BAC Information

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BAC

Clone NameB6Ng01-071H05
Chromosome11 (Build37)6 (Build37)
Map Location 7,086,510 - 7,087,136107,082,501 - 107,083,016
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneNudcd3, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347
Downstream geneIgfbp1, Igfbp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071H05.bB6Ng01-071H05.g
ACCDH889148DH889149
length6271,151
definitionDH889148|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H05, 5' end.DH889149|Mus musculus domesticus DNA, BAC clone: B6Ng01-071H05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,086,510 - 7,087,136)(107,082,501 - 107,083,016)
sequence
gaattcaggaatctggagataaacacacatatctttgttctagacagttg
cagcacccttcatgggaacatagtacattctcatccaagcacaaccactc
agagactcgtacccagtgaccctagagatggggacactaagcactgaggg
tctgcacccatggctggagactcaaaccacaggcatgatgagacatgtct
acccccaatccccaccattgcattgatggttaatggacatctcagtgagc
aacagtcaaagatgagtctcaaagatagggttgaagcacagagaacgttc
tagcaaactgccttcctggaggggaggaaggcagctaaatgttatcagtg
aaataatcttaatacagaaatcccagcataaaaagacaaccctttgtggc
aaattgatgaacaggggaaggcagttgggtcggtggcactagctcagtgg
ttctcaacctgtaggccacaacccctttgggggaggtagtagaaagactc
tttcacaggggttacctaagaccattggaaagcacagatacttacattac
gattcataacagtaacaaaattacagttttgaagtagcaacgaaaataac
tttatggtggtggtggtggtggtggtg
gaattctcacctgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagg
agatgctggcgaggatgtggagaaaaaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatctgtctggcagttcctcg
gaaaattggacatagtactaccacaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctagaaagaacccagat
gctcctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttataaaattcctatgcaa
atggatgtacctggaggtcatcatcctgagtgaggtaaactattcacaaa
agaactcacatgatatgtactcactgataagtggatattagcccagaaac
ttaaaatacccaggatataagatacaatttgctaaacacatgaaactcaa
gaagaatgaagaccaaagtgtggacactttgccccttcttagaattggga
acaaaactcccatggaaggagttacagagacaaagtttggagctgagacg
aaaagatggaccatctagagactgccattcccggggatctatccaataat
cagcctccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatatagctgtctattgtgagactatgcccgggcctagcaaa
tacagcagtggatgctcacagtcagctaatggatggatcacagtgccccc
aatggaggagctagagaaagtacccaaggagctgggagatctgcacccta
tagtggaacacatatgactaccagtacccgagctcatgtctctagctgca
ttgtatcagagatggccttgtgcatcagtggagaaagccatgctgtacaa
cttattgccctcagtacagggatgccagggcctagaattggaatgtgtgg
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_7086510_7087136
seq2: B6Ng01-071H05.b_49_675

seq1  GAATTCAGGAATCTGGAGATAAACACACATATCTTTGTTCTAGACAGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAATCTGGAGATAAACACACATATCTTTGTTCTAGACAGTTG  50

seq1  CAGCACCCTTCATGGGAACATAGTACATTCTCATCCAAGCACAACCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCCTTCATGGGAACATAGTACATTCTCATCCAAGCACAACCACTC  100

seq1  AGAGACTCGTACCCAGTGACCCTAGAGATGGGGACACTAAGCACTGAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACTCGTACCCAGTGACCCTAGAGATGGGGACACTAAGCACTGAGGG  150

seq1  TCTGCACCCATGGCTGGAGACTCAAACCACAGGCATGATGAGACATGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACCCATGGCTGGAGACTCAAACCACAGGCATGATGAGACATGTCT  200

seq1  ACCCCCAATCCCCACCATTGCATTGATGGTTAATGGACATCTCAGTGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAATCCCCACCATTGCATTGATGGTTAATGGACATCTCAGTGAGC  250

seq1  AACAGTCAAAGATGAGTCTCAAAGATAGGGTTGAAGCACAGAGAACGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCAAAGATGAGTCTCAAAGATAGGGTTGAAGCACAGAGAACGTTC  300

