BAC Information

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BAC

Clone NameB6Ng01-070N10
Chromosome6 (Build37)
Map Location 84,754,366 - 84,860,609
singlet/doubletdoublet
Overlap geneExoc6b, LOC665129
Upstream genePaip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114, 4930504D19Rik, Cyp26b1
Downstream geneNpm3-ps1, EG545861, EG623016, Spr, LOC665086, LOC665089, Emx1, Sfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070N10.bB6Ng01-070N10.g
ACCDH888712DH888713
length4551,174
definitionDH888712|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N10, 5' end.DH888713|Mus musculus domesticus DNA, BAC clone: B6Ng01-070N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,860,149 - 84,860,609)(84,754,366 - 84,755,552)
sequence
cttaatctcatttagattcagtgacacttattttctcatgaactaatttc
agcttggcatggaagagaaatatattgatttataagaagtcatgagcttc
aaatcttgcaccttggcatggtacagaaagcctaggttttatggagaaat
gtttctggaatactatgggcttaaacagattacgcaagttgttgttgtta
ttgttgtttcttcttttcctcctccttctcctcttcctcctcctcttctt
cttcctcctcctctccctccttctcctttcttcttcctcctcctctccct
ccttctccttctcctcctcctctccctcctcttcctcctcctcttccttt
ctttctctccctctgcctctcttccttcttccttacctccctccctctct
ctctaatctctctctctaatctctctctctctctctctctctctctctct
ctctc
gaattcatgatggctatacagtacaggaatccctaagctacactctgagt
acagactggtcctagactggtgagacaccgggacagaaccaacactgagg
gtaaagtatctgtggtgatgcttcatctgagaagtgggagtttacattgg
gtgtgaggttgctcccattaaagatcagcaaaaaatcaaaaattaaatct
gcttaaataaacaactgcttaggaggggaaaaatatctttgcaaagaaaa
taaggagtacagaaacctgagattaaaaagaaacatttttaaagggacaa
taaatacatgtttatatggtaacataaaagatacatacatcatagtgaaa
taataaaccacggcaaggaagacggcagcttccagatattgttgctgata
ctgaaaataaatggtgacagcactgggatgctggttcaagctaccccaag
gccgagacaggaagaccagtataggtttgaaaaaagtctgggctacaaag
aagctccaggctggcctgggcttcagagtgagcacttacattaaaaacaa
aagaaacaaacaaacaaaaaaaaaccccaaataaacaataaagaaaataa
agcattccaatggatcagatacaatagagcgggctaagagggagagagtg
ctggagaattatccagaatatgagaaagaaatataaagacataaaagtaa
caagaaagaaaaacattgtctacagaagtataaccagtaaaactaacagg
gaacataaaatggctggagaaaataaaacagcatcctaaagaaactaaag
gaacctgaagaagagttcagaaccctttctgctaataagaactgagacag
atgtaacaaacatttgcagacaaagatggttcacacagctgtgggaacag
ggttctaggtaacaagcaagcgtgacataacttctgaattcactctggct
gtggatagcctttgggtggcagccttgaatagcacacatgagtgacttgt
cactttcacaaagaggacagccatggctgacacagacacctgtaagaatg
acagtgaatcacagcacataatcttctgtcacacagaagctaagaacagc
ttcaggtgaaagaacaatataggtagacttacggtttcttctatagtaaa
tcaagcaatttcttccaaataata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_84860149_84860609
seq2: B6Ng01-070N10.b_44_504 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGAGAGAGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTAGAGAGAGAGAT  50

seq1  TAGAGAGAGAGGGAGGGAGGTAAGGAAGAAGGAAGAGAGGCAGAGGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAGGGAGGGAGGTAAGGAAGAAGGAAGAGAGGCAGAGGGAGA  100

seq1  GAAAGAAAGGAAGAGGAGGAGGAAGAGGAGGGAGAGGAGGAGGAGAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGGAAGAGGAGGAGGAAGAGGAGGGAGAGGAGGAGGAGAAGGA  150

seq1  GAAGGAGGGAGAGGAGGAGGAAGAAGAAAGGAGAAGGAGGGAGAGGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGGAGAGGAGGAGGAAGAAGAAAGGAGAAGGAGGGAGAGGAGGA  200

seq1  GGAAGAAGAAGAGGAGGAGGAAGAGGAGAAGGAGGAGGAAAAGAAGAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAGAAGAGGAGGAGGAAGAGGAGAAGGAGGAGGAAAAGAAGAAAC  250

seq1  AACAATAACAACAACAACTTGCGTAATCTGTTTAAGCCCATAGTATTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAACAACAACAACTTGCGTAATCTGTTTAAGCCCATAGTATTCCA  300

seq1  GAAACATTTCTCCATAAAACCTAGGCTTTCTGTACCATGCCAAGGTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATTTCTCCATAAAACCTAGGCTTTCTGTACCATGCCAAGGTGCAA  350

seq1  GATTTGAAGCTCATGACTTCTTATAAATCAATATATTTCTCTTCCATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAGCTCATGACTTCTTATAAATCAATATATTTCTCTTCCATGCC  400

seq1  AAGCTGAAATTAGTTCATGAGAAAATAAGTGTCACTGAATCTAAATGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGAAATTAGTTCATGAGAAAATAAGTGTCACTGAATCTAAATGAGA  450

seq1  TTAAGGAATTC  461
      |||||||||||
seq2  TTAAGGAATTC  461

seq1: chr6_84754366_84755552
seq2: B6Ng01-070N10.g_68_1241

seq1  GAATTCATGATGGCTATACAGTACAGGAATCCCTAAGCTACACTCTGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATGGCTATACAGTACAGGAATCCCTAAGCTACACTCTGAGT  50

