |||||| ||||||||||||||||| || ||
seq2  TCATGTACAGAGAAGCTTATTTTTCCTACCTAGCTGTGTAGCAGCCACCA  1096

seq1  GCGGTGGGGTAGGGCAAATAGAGAGATAGGGGGTGGGGTACTCT  1141
      ||||  ||||||    |||||||||| || ||| | | ||||||
seq2  GCGGGTGGGTAG---CAATAGAGAGAAAGTGGG-GTGATACTCT  1136

seq1: chr6_130786470_130787653
seq2: B6Ng01-070M06.g_115_862 (reverse)

seq1  ACTCCCCCACCCCCGATCTCGTGTCTCTAGCTGCATATGAATCAGAGGAT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GGCCTAGTTGGCCATCAGTGGGAAGAGAGGCCCATTGGTCGTGCAAACTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  TATATTCTTTATATGGGGAATGCCAGGGCCAAGTAGAGGGAGTGTGTGGG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TAGGGGAGTGGGTGGGGGAGCATGTGGGGAACTTTTGGGATAGCATTGGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AATGTAAATGAAATAAATACCCAATTTAAAAAATGCTGCAGGGAAAAGGG  250
                                                        
seq2  --------------------------------------------------  0

seq1  TAAATACATTCAAGTTTGCAAGATTGAAAACTAGCAAATCAACTATGGAA  300
                                                        
seq2  --------------------------------------------------  0

seq1  ATCTATGTGAAGAATTCTCAGAAGGTAACACATGACACACATGTGTACCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CTCATTGGTGTATGTACAAAGGACTCGCTTTTCTACTCCATAGATGCTTG  400
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTGCCCTGATAATCACTGCTCTATTCACACACACACACACACACACAC  450
                                          || | | ||| |||
seq2  ------------------------------------ACTCCCCCACCCAC  14

seq1  ACACACACACACACACACACTGTAATTCAAATGCCCTAAATATCCTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACTGTAATTCAAATGCCCTAAATATCCTTGTA  64

seq1  CTGTTTGCTTGAAATCCAAAGTGCCAAACAAGATTCAAGTACTAAATATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCTTGAAATCCAAAGTGCCAAACAAGATTCAAGTACTAAATATA  114

seq1  TTGGCAATTGTAATAAATAAAAGAGGGCCTTTTCCCTTTCATATGTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAATTGTAATAAATAAAAGAGGGCCTTTTCCCTTTCATATGTTGTG  164

seq1  ACCTCCTGTGATTTGAAAAAAAAAAATTAAGAGTGAGAATTCTGTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTGTGATTTGAAAAAAAAAAATTAAGAGTGAGAATTCTGTTGTGG  214

seq1  ACAATATGAAGAATGCACTATGAACATCAACATTTTGACCAGAGGAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGAAGAATGCACTATGAACATCAACATTTTGACCAGAGGAGGAT  264

seq1  ATGTAATCTTAAAGCTTCAATCTCTTCCCCACCCATTGGGTCCACTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATCTTAAAGCTTCAATCTCTTCCCCACCCATTGGGTCCACTTAGA  314

seq1  ATTTTGCCCTGGAACAGAAACTATGTTCCTTGTAATTCAGATGATTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCCTGGAACAGAAACTATGTTCCTTGTAATTCAGATGATTTTAT  364

seq1  GCATAAAACACACACACATATATACTCAGGAAACCTCATGGTTTTCTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAAACACACACACATATATACTCAGGAAACCTCATGGTTTTCTCTG  414

seq1  CTCAACACATACTCTCTTCAAAACTATTTTCGTAGAATTTGTCAACATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACATACTCTCTTCAAAACTATTTTCGTAGAATTTGTCAACATGT  464

seq1  TTCTGTTGGCATTATCAATCAGGAACTGGAAGATATGAATGAAATCAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGGCATTATCAATCAGGAACTGGAAGATATGAATGAAATCAGCC  514

seq1  CAGCATAAAATGAACACTAAACTCACCAATAATAATAGACAATTCTAATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAAATGAACACTAAACTCACCAATAATAATAGACAATTCTAATG  564

seq1  TATTTATTGATAATTGTAACAAGGAGGGATAAGAGATTAAAAATTACTAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGATAATTGTAACAAGGAGGGATAAGAGATTAAAAATTACTAT  614

seq1  TTAAAAAAATTCAAAGTCTACGAACACAATAATCTTCAAAGAGAATATAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAATTCAAAGTCTACGAACACAATAATCTTCAAAGAGAATATAT  664

seq1  CTCATAAATACTAATAATGTCCCATATTAAAATATAAACATAATGCAACA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAAATACTAATAATGTCCCATATTAAAATATAAACATAATGCAACA  714

seq1  TGTTTGTATTAGCATAGTTATTACTAGTATTCTG  1184
      ||||||||||||||||||||||||||||||||||
seq2  TGTTTGTATTAGCATAGTTATTACTAGTATTCTG  748