seq1  TAGCAAACTGCCTTCCTGGAGGGGAGGAAGGCAGCTAAATGTTATCAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAACTGCCTTCCTGGAGGGGAGGAAGGCAGCTAAATGTTATCAGTG  350

seq1  AAATAATCTTAATACAGAAATCCCAGCATAAAAAGACAACCCTTTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATCTTAATACAGAAATCCCAGCATAAAAAGACAACCCTTTGTGGC  400

seq1  AAATTGATGAACAGGGGAAGGCAGTTGGGTCGGTGGCACTAGCTCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATGAACAGGGGAAGGCAGTTGGGTCGGTGGCACTAGCTCAGTGG  450

seq1  TTCTCAACCTGTAGGCCACAACCCCTTTGGGGGAGGTAGTAGAAAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAACCTGTAGGCCACAACCCCTTTGGGGGAGGTAGTAGAAAGACTC  500

seq1  TTTCACAGGGGTTACCTAAGACCATTGGAAAGCACAGATACTTACATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGGGGTTACCTAAGACCATTGGAAAGCACAGATACTTACATTAC  550

seq1  GATTCATAACAGTAACAAAATTACAGTTTTGAAGTAGCAACGAAAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATAACAGTAACAAAATTACAGTTTTGAAGTAGCAACGAAAATAAC  600

seq1  TTTATGGTGGTGGTGGTGGTGGTGGTG  627
      |||||||||||||||||||||||||||
seq2  TTTATGGTGGTGGTGGTGGTGGTGGTG  627

seq1: chr6_107082501_107083016
seq2: B6Ng01-071H05.g_1004_1215 (reverse)

seq1  CCCACACATTCCAATTCAAAATTCTCCAATGACATGATTCATAATGGTAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATGTCTATAATTCCAACACTTGGAAAGCAAAGGCAGGAGGATTGGAGTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGGCCACGCTGAAATGTACATTATGATTCTATATCAAAGGAAATAAAAA  150
                                                        
seq2  --------------------------------------------------  0

seq1  TTAAAGACAAAAAGGCTTTAGTAGTTTTCCATCATGACTTCTTTGTATTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TATTAGATATTTTCTTTATTTACATTTCAAATGCTATCCCGAAAGTTCCC  250
                                                        
seq2  --------------------------------------------------  0

seq1  TATATGCCCCCCCACCCTGCTCCCCTACCCACCCACTCCCACTTCTTGGC  300
                                 ||||| || | ||| |||| |||
seq2  ---------------------------CCCACACA-TTCCAATTCTAGGC  22

seq1  CCTGGTGTTCCCCTGTACTG-GGACATATAAAGTTTGCAAGACCTAGGGG  349
      |||||  |  |||||||||| || || ||||  | | ||  |       |
seq2  CCTGGCAT--CCCTGTACTGAGGGCA-ATAAGTTGTACAGCA------TG  63

seq1  CCTCTCTTCCCATTGATGGCCGACTAGGCCATCTTCTCCTATATATGCAG  399
       || |||  ||| |||||    || |||||||| |||  || | ||||||
seq2  GCTTTCT--CCACTGATG---CACAAGGCCATC-TCTGATACA-ATGCAG  106

seq1  CTAGAGACATGAGCTCTGGGGATACTGGTTAGTACATATTGTTGTTCCAT  449
      ||||||||||||||||   || |||||| |||| |||||   ||||||| 
seq2  CTAGAGACATGAGCTC---GGGTACTGG-TAGT-CATAT--GTGTTCCA-  148

seq1  CTATAGGGTTGCAGACCCCCTTCAGATCCTTGGGTACTTTCTCTAGCTGC  499
      |||||||| |||||| | ||  ||| |||||||||||||||||||||| |
seq2  CTATAGGG-TGCAGATCTCC--CAGCTCCTTGGGTACTTTCTCTAGCTCC  195

seq1  TCCATTGGGGGCCCTGT  516
      |||||||||||| ||||
seq2  TCCATTGGGGGCACTGT  212