seq1  ACAGACTGGTCCTAGACTGGTGAGACACCGGGACAGAACCAACACTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACTGGTCCTAGACTGGTGAGACACCGGGACAGAACCAACACTGAGG  100

seq1  GTAAAGTATCTGTGGTGATGCTTCATCTGAGAAGTGGGAGTTTACATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGTATCTGTGGTGATGCTTCATCTGAGAAGTGGGAGTTTACATTGG  150

seq1  GTGTGAGGTTGCTCCCATTAAAGATCAGCAAAAAATCAAAAATTAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGGTTGCTCCCATTAAAGATCAGCAAAAAATCAAAAATTAAATCT  200

seq1  GCTTAAATAAACAACTGCTTAGGAGGGGAAAAATATCTTTGCAAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATAAACAACTGCTTAGGAGGGGAAAAATATCTTTGCAAAGAAAA  250

seq1  TAAGGAGTACAGAAACCTGAGATTAAAAAGAAACATTTTTAAAGGGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTACAGAAACCTGAGATTAAAAAGAAACATTTTTAAAGGGACAA  300

seq1  TAAATACATGTTTATATGGTAACATAAAAGATACATACATCATAGTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATGTTTATATGGTAACATAAAAGATACATACATCATAGTGAAA  350

seq1  TAATAAACCACGGCAAGGAAGACGGCAGCTTCCAGATATTGTTGCTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAACCACGGCAAGGAAGACGGCAGCTTCCAGATATTGTTGCTGATA  400

seq1  CTGAAAATAAATGGTGACAGCACTGGGATGCTGGTTCAAGCTACCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAAATGGTGACAGCACTGGGATGCTGGTTCAAGCTACCCCAAG  450

seq1  GCCGAGACAGGAAGACCAGTATAGGTTTGAAAAAAGTCTGGGCTACAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGAGACAGGAAGACCAGTATAGGTTTGAAAAAAGTCTGGGCTACAAAG  500

seq1  AAGCTCCAGGCTGGCCTGGGCTTCAGAGTGAGCACTTACATTAAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCAGGCTGGCCTGGGCTTCAGAGTGAGCACTTACATTAAAAACAA  550

seq1  AAGAAACAAACAAACAAAAAAAAACCCCAAATAAACAATAAAGAAAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACAAACAAACAAAAAAAAACCCCAAATAAACAATAAAGAAAATAA  600

seq1  AGCATTCCAATGGATCAGATACAATAGAGCGGGCTAAGAGGGAGAGAGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCCAATGGATCAGATACAATAGAGCGGGCTAAGAGGGAGAGAGTG  650

seq1  CTGGAGAATTATCCAGAATATGAGAAAGAAATATAAAGACATAAAAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGAATTATCCAGAATATGAGAAAGAAATATAAAGACATAAAAGTAA  700

seq1  CAAGAAAGAAAAACATTGTCTACAGAAGTATAACCAGTAAAACTAACAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAAAACATTGTCTACAGAAGTATAACCAGTAAAACTAACAGG  750

seq1  GAACATAAAATGGCTGGAGAAAATAAAACAGCATCCTAAAGAAACTAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAAAATGGCTGGAGAAAATAAAACAGCATCCTAAAGAAACTAAAG  800

seq1  GAACCTGAAGAAGAGTTCAGAACCCTTTCTGCTAATAAGAACTGAGACAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGAAGAAGAGTTCAGAACCCTTTCTGCTAATAAGAACTGAGACAG  850

seq1  ATGTAACAAACATTTGCAGACAAAGATGGTTCACACAGCTGTGGGAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACAAACATTTGCAGACAAAGATGGTTCACACAGCTGTGGGAACAG  900

seq1  GGTTCTAGGTAACAAGCAAGCGTGACATAACTTCTGAATTCACTCTGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTAGGTAACAAGCAAGCGTGACATAACTTCTGAATTCACTCTGGCT  950

seq1  GTTGGATAGCCTTTGGGTGGCAGCCTTGAAATAGCACACATGAGTGACCT  1000
      | |||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  G-TGGATAGCCTTTGGGTGGCAGCCTTG-AATAGCACACATGAGTGA-CT  997

seq1  TGTCACTTTCACAAAGAGGACAGCCATGGCTTGACACAGACACCTGTAAG  1050
      |||||||||||||||||||||||||||||| |||||||||||||||||| 
seq2  TGTCACTTTCACAAAGAGGACAGCCATGGC-TGACACAGACACCTGTAA-  1045

seq1  GAATGACAGTGAATCACAGCACATAATCCTCCTGTCACACAGAAGCTAAG  1100
      ||||||||||||||||||||||||||| || |||||||||||||||||||
seq2  GAATGACAGTGAATCACAGCACATAAT-CTTCTGTCACACAGAAGCTAAG  1094

seq1  -ACAGCTTTCAAGTGAAAGACAATTATAGGGTTAGACTTTACGGTTTTCC  1149
       ||||| |||| ||||||||  | ||||||  ||||| |||||||||  |
seq2  AACAGC-TTCAGGTGAAAGAACAATATAGG--TAGAC-TTACGGTTT--C  1138

seq1  TTCTATAGTAAATCAAGCAAAATTTCTTCCAAATAATA  1187
      ||||||||||||||||||  ||||||||||||||||||
seq2  TTCTATAGTAAATCAAGC--AATTTCTTCCAAATAATA  1174